|
Name |
Accession |
Description |
Interval |
E-value |
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
72-293 |
6.54e-11 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 64.26 E-value: 6.54e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42564988 72 LGEIYLRLENFEEALIYQKKHLQLAEEANDtvekqrACTQLGRTYHEMflksEDDCEAIqsakKYFKKAMELaqilkeKP 151
Cdd:COG0457 14 LGLAYRRLGRYEEAIEDYEKALELDPDDAE------ALYNLGLAYLRL----GRYEEAL----ADYEQALEL------DP 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42564988 152 ppgessgfleEYINAHNNIGMLDLDLDNPEAARTILKKGLQIcdeeevreyDAARSRLHHNLGNVFMALRSWDEAKKHIE 231
Cdd:COG0457 74 ----------DDAEALNNLGLALQALGRYEEALEDYDKALEL---------DPDDAEALYNLGLALLELGRYDEAIEAYE 134
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 42564988 232 MDINIchKINHvqgeAKGYINLAELHNKTQKYIDALLCYGKASSLAKSMQDESALVEQIEHN 293
Cdd:COG0457 135 RALEL--DPDD----ADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALAL 190
|
|
| RNA1 |
COG5238 |
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ... |
843-1076 |
1.04e-09 |
|
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444072 [Multi-domain] Cd Length: 434 Bit Score: 62.50 E-value: 1.04e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42564988 843 INVSECELQDISAAPLLCALHVH-NIAMLDLSHNMLGNGTMEKLKQLFASSSQMYgalTLDLHCNRFGPTALFQICECPV 921
Cdd:COG5238 185 VYLGCNQIGDEGIEELAEALTQNtTVTTLWLKRNPIGDEGAEILAEALKGNKSLT---TLDLSNNQIGDEGVIALAEALK 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42564988 922 LFTRLEVLNVSRNRLTDACGSYLSTIVKNCRALYSLNVEHCSLTSRTIQKVANALDSKSGLSQLCIGYNN--PVSGSSIQ 999
Cdd:COG5238 262 NNTTVETLYLSGNQIGAEGAIALAKALQGNTTLTSLDLSVNRIGDEGAIALAEGLQGNKTLHTLNLAYNGigAQGAIALA 341
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 42564988 1000 NLLAKLATLSSFaELSMNgiKLSSQVVDSL-YALVKTPSLSKLLVGSSGIGTDGAIKVTESLCYQKEETVKLDLSCCG 1076
Cdd:COG5238 342 KALQENTTLHSL-DLSDN--QIGDEGAIALaKYLEGNTTLRELNLGKNNIGKQGAEALIDALQTNRLHTLILDGNLIG 416
|
|
| LRR_RI |
cd00116 |
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ... |
924-1160 |
1.12e-09 |
|
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Pssm-ID: 238064 [Multi-domain] Cd Length: 319 Bit Score: 61.60 E-value: 1.12e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42564988 924 TRLEVLNVSRNRLTDAcgsyLSTIVKNCRALYSLNV---EHCSLTSRTIQKVANAL-DSKSGLSQLCIGYNNPVSGSSIQ 999
Cdd:cd00116 81 CGLQELDLSDNALGPD----GCGVLESLLRSSSLQElklNNNGLGDRGLRLLAKGLkDLPPALEKLVLGRNRLEGASCEA 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42564988 1000 nlLAKlatlssfaelsmngiklssqvvdslyALVKTPSLSKLLVGSSGIGTDGAIKVTESLCYQKEeTVKLDLSCCGLAS 1079
Cdd:cd00116 157 --LAK--------------------------ALRANRDLKELNLANNGIGDAGIRALAEGLKANCN-LEVLDLNNNGLTD 207
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42564988 1080 SFFIKLNQDVTLTSSILEFNVGGNPITEEGISALGELLRNPCSNIKVLILSKCHLKLAGLLCIIQALSDNKNLEELNLSD 1159
Cdd:cd00116 208 EGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRG 287
|
.
