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Conserved domains on  [gi|15229049|ref|NP_188371|]
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hAT dimerization domain-containing protein [Arabidopsis thaliana]

Protein Classification

DUF659 and Dimer_Tnp_hAT domain-containing protein( domain architecture ID 10250976)

protein containing domains zf-BED, DUF659, and Dimer_Tnp_hAT

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF659 pfam04937
Protein of unknown function (DUF 659); Transposase-like protein with no known function.
 342-493 2.06e-73

Protein of unknown function (DUF 659); Transposase-like protein with no known function.


:

Pssm-ID: 461492  Cd Length: 152  Bit Score: 237.08  E-value: 2.06e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15229049   342 PSSQLFSGRLLQEEMSTIKSYLREYRSSWVVTGCSIMADTWTNTEGKKMISFLVSCPRGVYFHSSIDATDIVEDALSLFK 421
Cdd:pfam04937   1 PSYHELRGTLLDEEVEEIKKQVKEIKKSWERTGCTILSDGWTDTKGRSIINFLVYCPKGTVFLKSVDASDIIHDADYLAE 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15229049   422 CLDKLVDDIGEENVVQVITQNTAIFRSAGKLLEEKRKNLYWTPCAIHCTELVLEDFSKLEFVSECLEKAQRI 493
Cdd:pfam04937  81 LLDSVIEEVGVENVVQVITDNASNYKKAGKLLMEKYPNIFWSPCASHCINLMLEDIGKLDWVKEVIEKAKSI 152
Dimer_Tnp_hAT super family cl05324
hAT family C-terminal dimerization region; This dimerization region is found at the C terminus ...
 716-785 6.60e-05

hAT family C-terminal dimerization region; This dimerization region is found at the C terminus of the transposases of elements belonging to the Activator superfamily (hAT element superfamily). The isolated dimerization region forms extremely stable dimers in vitro.


The actual alignment was detected with superfamily member pfam05699:

Pssm-ID: 399013  Cd Length: 83  Bit Score: 42.25  E-value: 6.60e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15229049   716 RTELDPSAWWQQHGISCLELQRVAVRILSHTCSSVGCEPKWSVYDQVNSQCQSQFGKKSTKDLTYVHYNL 785
Cdd:pfam05699  14 NEDFDPLEWWKENSSRYPNLSKLARDILSIPVSSAASERSFSTLGKVILESRNRLEPLNVEALLCIEDWL 83
zf-BED super family cl02703
BED zinc finger;
133-171 2.63e-04

BED zinc finger;


The actual alignment was detected with superfamily member pfam02892:

Pssm-ID: 445891  Cd Length: 44  Bit Score: 39.27  E-value: 2.63e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 15229049   133 DPGWEHGIAQDERKKKVKCNYCNKIVS--GGINRFKQHLAR 171
Cdd:pfam02892   1 SKVWKYFRELPLDETKAVCRYCGKILSrgGGTSNLIRHLRR 41
zf-BED super family cl02703
BED zinc finger;
11-49 1.76e-03

BED zinc finger;


The actual alignment was detected with superfamily member pfam02892:

Pssm-ID: 445891  Cd Length: 44  Bit Score: 36.96  E-value: 1.76e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 15229049    11 DPGWEHGVAQDQRKKKVKCNYCGKIVS--GGIYRLKQHLAR 49
Cdd:pfam02892   1 SKVWKYFRELPLDETKAVCRYCGKILSrgGGTSNLIRHLRR 41
 
Name Accession Description Interval E-value
DUF659 pfam04937
Protein of unknown function (DUF 659); Transposase-like protein with no known function.
 342-493 2.06e-73

Protein of unknown function (DUF 659); Transposase-like protein with no known function.


Pssm-ID: 461492  Cd Length: 152  Bit Score: 237.08  E-value: 2.06e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15229049   342 PSSQLFSGRLLQEEMSTIKSYLREYRSSWVVTGCSIMADTWTNTEGKKMISFLVSCPRGVYFHSSIDATDIVEDALSLFK 421
Cdd:pfam04937   1 PSYHELRGTLLDEEVEEIKKQVKEIKKSWERTGCTILSDGWTDTKGRSIINFLVYCPKGTVFLKSVDASDIIHDADYLAE 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15229049   422 CLDKLVDDIGEENVVQVITQNTAIFRSAGKLLEEKRKNLYWTPCAIHCTELVLEDFSKLEFVSECLEKAQRI 493
Cdd:pfam04937  81 LLDSVIEEVGVENVVQVITDNASNYKKAGKLLMEKYPNIFWSPCASHCINLMLEDIGKLDWVKEVIEKAKSI 152
Dimer_Tnp_hAT pfam05699
hAT family C-terminal dimerization region; This dimerization region is found at the C terminus ...
 716-785 6.60e-05

hAT family C-terminal dimerization region; This dimerization region is found at the C terminus of the transposases of elements belonging to the Activator superfamily (hAT element superfamily). The isolated dimerization region forms extremely stable dimers in vitro.


