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Conserved domains on  [gi|186510147|ref|NP_188293|]
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Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

Protein Classification

pentatricopeptide repeat-containing protein( domain architecture ID 1000098)

pentatricopeptide repeat (PPR)-containing protein may form anti-parallel alpha helices and bind single-stranded RNA in a sequence-specific and modular manner

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN03218 super family cl33664
maturation of RBCL 1; Provisional
 146-507 2.47e-40

maturation of RBCL 1; Provisional


The actual alignment was detected with superfamily member PLN03218:

Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 155.81  E-value: 2.47e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186510147  146 KLGFEPDLVTFTSLLNGYCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVT 225
Cdd:PLN03218  430 KLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHT 509

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186510147  226 YNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALIDAFVKVGKLMEAkelYNVMIQMS-----VYPDVFTYGSLI 300
Cdd:PLN03218  510 FGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRA---FDVLAEMKaethpIDPDHITVGALM 586

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186510147  301 NGLCMYGLLDEARQMFYLMERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRPD 380
Cdd:PLN03218  587 KACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLD 666

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186510147  381 VAQEVFNQMSSRRAPPDIRTYNVLLdGLCCNGK-VEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVEDAFDLFCSL 459
Cdd:PLN03218  667 KAFEILQDARKQGIKLGTVSYSSLM-GACSNAKnWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEM 745

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*...
gi 186510147  460 FSKGMKPNVITYTTMISGFCRRGLIHEADSLFKKMKEDGFLPNESVYK 507
Cdd:PLN03218  746 KRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCR 793
PLN03218 super family cl33664
maturation of RBCL 1; Provisional
 81-202 1.65e-05

maturation of RBCL 1; Provisional


The actual alignment was detected with superfamily member PLN03218:

Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 47.56  E-value: 1.65e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186510147   81 PSIIDFTRLLSVIAKMNRYDVVISLFEQMQILGIPPLLCTCNIVMHCVCLSSQPCRASCFLGKMMKLGFEPDLVTFTSLL 160
Cdd:PLN03218  682 LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 186510147  161 NGYCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIRcLCKNR 202
Cdd:PLN03218  762 VASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITG-LCLRR 802
 
Name Accession Description Interval E-value
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 146-507 2.47e-40

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 155.81  E-value: 2.47e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186510147  146 KLGFEPDLVTFTSLLNGYCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVT 225
Cdd:PLN03218  430 KLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHT 509

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186510147  226 YNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALIDAFVKVGKLMEAkelYNVMIQMS-----VYPDVFTYGSLI 300
Cdd:PLN03218  510 FGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRA---FDVLAEMKaethpIDPDHITVGALM 586

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186510147  301 NGLCMYGLLDEARQMFYLMERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRPD 380
Cdd:PLN03218  587 KACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLD 666

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186510147  381 VAQEVFNQMSSRRAPPDIRTYNVLLdGLCCNGK-VEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVEDAFDLFCSL 459
Cdd:PLN03218  667 KAFEILQDARKQGIKLGTVSYSSLM-GACSNAKnWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEM 745

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*...
gi 186510147  460 FSKGMKPNVITYTTMISGFCRRGLIHEADSLFKKMKEDGFLPNESVYK 507
Cdd:PLN03218  746 KRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCR 793
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 432-480 1.23e-16

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 73.55  E-value: 1.23e-16
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 186510147  432 NIVTYTIIIQGMCKLGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFCR 480
Cdd:pfam13041   2 DVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 469-503 5.25e-08

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 48.61  E-value: 5.25e-08
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 186510147  469 ITYTTMISGFCRRGLIHEADSLFKKMKEDGFLPNE 503
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 81-202 1.65e-05

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 47.56  E-value: 1.65e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186510147   81 PSIIDFTRLLSVIAKMNRYDVVISLFEQMQILGIPPLLCTCNIVMHCVCLSSQPCRASCFLGKMMKLGFEPDLVTFTSLL 160
Cdd:PLN03218  682 LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 186510147  161 NGYCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIRcLCKNR 202
Cdd:PLN03218  762 VASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITG-LCLRR 802
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 120-165 1.66e-05