gi 42564988 1160 N 1160
Cdd:cd00116 288 N 288
|
|
| RNA1 |
COG5238 |
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ... |
1031-1166 |
6.47e-09 |
|
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444072 [Multi-domain] Cd Length: 434 Bit Score: 59.80 E-value: 6.47e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42564988 1031 ALVKTPSLSKLLVGSSGIGTDGAIKVTESLCYQKEETVkLDLSCCGLASSFFIKLNQDVTLTSSILEFNVGGNPITEEGI 1110
Cdd:COG5238 203 ALTQNTTVTTLWLKRNPIGDEGAEILAEALKGNKSLTT-LDLSNNQIGDEGVIALAEALKNNTTVETLYLSGNQIGAEGA 281
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 42564988 1111 SALGELLRNPcSNIKVLILSKCHLKLAGLLCIIQALSDNKNLEELNLSDNaKIEDE 1166
Cdd:COG5238 282 IALAKALQGN-TTLTSLDLSVNRIGDEGAIALAEGLQGNKTLHTLNLAYN-GIGAQ 335
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
72-145 |
6.60e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 42.37 E-value: 6.60e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 42564988 72 LGEIYLRLENFEEALIYQKKHLQLAEEANDTVEKQRACTQ--LGRTYHEMflkseddcEAIQSAKKYFKKAMELAQ 145
Cdd:pfam13424 9 LAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLlnLGRLYLEL--------GRYEEALELLERALALAE 76
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
24-98 |
3.60e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 40.45 E-value: 3.60e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 42564988 24 EQARWANNVGDILKNHGEYVDALKWFRIDYDISVKYLpGKDLLPTCQS---LGEIYLRLENFEEALIYQKKHLQLAEE 98
Cdd:pfam13424 1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRLL-GPDHPLTATTllnLGRLYLELGRYEEALELLERALALAEK 77
|
|
| LRR_4 |
pfam12799 |
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a ... |
1123-1165 |
2.81e-03 |
|
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains.
Pssm-ID: 463713 [Multi-domain] Cd Length: 44 Bit Score: 36.84 E-value: 2.81e-03
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 42564988 1123 NIKVLILSKCHLKlagllcIIQALSDNKNLEELNLSDNAKIED 1165
Cdd:pfam12799 2 NLEVLDLSNNQIT------DIPPLAKLPNLETLDLSGNNKITD 38
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
24-99 |
5.39e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 37.46 E-value: 5.39e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 42564988 24 EQARWANNVGDILKNHGEYVDAlkwfrIDYDISVKYLPgkDLLPTCQSLGEIYLRLENFEEALIYQKKHLQLAEEA 99
Cdd:COG3063 24 DNADALNNLGLLLLEQGRYDEA-----IALEKALKLDP--NNAEALLNLAELLLELGDYDEALAYLERALELDPSA 92
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
72-293 |
6.54e-11 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 64.26 E-value: 6.54e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42564988 72 LGEIYLRLENFEEALIYQKKHLQLAEEANDtvekqrACTQLGRTYHEMflksEDDCEAIqsakKYFKKAMELaqilkeKP 151
Cdd:COG0457 14 LGLAYRRLGRYEEAIEDYEKALELDPDDAE------ALYNLGLAYLRL----GRYEEAL----ADYEQALEL------DP 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42564988 152 ppgessgfleEYINAHNNIGMLDLDLDNPEAARTILKKGLQIcdeeevreyDAARSRLHHNLGNVFMALRSWDEAKKHIE 231
Cdd:COG0457 74 ----------DDAEALNNLGLALQALGRYEEALEDYDKALEL---------DPDDAEALYNLGLALLELGRYDEAIEAYE 134
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 42564988 232 MDINIchKINHvqgeAKGYINLAELHNKTQKYIDALLCYGKASSLAKSMQDESALVEQIEHN 293
Cdd:COG0457 135 RALEL--DPDD----ADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALAL 190
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
30-231 |
6.51e-10 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 61.18 E-value: 6.51e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42564988 30 NNVGDILKNHGEYVDALKWFR--IDYDisvkylpgKDLLPTCQSLGEIYLRLENFEEALIYQKKHLQLaeEANDTvekqR 107
Cdd:COG0457 12 NNLGLAYRRLGRYEEAIEDYEkaLELD--------PDDAEALYNLGLAYLRLGRYEEALADYEQALEL--DPDDA----E 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42564988 108 ACTQLGRTYHEMFLKSEddceaiqsAKKYFKKAMELAqilkekpppgessgflEEYINAHNNIGMLDLDLDNPEAARTIL 187