Pssm-ID: 399013  Cd Length: 83  Bit Score: 42.25  E-value: 6.60e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15229049   716 RTELDPSAWWQQHGISCLELQRVAVRILSHTCSSVGCEPKWSVYDQVNSQCQSQFGKKSTKDLTYVHYNL 785
Cdd:pfam05699  14 NEDFDPLEWWKENSSRYPNLSKLARDILSIPVSSAASERSFSTLGKVILESRNRLEPLNVEALLCIEDWL 83
zf-BED pfam02892
BED zinc finger;
133-171 2.63e-04

BED zinc finger;


Pssm-ID: 427043  Cd Length: 44  Bit Score: 39.27  E-value: 2.63e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 15229049   133 DPGWEHGIAQDERKKKVKCNYCNKIVS--GGINRFKQHLAR 171
Cdd:pfam02892   1 SKVWKYFRELPLDETKAVCRYCGKILSrgGGTSNLIRHLRR 41
zf-BED pfam02892
BED zinc finger;
11-49 1.76e-03

BED zinc finger;


Pssm-ID: 427043  Cd Length: 44  Bit Score: 36.96  E-value: 1.76e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 15229049    11 DPGWEHGVAQDQRKKKVKCNYCGKIVS--GGIYRLKQHLAR 49
Cdd:pfam02892   1 SKVWKYFRELPLDETKAVCRYCGKILSrgGGTSNLIRHLRR 41
 
Name Accession Description Interval E-value
DUF659 pfam04937
Protein of unknown function (DUF 659); Transposase-like protein with no known function.
 342-493 2.06e-73

Protein of unknown function (DUF 659); Transposase-like protein with no known function.


Pssm-ID: 461492  Cd Length: 152  Bit Score: 237.08  E-value: 2.06e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15229049   342 PSSQLFSGRLLQEEMSTIKSYLREYRSSWVVTGCSIMADTWTNTEGKKMISFLVSCPRGVYFHSSIDATDIVEDALSLFK 421
Cdd:pfam04937   1 PSYHELRGTLLDEEVEEIKKQVKEIKKSWERTGCTILSDGWTDTKGRSIINFLVYCPKGTVFLKSVDASDIIHDADYLAE 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15229049   422 CLDKLVDDIGEENVVQVITQNTAIFRSAGKLLEEKRKNLYWTPCAIHCTELVLEDFSKLEFVSECLEKAQRI 493
Cdd:pfam04937  81 LLDSVIEEVGVENVVQVITDNASNYKKAGKLLMEKYPNIFWSPCASHCINLMLEDIGKLDWVKEVIEKAKSI 152
Dimer_Tnp_hAT pfam05699
hAT family C-terminal dimerization region; This dimerization region is found at the C terminus ...
 716-785 6.60e-05

hAT family C-terminal dimerization region; This dimerization region is found at the C terminus of the transposases of elements belonging to the Activator superfamily (hAT element superfamily). The isolated dimerization region forms extremely stable dimers in vitro.


Pssm-ID: 399013  Cd Length: 83  Bit Score: 42.25  E-value: 6.60e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15229049   716 RTELDPSAWWQQHGISCLELQRVAVRILSHTCSSVGCEPKWSVYDQVNSQCQSQFGKKSTKDLTYVHYNL 785
Cdd:pfam05699  14 NEDFDPLEWWKENSSRYPNLSKLARDILSIPVSSAASERSFSTLGKVILESRNRLEPLNVEALLCIEDWL 83
zf-BED pfam02892
BED zinc finger;
133-171 2.63e-04

BED zinc finger;


Pssm-ID: 427043  Cd Length: 44  Bit Score: 39.27  E-value: 2.63e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 15229049   133 DPGWEHGIAQDERKKKVKCNYCNKIVS--GGINRFKQHLAR 171
Cdd:pfam02892   1 SKVWKYFRELPLDETKAVCRYCGKILSrgGGTSNLIRHLRR 41
zf-BED pfam02892
BED zinc finger;
11-49 1.76e-03

BED zinc finger;


Pssm-ID: 427043  Cd Length: 44  Bit Score: 36.96  E-value: 1.76e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 15229049    11 DPGWEHGVAQDQRKKKVKCNYCGKIVS--GGIYRLKQHLAR 49
Cdd:pfam02892   1 SKVWKYFRELPLDETKAVCRYCGKILSrgGGTSNLIRHLRR 41
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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