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Conserved domains on  [gi|15232333|ref|NP_188704|]
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plant/protein (DUF1995) [Arabidopsis thaliana]

Protein Classification

DUF1995 family protein( domain architecture ID 10558678)

DUF1995 family protein similar to Arabidopsis thaliana chloroplastic protein LOW PSII ACCUMULATION 3 (LPA3) that is involved in assisting chlorophyll a binding protein psbC assembly within photosystem II (PSII)

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
DUF1995 pfam09353
Domain of unknown function (DUF1995); This family of proteins are functionally uncharacterized.
77-303 1.99e-40

Domain of unknown function (DUF1995); This family of proteins are functionally uncharacterized.


:

Pssm-ID: 430551  Cd Length: 201  Bit Score: 140.54  E-value: 1.99e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15232333    77 EEAINQAKTCLLSCLikplNNPKlaspklrklkqPRFRLEIPILDDDSPSSLSQLAFSIFHDLPisRRGSNVKLLFlwPN 156
Cdd:pfam09353   1 EEAIAQAAEATQAAL----EDGK-----------TRLQVELLLPELDGLLREMPLALAFLRKLV--ELGSGLKVLF--PD 61
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15232333   157 PSFIDPAVKAFRSDSIHHIAMspVSDSLKTALRSADVAIFMAPEKSQLEDVKTASEAFSTKPVVMINPRWLFEEEKSFG- 235
Cdd:pfam09353  62 AGAAALARRDWGGLPFSIAGV--KGSIGDLVDPEDDVFVLVAPSAVELEDVEKLCEAAGDRPVVLLNPRLEDVGEVGIGl 139
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15232333   236 ------DGFIGSFEVIYAFTGLEVRGvfskRKGVIFKCVRdgvvsgERWNVLVEEEEGNgtLKVVSQFNSRPSI 303
Cdd:pfam09353 140 aarqlrERFLSTFEVVYYLRPLEVGG----ISGALFRCYP------GPWQVWLEEDGGG--YKLVAEFEQRPTG 201
 
Name Accession Description Interval E-value
DUF1995 pfam09353
Domain of unknown function (DUF1995); This family of proteins are functionally uncharacterized.
77-303 1.99e-40

Domain of unknown function (DUF1995); This family of proteins are functionally uncharacterized.


Pssm-ID: 430551  Cd Length: 201  Bit Score: 140.54  E-value: 1.99e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15232333    77 EEAINQAKTCLLSCLikplNNPKlaspklrklkqPRFRLEIPILDDDSPSSLSQLAFSIFHDLPisRRGSNVKLLFlwPN 156
Cdd:pfam09353   1 EEAIAQAAEATQAAL----EDGK-----------TRLQVELLLPELDGLLREMPLALAFLRKLV--ELGSGLKVLF--PD 61
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15232333   157 PSFIDPAVKAFRSDSIHHIAMspVSDSLKTALRSADVAIFMAPEKSQLEDVKTASEAFSTKPVVMINPRWLFEEEKSFG- 235
Cdd:pfam09353  62 AGAAALARRDWGGLPFSIAGV--KGSIGDLVDPEDDVFVLVAPSAVELEDVEKLCEAAGDRPVVLLNPRLEDVGEVGIGl 139
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15232333   236 ------DGFIGSFEVIYAFTGLEVRGvfskRKGVIFKCVRdgvvsgERWNVLVEEEEGNgtLKVVSQFNSRPSI 303
Cdd:pfam09353 140 aarqlrERFLSTFEVVYYLRPLEVGG----ISGALFRCYP------GPWQVWLEEDGGG--YKLVAEFEQRPTG 201
 
Name Accession Description Interval E-value
DUF1995 pfam09353
Domain of unknown function (DUF1995); This family of proteins are functionally uncharacterized.
77-303 1.99e-40

Domain of unknown function (DUF1995); This family of proteins are functionally uncharacterized.


Pssm-ID: 430551  Cd Length: 201  Bit Score: 140.54  E-value: 1.99e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15232333    77 EEAINQAKTCLLSCLikplNNPKlaspklrklkqPRFRLEIPILDDDSPSSLSQLAFSIFHDLPisRRGSNVKLLFlwPN 156
Cdd:pfam09353   1 EEAIAQAAEATQAAL----EDGK-----------TRLQVELLLPELDGLLREMPLALAFLRKLV--ELGSGLKVLF--PD 61
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15232333   157 PSFIDPAVKAFRSDSIHHIAMspVSDSLKTALRSADVAIFMAPEKSQLEDVKTASEAFSTKPVVMINPRWLFEEEKSFG- 235
Cdd:pfam09353  62 AGAAALARRDWGGLPFSIAGV--KGSIGDLVDPEDDVFVLVAPSAVELEDVEKLCEAAGDRPVVLLNPRLEDVGEVGIGl 139
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15232333   236 ------DGFIGSFEVIYAFTGLEVRGvfskRKGVIFKCVRdgvvsgERWNVLVEEEEGNgtLKVVSQFNSRPSI 303
Cdd:pfam09353 140 aarqlrERFLSTFEVVYYLRPLEVGG----ISGALFRCYP------GPWQVWLEEDGGG--YKLVAEFEQRPTG 201
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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