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 41.97  E-value: 1.66e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 186510147  120 TCNIVMHCVCLSSQPCRASCFLGKMMKLGFEPDLVTFTSLLNGYCH 165
Cdd:pfam13041   5 TYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
 
Name Accession Description Interval E-value
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 146-507 2.47e-40

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 155.81  E-value: 2.47e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186510147  146 KLGFEPDLVTFTSLLNGYCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVT 225
Cdd:PLN03218  430 KLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHT 509

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186510147  226 YNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALIDAFVKVGKLMEAkelYNVMIQMS-----VYPDVFTYGSLI 300
Cdd:PLN03218  510 FGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRA---FDVLAEMKaethpIDPDHITVGALM 586

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186510147  301 NGLCMYGLLDEARQMFYLMERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRPD 380
Cdd:PLN03218  587 KACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLD 666

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186510147  381 VAQEVFNQMSSRRAPPDIRTYNVLLdGLCCNGK-VEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVEDAFDLFCSL 459
Cdd:PLN03218  667 KAFEILQDARKQGIKLGTVSYSSLM-GACSNAKnWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEM 745

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*...
gi 186510147  460 FSKGMKPNVITYTTMISGFCRRGLIHEADSLFKKMKEDGFLPNESVYK 507
Cdd:PLN03218  746 KRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCR 793
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 88-493 9.63e-27

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 114.20  E-value: 9.63e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186510147  88 RLLSVIAKM---NRYDVVISLFEQMQIlGIP---PLLCTCNIVMHCVCLSSQPCRASCFlGKMMKLGFEPDLVTFTSLLN 161
Cdd:PLN03081  89 SLCSQIEKLvacGRHREALELFEILEA-GCPftlPASTYDALVEACIALKSIRCVKAVY-WHVESSGFEPDQYMMNRVLL 166

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186510147 162 GYCHWNRIEDAIALFDqilGMGFKpNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGD 241
Cdd:PLN03081 167 MHVKCGMLIDARRLFD---EMPER-NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186510147 242 AAWLLRDMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMSvypdVFTYGSLINGLCMYGLLDEARQMFYLMER 321
Cdd:PLN03081 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKT----TVAWNSMLAGYALHGYSEEALCLYYEMRD 318

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186510147 322 NGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQMSSRrappDIRTY 401
Cdd:PLN03081 319 SGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK----NLISW 394

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186510147 402 NVLLDGLCCNGKVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVEDAFDLFCSLF-SKGMKPNVITYTTMISGFCR 480
Cdd:PLN03081 395 NALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSeNHRIKPRAMHYACMIELLGR 474

                        410
                 ....*....|...
gi 186510147 481 RGLIHEADSLFKK 493
Cdd:PLN03081 475 EGLLDEAYAMIRR 487
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 86-481 1.21e-24

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 108.43  E-value: 1.21e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186510147   86 FTRLLSVIAKMNRYDVVISLFEQMQILGIppllctcnivmhcvclssqpcrascflgkmmklgfepdlvtftsllngych 165
Cdd:PLN03218  475 YTTLISTCAKSGKVDAMFEVFHEMVNAGV--------------------------------------------------- 503

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186510147  166 wnriedaialfdqilgmgfKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWL 245
Cdd:PLN03218  504 -------------------EANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDV 564

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186510147  246 LRDMMKRR--IEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMSV--YPDVFTYGslINGLCMYGLLDEARQMFYLMER 321
Cdd:PLN03218  565 LAEMKAEThpIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIkgTPEVYTIA--VNSCSQKGDWDFALSIYDDMKK 642

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186510147  322 NGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQMSSRRAPPDIRTY 401
Cdd:PLN03218  643 KGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTM 722

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186510147  402 NVLLDGLCCNGKVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVEDAFDLFCSLFSKGMKPNVITYTTmISGFCRR 481
Cdd:PLN03218  723 NALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRC-ITGLCLR 801
PLN03077 PLN03077
Protein ECB2; Provisional
 142-495 2.37e-24

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 107.24  E-value: 2.37e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186510147 142 GKMMklgfEPDLVTFTSLLNGYCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRP 221
Cdd:PLN03077 145 GKMP----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFEL 220

