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Conserved domains on  [gi|15228502|ref|NP_189526|]
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hypothetical protein (DUF1216) [Arabidopsis thaliana]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF1216 super family cl06007
Protein of unknown function (DUF1216); This family represents a conserved region, within ...
 70-173 1.71e-09

Protein of unknown function (DUF1216); This family represents a conserved region, within Arabidopsis thaliana proteins, of unknown function. Family members sometimes contain more than one copy.It has been reported that this domain will be found in other Brassicaceae.


The actual alignment was detected with superfamily member pfam06746:

Pssm-ID: 369060  Cd Length: 132  Bit Score: 55.57  E-value: 1.71e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228502    70 FFGNLRSYMNFINSAS--GSKNFDAELKGKAQGLFSAMSAMSGKGAASADSSK--------VMDTLLSM----GKTLGTQ 135
Cdd:pfam06746   1 FFEKLKASMKASCPVSstDEKGYVSDMKSAAGKLSEAMSSVGSKFSKSGEMKKsiqteqqeVMKTLKELqsvnSKIVSEN 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 15228502   136 QQSGSSVMSLG--QRKEMIMSMAKWAQTIGQFVVSAAAKS 173
Cdd:pfam06746  81 KGKKEGSMTLTseQQTEIKQTITKWEQVTTQFVETAVSSS 120
 
Name Accession Description Interval E-value
DUF1216 pfam06746
Protein of unknown function (DUF1216); This family represents a conserved region, within ...
 70-173 1.71e-09

Protein of unknown function (DUF1216); This family represents a conserved region, within Arabidopsis thaliana proteins, of unknown function. Family members sometimes contain more than one copy.It has been reported that this domain will be found in other Brassicaceae.


Pssm-ID: 369060  Cd Length: 132  Bit Score: 55.57  E-value: 1.71e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228502    70 FFGNLRSYMNFINSAS--GSKNFDAELKGKAQGLFSAMSAMSGKGAASADSSK--------VMDTLLSM----GKTLGTQ 135
Cdd:pfam06746   1 FFEKLKASMKASCPVSstDEKGYVSDMKSAAGKLSEAMSSVGSKFSKSGEMKKsiqteqqeVMKTLKELqsvnSKIVSEN 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 15228502   136 QQSGSSVMSLG--QRKEMIMSMAKWAQTIGQFVVSAAAKS 173
Cdd:pfam06746  81 KGKKEGSMTLTseQQTEIKQTITKWEQVTTQFVETAVSSS 120
 
Name Accession Description Interval E-value
DUF1216 pfam06746
Protein of unknown function (DUF1216); This family represents a conserved region, within ...
 70-173 1.71e-09

Protein of unknown function (DUF1216); This family represents a conserved region, within Arabidopsis thaliana proteins, of unknown function. Family members sometimes contain more than one copy.It has been reported that this domain will be found in other Brassicaceae.


Pssm-ID: 369060  Cd Length: 132  Bit Score: 55.57  E-value: 1.71e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228502    70 FFGNLRSYMNFINSAS--GSKNFDAELKGKAQGLFSAMSAMSGKGAASADSSK--------VMDTLLSM----GKTLGTQ 135
Cdd:pfam06746   1 FFEKLKASMKASCPVSstDEKGYVSDMKSAAGKLSEAMSSVGSKFSKSGEMKKsiqteqqeVMKTLKELqsvnSKIVSEN 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 15228502   136 QQSGSSVMSLG--QRKEMIMSMAKWAQTIGQFVVSAAAKS 173
Cdd:pfam06746  81 KGKKEGSMTLTseQQTEIKQTITKWEQVTTQFVETAVSSS 120
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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