Cdd:COG0457 78 ALNNLGLALQALGRYEE--------ALEDYDKALELD----------------PDDAEALYNLGLALLELGRYDEAIEAY 133
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 42564988 188 KKGLQIcdeeevreyDAARSRLHHNLGNVFMALRSWDEAKKHIE 231
Cdd:COG0457 134 ERALEL---------DPDDADALYNLGIALEKLGRYEEALELLE 168
|
|
| RNA1 |
COG5238 |
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ... |
843-1076 |
1.04e-09 |
|
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444072 [Multi-domain] Cd Length: 434 Bit Score: 62.50 E-value: 1.04e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42564988 843 INVSECELQDISAAPLLCALHVH-NIAMLDLSHNMLGNGTMEKLKQLFASSSQMYgalTLDLHCNRFGPTALFQICECPV 921
Cdd:COG5238 185 VYLGCNQIGDEGIEELAEALTQNtTVTTLWLKRNPIGDEGAEILAEALKGNKSLT---TLDLSNNQIGDEGVIALAEALK 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42564988 922 LFTRLEVLNVSRNRLTDACGSYLSTIVKNCRALYSLNVEHCSLTSRTIQKVANALDSKSGLSQLCIGYNN--PVSGSSIQ 999
Cdd:COG5238 262 NNTTVETLYLSGNQIGAEGAIALAKALQGNTTLTSLDLSVNRIGDEGAIALAEGLQGNKTLHTLNLAYNGigAQGAIALA 341
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 42564988 1000 NLLAKLATLSSFaELSMNgiKLSSQVVDSL-YALVKTPSLSKLLVGSSGIGTDGAIKVTESLCYQKEETVKLDLSCCG 1076
Cdd:COG5238 342 KALQENTTLHSL-DLSDN--QIGDEGAIALaKYLEGNTTLRELNLGKNNIGKQGAEALIDALQTNRLHTLILDGNLIG 416
|
|
| LRR_RI |
cd00116 |
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ... |
924-1160 |
1.12e-09 |
|
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Pssm-ID: 238064 [Multi-domain] Cd Length: 319 Bit Score: 61.60 E-value: 1.12e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42564988 924 TRLEVLNVSRNRLTDAcgsyLSTIVKNCRALYSLNV---EHCSLTSRTIQKVANAL-DSKSGLSQLCIGYNNPVSGSSIQ 999
Cdd:cd00116 81 CGLQELDLSDNALGPD----GCGVLESLLRSSSLQElklNNNGLGDRGLRLLAKGLkDLPPALEKLVLGRNRLEGASCEA 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42564988 1000 nlLAKlatlssfaelsmngiklssqvvdslyALVKTPSLSKLLVGSSGIGTDGAIKVTESLCYQKEeTVKLDLSCCGLAS 1079
Cdd:cd00116 157 --LAK--------------------------ALRANRDLKELNLANNGIGDAGIRALAEGLKANCN-LEVLDLNNNGLTD 207
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42564988 1080 SFFIKLNQDVTLTSSILEFNVGGNPITEEGISALGELLRNPCSNIKVLILSKCHLKLAGLLCIIQALSDNKNLEELNLSD 1159
Cdd:cd00116 208 EGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRG 287
|
.
gi 42564988 1160 N 1160
Cdd:cd00116 288 N 288
|
|
| RNA1 |
COG5238 |
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ... |
861-1146 |
3.77e-09 |
|
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444072 [Multi-domain] Cd Length: 434 Bit Score: 60.57 E-value: 3.77e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42564988 861 ALHVHNIAMLDLSHNMLGNGTMEKLKQLFASSSQMYgalTLDLHCNRFGPTALFQICECPVLFTRLEVLNVSRNRLTDAC 940
Cdd:COG5238 176 ALQNNSVETVYLGCNQIGDEGIEELAEALTQNTTVT---TLWLKRNPIGDEGAEILAEALKGNKSLTTLDLSNNQIGDEG 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42564988 941 GSYLSTIVKNCRALYSLNVEHCSLTSRTIQKVANALDSKSGLSQLCIGYNNpVSGSSIQNLlaklatlssfAElsmngik 1020
Cdd:COG5238 253 VIALAEALKNNTTVETLYLSGNQIGAEGAIALAKALQGNTTLTSLDLSVNR-IGDEGAIAL----------AE------- 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42564988 1021 lssqvvdslyALVKTPSLSKLLVGSSGIGTDGAIKVTESLcyQKEETVK-LDLSCCGLASSFFIKLNQDVTLTSSILEFN 1099
Cdd:COG5238 315 ----------GLQGNKTLHTLNLAYNGIGAQGAIALAKAL--QENTTLHsLDLSDNQIGDEGAIALAKYLEGNTTLRELN 382
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 42564988 1100 VGGNPITEEGISALGELLRNpcSNIKVLILSKCHLKLAGLLCIIQAL 1146
Cdd:COG5238 383 LGKNNIGKQGAEALIDALQT--NRLHTLILDGNLIGAEAQQRLEQLL 427
|
|
| RNA1 |
COG5238 |
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ... |
1031-1166 |
6.47e-09 |
|
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444072 [Multi-domain] Cd Length: 434 Bit Score: 59.80 E-value: 6.47e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42564988 1031 ALVKTPSLSKLLVGSSGIGTDGAIKVTESLCYQKEETVkLDLSCCGLASSFFIKLNQDVTLTSSILEFNVGGNPITEEGI 1110