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186510147 222 NVVTYNALVTGLCeigRWGD--AAWLLRDMMKRRiepNVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSL 299
Cdd:PLN03077 221 DVDVVNALITMYV---KCGDvvSARLVFDRMPRR---DCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSV 294

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186510147 300 INGLCMYGLLDEARQMFYLMERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVantiTYTVLIQGYCLVGRP 379
Cdd:PLN03077 295 ISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAV----SWTAMISGYEKNGLP 370

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186510147 380 DVAQEVFNQMSSRRAPPDIRTYNVLLDGLCCNGKVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVEDAFDLFCSL 459
Cdd:PLN03077 371 DKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNI 450

                        330       340       350
                 ....*....|....*....|....*....|....*.
gi 186510147 460 FSKgmkpNVITYTTMISGFCRRGLIHEADSLFKKMK 495
Cdd:PLN03077 451 PEK----DVISWTSIIAGLRLNNRCFEALIFFRQML 482
PLN03077 PLN03077
Protein ECB2; Provisional
 152-502 3.11e-24

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 106.86  E-value: 3.11e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186510147 152 DLVTFTSLLNGYCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIRC--LCKNRHLnhAVELFNQMGTNGSRPNVVTYNAL 229
Cdd:PLN03077 252 DCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISAceLLGDERL--GREMHGYVVKTGFAVDVSVCNSL 329

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186510147 230 VTGLCEIGRWGDAAWLLRDMMKRriepNVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLL 309
Cdd:PLN03077 330 IQMYLSLGSWGEAEKVFSRMETK----DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDL 405

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186510147 310 DEARQMFYLMERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKgvvaNTITYTVLIQGYCLVGRPDVAQEVFNQM 389
Cdd:PLN03077 406 DVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK----DVISWTSIIAGLRLNNRCFEALIFFRQM 481

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186510147 390 SSRRAP---------------------PDIRTYnVLLDGLCCNGKVEKALMIFeYMRKREMDI----------NIVTYTI 438
Cdd:PLN03077 482 LLTLKPnsvtliaalsacarigalmcgKEIHAH-VLRTGIGFDGFLPNALLDL-YVRCGRMNYawnqfnshekDVVSWNI 559

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 186510147 439 IIQGMCKLGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGLIHEADSLFKKMKED-GFLPN 502
Cdd:PLN03077 560 LLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKySITPN 624
PLN03077 PLN03077
Protein ECB2; Provisional
 137-502 2.74e-22

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 100.69  E-value: 2.74e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186510147 137 ASCFLGKMMKLGFEPDLVTFTSLLN---GYCHWNRIEDAIAlfdQILGMGFKPNVVTYTTLIRCLCKNRHLNHAVELFNQ 213
Cdd:PLN03077 171 ALCLYHRMLWAGVRPDVYTFPCVLRtcgGIPDLARGREVHA---HVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDR 247

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186510147 214 MgtngSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDV 293
Cdd:PLN03077 248 M----PRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDV 323

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186510147 294 FTYGSLINGLCMYGLLDEARQMFYLMERNgcypNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGY 373
Cdd:PLN03077 324 SVCNSLIQMYLSLGSWGEAEKVFSRMETK----DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSAC 399

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186510147 374 CLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLLDGLCCNGKVEKALMIFEYMRKRemdiNIVTYTIIIQGMCKLGKVEDAF 453
Cdd:PLN03077 400 ACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK----DVISWTSIIAGLRLNNRCFEAL 475

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 186510147 454 DLFCSLFSKgMKPNVITYTTMISGFCRRGL------IHeADSLFKKMKEDGFLPN 502
Cdd:PLN03077 476 IFFRQMLLT-LKPNSVTLIAALSACARIGAlmcgkeIH-AHVLRTGIGFDGFLPN 528
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 167-502 4.77e-21

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 96.86  E-value: 4.77e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186510147 167 NRIEDAIALFDQI-LGMGFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWL 245
Cdd:PLN03081 101 GRHREALELFEILeAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRL 180

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186510147 246 LRDMMKRriepNVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLLDEARQMFYLMERNGCY 325
Cdd:PLN03081 181 FDEMPER----NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVV 256