Cdd:COG5238 203 ALTQNTTVTTLWLKRNPIGDEGAEILAEALKGNKSLTT-LDLSNNQIGDEGVIALAEALKNNTTVETLYLSGNQIGAEGA 281
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 42564988 1111 SALGELLRNPcSNIKVLILSKCHLKLAGLLCIIQALSDNKNLEELNLSDNaKIEDE 1166
Cdd:COG5238 282 IALAKALQGN-TTLTSLDLSVNRIGDEGAIALAEGLQGNKTLHTLNLAYN-GIGAQ 335
|
|
| LRR_RI |
cd00116 |
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ... |
900-1132 |
1.20e-08 |
|
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Pssm-ID: 238064 [Multi-domain] Cd Length: 319 Bit Score: 58.14 E-value: 1.20e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42564988 900 TLDLHCNRFGPT--ALFQICecpVLFTRLEVLNVSRNRLTDACGSYLSTIVKNCR-ALYSLNVEHCSLTSRTIQKVANAL 976
Cdd:cd00116 85 ELDLSDNALGPDgcGVLESL---LRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPpALEKLVLGRNRLEGASCEALAKAL 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42564988 977 DSKSGLSQLCIGyNNPVSGSSIQNLLAKLATLSSFAELSMNGIKLSSQVVDSLYALVKTP-SLSKLLVGSSGIGTDGAIK 1055
Cdd:cd00116 162 RANRDLKELNLA-NNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLkSLEVLNLGDNNLTDAGAAA 240
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 42564988 1056 VTESLCYQKEETVKLDLSCCGLASSFFIKLNQDVTLTSSILEFNVGGNPITEEGISALGELLRNPCSNIKVLILSKC 1132
Cdd:cd00116 241 LASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDD 317
|
|
| LRR_RI |
cd00116 |
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ... |
820-1022 |
1.78e-07 |
|
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Pssm-ID: 238064 [Multi-domain] Cd Length: 319 Bit Score: 54.67 E-value: 1.78e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42564988 820 QSLSEKPSMKLLKKlyiseveddinvSECELQDISAAPLLCAL--HVHNIAMLDLSHNMLGNGTMEKLKQLFASSSQMYg 897
Cdd:cd00116 102 ESLLRSSSLQELKL------------NNNGLGDRGLRLLAKGLkdLPPALEKLVLGRNRLEGASCEALAKALRANRDLK- 168
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42564988 898 alTLDLHCNRFGPTALFQICECPVLFTRLEVLNVSRNRLTDACGSYLSTIVKNCRALYSLNVEHCSLTSRTIQKVANALD 977
Cdd:cd00116 169 --ELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALL 246
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 42564988 978 SKS-GLSQLCIGYNNpVSGSSIQNLLAKLATLSSFAELSMNGIKLS 1022
Cdd:cd00116 247 SPNiSLLTLSLSCND-ITDDGAKDLAEVLAEKESLLELDLRGNKFG 291
|
|
| RNA1 |
COG5238 |
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ... |
996-1166 |
1.88e-07 |
|
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444072 [Multi-domain] Cd Length: 434 Bit Score: 55.18 E-value: 1.88e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42564988 996 SSIQNLLAKLATLSSFaELSMNGIKLSsQVVDSLYALVKTPSLSKLLVGSSGIGTDGAIKVTESLCYQKEETvKLDLSCC 1075
Cdd:COG5238 198 EELAEALTQNTTVTTL-WLKRNPIGDE-GAEILAEALKGNKSLTTLDLSNNQIGDEGVIALAEALKNNTTVE-TLYLSGN 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42564988 1076 GLASSFFIKLNQDVTLTSSILEFNVGGNPITEEGISALGELLRNPcSNIKVLILSKCHLKLAGLLCIIQALSDNKNLEEL 1155
Cdd:COG5238 275 QIGAEGAIALAKALQGNTTLTSLDLSVNRIGDEGAIALAEGLQGN-KTLHTLNLAYNGIGAQGAIALAKALQENTTLHSL 353
|
170
....*....|.
gi 42564988 1156 NLSDNaKIEDE 1166
Cdd:COG5238 354 DLSDN-QIGDE 363
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
107-273 |
4.56e-07 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 52.70 E-value: 4.56e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42564988 107 RACTQLGRTYHEMflkseddcEAIQSAKKYFKKAMELAQilkekpppgessgfleEYINAHNNIGMLDLDLDNPEAARTI 186
Cdd:COG0457 9 EAYNNLGLAYRRL--------GRYEEAIEDYEKALELDP----------------DDAEALYNLGLAYLRLGRYEEALAD 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42564988 187 LKKGLQIcdeeevreyDAARSRLHHNLGNVFMALRSWDEAKKHIEMDINICHKinhvqgEAKGYINLAELHNKTQKYIDA 266
Cdd:COG0457 65 YEQALEL---------DPDDAEALNNLGLALQALGRYEEALEDYDKALELDPD------DAEALYNLGLALLELGRYDEA 129
|
....*..
gi 42564988 267 LLCYGKA 273
Cdd:COG0457 130 IEAYERA 136
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
70-267 |
9.54e-07 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 52.04 E-value: 9.54e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42564988 70 QSLGEIYLRLENFEEALIYQKKhlqLAEEANDTVEkqrACTQLGRTYhemfLKSEDdceaIQSAKKYFKKAMELAQilke 149
Cdd:COG2956 114 RLLAEIYEQEGDWEKAIEVLER---LLKLGPENAH---AYCELAELY----LEQGD----YDEAIEALEKALKLDP---- 175
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42564988 150 kpppgessgfleEYINAHNNIGMLDLDLDNPEAARTILKKGLQIcdeeevreyDAARSRLHHNLGNVFMALRSWDEAKKH 229
Cdd:COG2956 176 ------------DCARALLLLAELYLEQGDYEEAIAALERALEQ---------DPDYLPALPRLAELYEKLGDPEEALEL 234
|
170 180 190
....*....|....*....|....*....|....*...
gi 42564988 230 IEmdinichKINHVQGEAKGYINLAELHNKTQKYIDAL 267
Cdd:COG2956 235 LR-------KALELDPSDDLLLALADLLERKEGLEAAL 265
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
72-273 |
2.60e-06 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 50.50 E-value: 2.60e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42564988 72 LGEIYLRLENFEEALIYqkkHLQLAEEANDtveKQRACTQLGRTYheMFLKSEDDceaiqsAKKYFKKAMELAqilkekp 151
Cdd:COG2956 48 LGNLYRRRGEYDRAIRI---HQKLLERDPD---RAEALLELAQDY--LKAGLLDR------AEELLEKLLELD------- 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42564988 152 ppgessgflEEYINAHNNIGMLDLDLDNPEAARTILKKGLQICDEEevreydaarSRLHHNLGNVFMALRSWDEAKKHIE 231
Cdd:COG2956 107 ---------PDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPEN---------AHAYCELAELYLEQGDYDEAIEALE 168
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 42564988 232 MDINIChkinhvQGEAKGYINLAELHNKTQKYIDALLCYGKA 273
Cdd:COG2956 169 KALKLD------PDCARALLLLAELYLEQGDYEEAIAALERA 204
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
162-286 |
2.95e-06 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 50.01 E-value: 2.95e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42564988 162 EYINAHNNIGMLDLDLDNPEAARTILKKGLQIcdeeevreyDAARSRLHHNLGNVFMALRSWDEAKKHIEMDINIchKIN 241
Cdd:COG0457 6 DDAEAYNNLGLAYRRLGRYEEAIEDYEKALEL---------DPDDAEALYNLGLAYLRLGRYEEALADYEQALEL--DPD 74
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 42564988 242 HvqgeAKGYINLAELHNKTQKYIDALLCYGKAssLAKSMQDESAL 286
Cdd:COG0457 75 D----AEALNNLGLALQALGRYEEALEDYDKA--LELDPDDAEAL 113
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
22-231 |
4.47e-06 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 51.15 E-value: 4.47e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42564988 22 RREQARWANNVGDILKNHGEYVDALKWFRIdydiSVKYLPgkDLLPTCQSLGEIYLRLENFEEALiyqkKHLQLAEEAN- 100
Cdd:COG3914 74 LLLLAALLELAALLLQALGRYEEALALYRR----ALALNP--DNAEALFNLGNLLLALGRLEEAL----AALRRALALNp 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42564988 101 DTVEkqrACTQLGRTYHEMFLKSEddceaiqsAKKYFKKAMELAqilkekpppgessgflEEYINAHNNIGMLDLDLDNP 180
Cdd:COG3914 144 DFAE---AYLNLGEALRRLGRLEE--------AIAALRRALELD----------------PDNAEALNNLGNALQDLGRL 196
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 42564988 181 EAARTILKKGLQIcdeeevreyDAARSRLHHNLGNVFMALRSWDEAKKHIE 231
Cdd:COG3914 197 EEAIAAYRRALEL---------DPDNADAHSNLLFALRQACDWEVYDRFEE 238
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
65-236 |
1.02e-05 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 46.88 E-value: 1.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42564988 65 LLPTCQSLGEIYLRLENFEEALIYQKKHLQLAEEANDTVEKQRACTQLGRTYHEMFLKSEDDCEAIQsakkYFKKAMELA 144
Cdd:COG5010 9 RLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLA----LLEQALQLD 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42564988 145 qilkekpppgessgflEEYINAHNNIGMLDLDLDNPEAARTILKKGLQIcdeeevreyDAARSRLHHNLGNVFMALRSWD 224
Cdd:COG5010 85 ----------------PNNPELYYNLALLYSRSGDKDEAKEYYEKALAL---------SPDNPNAYSNLAALLLSLGQDD 139
|
170
....*....|..
gi 42564988 225 EAKKHIEMDINI 236
Cdd:COG5010 140 EAKAALQRALGT 151
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
72-295 |
1.49e-05 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 48.19 E-value: 1.49e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42564988 72 LGEIYLRLENFEEAL-IYQKkhlqLAEEANDTVEkqrACTQLGRTYHEMflkseddcEAIQSAKKYFKKAMELAqilkek 150
Cdd:COG2956 14 KGLNYLLNGQPDKAIdLLEE----ALELDPETVE---AHLALGNLYRRR--------GEYDRAIRIHQKLLERD------ 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42564988 151 pppgessgflEEYINAHNNIGMLDLDLDNPEAARTILKKGLQIcdeeevreyDAARSRLHHNLGNVFMALRSWDEAkkhi 230
Cdd:COG2956 73 ----------PDRAEALLELAQDYLKAGLLDRAEELLEKLLEL---------DPDDAEALRLLAEIYEQEGDWEKA---- 129
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 42564988 231 emdINICHKINHVQGE-AKGYINLAELHNKTQKYIDALLCYGKASSLAKSMQDESALVEQIEHNTK 295
Cdd:COG2956 130 ---IEVLERLLKLGPEnAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQG 192
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
137-277 |
3.39e-05 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 45.18 E-value: 3.39e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42564988 137 FKKAMELA-QILKEKPppgessgfleEYINAHNNIGMLDLDLDNPEAARTILKKGLQIcdeeevreyDAARSRLHHNLGN 215
Cdd:COG4783 20 YDEAEALLeKALELDP----------DNPEAFALLGEILLQLGDLDEAIVLLHEALEL---------DPDEPEARLNLGL 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 42564988 216 VFMALRSWDEAKKHIEMDINIchKINHvqgeAKGYINLAELHNKTQKYIDALLCYGKASSLA 277
Cdd:COG4783 81 ALLKAGDYDEALALLEKALKL--DPEH----PEAYLRLARAYRALGRPDEAIAALEKALELD 136
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
30-209 |
4.02e-05 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 46.54 E-value: 4.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42564988 30 NNVGDILKNHGEYVDALKwfriDYDISVKYLPgkDLLPTCQSLGEIYLRLENFEEALIYQKKHLQLAEEandtveKQRAC 109
Cdd:COG0457 46 YNLGLAYLRLGRYEEALA----DYEQALELDP--DDAEALNNLGLALQALGRYEEALEDYDKALELDPD------DAEAL 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42564988 110 TQLGRTYHEMflkseddcEAIQSAKKYFKKAMELAqilkekpppgessgflEEYINAHNNIGMLDLDLDNPEAARTILKK 189
Cdd:COG0457 114 YNLGLALLEL--------GRYDEAIEAYERALELD----------------PDDADALYNLGIALEKLGRYEEALELLEK 169
|
170 180
....*....|....*....|
gi 42564988 190 GLQICDEEEVREYDAARSRL 209
Cdd:COG0457 170 LEAAALAALLAAALGEAALA 189
|
|
| LRR_RI |
cd00116 |
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ... |
956-1166 |
4.11e-05 |
|
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Pssm-ID: 238064 [Multi-domain] Cd Length: 319 Bit Score: 47.35 E-value: 4.11e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42564988 956 SLNVEHCSLTSRTIQKVANALDSKSGLSQLCIGYNN-PVSGSSIQNLLAKLATLSSFAELSMNGIKLSSQVVDSLYALVK 1034
Cdd:cd00116 27 VLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNEtGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLR 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42564988 1035 TPSLSKLLVGSSGIGTDGAIKVTESLCYQKEETVKLDLSCCGLASSFFIKLNQDVTLTSSILEFNVGGNPITEEGISALG 1114
Cdd:cd00116 107 SSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALA 186
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 42564988 1115 ellrnpcsnikvlilskchlklagllciiQALSDNKNLEELNLSDNAkIEDE 1166
Cdd:cd00116 187 -----------------------------EGLKANCNLEVLDLNNNG-LTDE 208
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
72-145 |
6.60e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 42.37 E-value: 6.60e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 42564988 72 LGEIYLRLENFEEALIYQKKHLQLAEEANDTVEKQRACTQ--LGRTYHEMflkseddcEAIQSAKKYFKKAMELAQ 145
Cdd:pfam13424 9 LAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLlnLGRLYLEL--------GRYEEALELLERALALAE 76
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
880-1161 |
1.42e-04 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 46.08 E-value: 1.42e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42564988 880 GTMEKLKQLFASSSQMYGALT----LDLHCNRFG--PTALFQicecpvlFTRLEVLNVSRNRLTDacgsyLSTIVKNCRA 953
Cdd:COG4886 93 GDLTNLTELDLSGNEELSNLTnlesLDLSGNQLTdlPEELAN-------LTNLKELDLSNNQLTD-----LPEPLGNLTN 160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42564988 954 LYSLNVEHCSLTSrtiqkVANALDSKSGLSQLCIGYNNpvsgssIQNLLAKLATLSSFAELSMNGIKLSSqVVDSLYALv 1033
Cdd:COG4886 161 LKSLDLSNNQLTD-----LPEELGNLTNLKELDLSNNQ------ITDLPEPLGNLTNLEELDLSGNQLTD-LPEPLANL- 227
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42564988 1034 ktPSLSKLLVGSSGIGTDGAIKVTESLcyqkeetVKLDLSCCGLASsffikLNQDVTLTSsILEFNVGGNPITEEGISAL 1113
Cdd:COG4886 228 --TNLETLDLSNNQLTDLPELGNLTNL-------EELDLSNNQLTD-----LPPLANLTN-LKTLDLSNNQLTDLKLKEL 292
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 42564988 1114 GELLRNPCSNIKVLILSKCHLKLAGLLCIIQALSDNKNLEELNLSDNA 1161
Cdd:COG4886 293 ELLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLLLLKGLLVTLTTL 340
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
822-1160 |
1.75e-04 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 45.69 E-value: 1.75e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42564988 822 LSEKPSMKLLKKLYISEVEDDINVSECELQDISAAPLLCALHVHNIAMLDLSHNMLGNGTMEKLKQLfassSQMYGALTL 901
Cdd:COG4886 26 LLLLLLLLLLALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLLLLSLLLLGLTDL----GDLTNLTEL 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42564988 902 DLHCNRfgptALFQicecpvlFTRLEVLNVSRNRLTDacgsyLSTIVKNCRALYSLNVEHCSLTSrtiqkVANALDSKSG 981
Cdd:COG4886 102 DLSGNE----ELSN-------LTNLESLDLSGNQLTD-----LPEELANLTNLKELDLSNNQLTD-----LPEPLGNLTN 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42564988 982 LSQLCIGYNNpvsgssIQNLLAKLATLSSFAELSMNGIKLSSQvvdslyalvkTPSLSKLlvgssgigtdgaikvtESLc 1061
Cdd:COG4886 161 LKSLDLSNNQ------LTDLPEELGNLTNLKELDLSNNQITDL----------PEPLGNL----------------TNL- 207
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42564988 1062 yqkeetVKLDLSCCGLASsffikLNQDVTLTSSILEFNVGGNPITEegISALGELlrnpcSNIKVLILSKCHLKlagllc 1141
Cdd:COG4886 208 ------EELDLSGNQLTD-----LPEPLANLTNLETLDLSNNQLTD--LPELGNL-----TNLEELDLSNNQLT------ 263
|
330
....*....|....*....
gi 42564988 1142 IIQALSDNKNLEELNLSDN 1160
Cdd:COG4886 264 DLPPLANLTNLKTLDLSNN 282
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
24-98 |
3.60e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 40.45 E-value: 3.60e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 42564988 24 EQARWANNVGDILKNHGEYVDALKWFRIDYDISVKYLpGKDLLPTCQS---LGEIYLRLENFEEALIYQKKHLQLAEE 98
Cdd:pfam13424 1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRLL-GPDHPLTATTllnLGRLYLELGRYEEALELLERALALAEK 77
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
133-231 |
5.60e-04 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 40.54 E-value: 5.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42564988 133 AKKYFKKAMELAqilkekpppgessgflEEYINAHNNIGMLDLDLDNPEAARTiLKKGLQIcdeeevreyDAARSRLHHN 212
Cdd:COG3063 11 AEEYYEKALELD----------------PDNADALNNLGLLLLEQGRYDEAIA-LEKALKL---------DPNNAEALLN 64
|
90
....*....|....*....
gi 42564988 213 LGNVFMALRSWDEAKKHIE 231
Cdd:COG3063 65 LAELLLELGDYDEALAYLE 83
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
175-282 |
6.35e-04 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 40.15 E-value: 6.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42564988 175 LDLDNPEAARTILKKGLQIcdeeevreyDAARSRLHHNLGNVFMALRSWDEAKKhiemdINICHKINHVQGEAkgYINLA 254
Cdd:COG3063 3 LKLGDLEEAEEYYEKALEL---------DPDNADALNNLGLLLLEQGRYDEAIA-----LEKALKLDPNNAEA--LLNLA 66
|
90 100
....*....|....*....|....*...
gi 42564988 255 ELHNKTQKYIDALLCYGKASSLAKSMQD 282
Cdd:COG3063 67 ELLLELGDYDEALAYLERALELDPSALR 94
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
72-193 |
8.48e-04 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 40.76 E-value: 8.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42564988 72 LGEIYLRLENFEEALIYQKKHLQLAEeandtvEKQRACTQLGrtyhEMFLKSEDDCEAIQsakkYFKKAMELAqilkekP 151
Cdd:COG4235 23 LGRAYLRLGRYDEALAAYEKALRLDP------DNADALLDLA----EALLAAGDTEEAEE----LLERALALD------P 82
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 42564988 152 ppgessgfleEYINAHNNIGMLDLDLDNPEAARTILKKGLQI 193
Cdd:COG4235 83 ----------DNPEALYLLGLAAFQQGDYAEAIAAWQKLLAL 114
|
|
| LRR_4 |
pfam12799 |
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a ... |
1123-1165 |
2.81e-03 |
|
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains.
Pssm-ID: 463713 [Multi-domain] Cd Length: 44 Bit Score: 36.84 E-value: 2.81e-03
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 42564988 1123 NIKVLILSKCHLKlagllcIIQALSDNKNLEELNLSDNAKIED 1165
Cdd:pfam12799 2 NLEVLDLSNNQIT------DIPPLAKLPNLETLDLSGNNKITD 38
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
843-1009 |
3.31e-03 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 41.46 E-value: 3.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42564988 843 INVSECELQDISAAplLCALHvhNIAMLDLSHNMLGN-----GTMEKLKQLFASSSQMY------GALT----LDLHCNR 907
Cdd:COG4886 141 LDLSNNQLTDLPEP--LGNLT--NLKSLDLSNNQLTDlpeelGNLTNLKELDLSNNQITdlpeplGNLTnleeLDLSGNQ 216
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42564988 908 FG--PTALFQicecpvlFTRLEVLNVSRNRLTDacgsyLSTIvKNCRALYSLNVEHCSLTSrtiqkvanaLDSKSGLSQL 985
Cdd:COG4886 217 LTdlPEPLAN-------LTNLETLDLSNNQLTD-----LPEL-GNLTNLEELDLSNNQLTD---------LPPLANLTNL 274
|
170 180
....*....|....*....|....*.
gi 42564988 986 CIGY--NNPVSGSSIQNLLAKLATLS 1009
Cdd:COG4886 275 KTLDlsNNQLTDLKLKELELLLGLNS 300
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
24-99 |
5.39e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 37.46 E-value: 5.39e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 42564988 24 EQARWANNVGDILKNHGEYVDAlkwfrIDYDISVKYLPgkDLLPTCQSLGEIYLRLENFEEALIYQKKHLQLAEEA 99
Cdd:COG3063 24 DNADALNNLGLLLLEQGRYDEA-----IALEKALKLDP--NNAEALLNLAELLLELGDYDEALAYLERALELDPSA 92
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
21-193 |
5.79e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 38.79 E-value: 5.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42564988 21 DRREQARWANNVGDILKNHGEYVDALKWFRIDYDISVKYLPGKDLLPTCQSLGEIYLRLENFEEALIYQKKHLQLAEean 100
Cdd:COG5010 9 RLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDP--- 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42564988 101 dtvEKQRACTQLGRTYHEMflkseddcEAIQSAKKYFKKAMELAQilkekpppgessgfleEYINAHNNIGMLDLDLDNP 180
Cdd:COG5010 86 ---NNPELYYNLALLYSRS--------GDKDEAKEYYEKALALSP----------------DNPNAYSNLAALLLSLGQD 138
|
170
....*....|...
gi 42564988 181 EAARTILKKGLQI 193
Cdd:COG5010 139 DEAKAALQRALGT 151
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
206-279 |
6.70e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 36.98 E-value: 6.70e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 42564988 206 RSRLHHNLGNVFMALRSWDEAKKHIEMDINICHKI---NHVqGEAKGYINLAELHNKTQKYIDALLCYGKASSLAKS 279
Cdd:pfam13424 2 VATALNNLAAVLRRLGRYDEALELLEKALEIARRLlgpDHP-LTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| |