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186510147 326 PNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVAntitYTVLIQGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLL 405
Cdd:PLN03081 257 GDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVA----WNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMI 332

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186510147 406 DGLCCNGKVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVEDAFDLFCSLFSKgmkpNVITYTTMISGFCRRGLIH 485
Cdd:PLN03081 333 RIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK----NLISWNALIAGYGNHGRGT 408

                        330
                 ....*....|....*..
gi 186510147 486 EADSLFKKMKEDGFLPN 502
Cdd:PLN03081 409 KAVEMFERMIAEGVAPN 425
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 185-494 3.67e-20

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 94.17  E-value: 3.67e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186510147 185 KPNVVTYTTLIRCLCKNRHlNHAVELFNQMGTNGS-RPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTA 263
Cdd:PLN03081  85 KSGVSLCSQIEKLVACGRH-REALELFEILEAGCPfTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186510147 264 LIDAFVKVGKLMEAKELYNVMIQMSVYpdvfTYGSLINGLCMYGLLDEARQMFYLMERNGCYPNEVIYTTLIHGFCKSKR 343
Cdd:PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLA----SWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGS 239

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186510147 344 VEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQMSSRrappDIRTYNVLLDGLCCNGKVEKALMIFEY 423
Cdd:PLN03081 240 ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEK----TTVAWNSMLAGYALHGYSEEALCLYYE 315

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 186510147 424 MRKREMDINIVTYTIIIQGMCKLGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGLIHEADSLFKKM 494
Cdd:PLN03081 316 MRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRM 386
PLN03077 PLN03077
Protein ECB2; Provisional
 143-455 5.63e-17

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 84.13  E-value: 5.63e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186510147 143 KMMKL-GFEPDLVTFTSLLNGYCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMgtngSRP 221
Cdd:PLN03077 378 ALMEQdNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNI----PEK 453

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186510147 222 NVVTYNALVTGLCEIGRWGDAAWLLRdMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLIN 301
Cdd:PLN03077 454 DVISWTSIIAGLRLNNRCFEALIFFR-QMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLD 532

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186510147 302 GLCMYGLLDEARQMFYLMErngcypneviyttlihgfckskrvedgmkifyemsqKGVVAntitYTVLIQGYCLVGRPDV 381
Cdd:PLN03077 533 LYVRCGRMNYAWNQFNSHE------------------------------------KDVVS----WNILLTGYVAHGKGSM 572

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 186510147 382 AQEVFNQMSSRRAPPDIRTYNVLLDGLCCNGKVEKALMIFEYMR-KREMDINIVTYTIIIQGMCKLGKVEDAFDL 455
Cdd:PLN03077 573 AVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEeKYSITPNLKHYACVVDLLGRAGKLTEAYNF 647
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 432-480 1.23e-16

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 73.55  E-value: 1.23e-16
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 186510147  432 NIVTYTIIIQGMCKLGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFCR 480
Cdd:pfam13041   2 DVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 186-234 2.77e-15

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 69.70  E-value: 2.77e-15
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 186510147  186 PNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLC 234
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLC 49
PLN03077 PLN03077
Protein ECB2; Provisional
 157-503 2.90e-15

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 78.74  E-value: 2.90e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186510147 157 TSLLNGYCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIRcLCKN-RHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCE 235
Cdd:PLN03077  55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFR-LCEWkRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVR 133

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186510147 236 IGRWGDAAWLLRDMMKRriepNVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGlCMyGLLDEA--R 313
Cdd:PLN03077 134 FGELVHAWYVFGKMPER----DLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRT-CG-GIPDLArgR 207

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186510147 314 QMFYLMERNGcYPNEV-IYTTLIHGFCKSKRVEDGMKIFYEMSqkgvVANTITYTVLIQGYCLVGRPDVAQEVFNQMSSR 392
Cdd:PLN03077 208 EVHAHVVRFG-FELDVdVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMREL 282

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186510147 393 RAPPDIRTYNVLLDGLCCNGKVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVEDAFdlfcSLFSKGMKPNVITYT 472
Cdd:PLN03077 283 SVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAE----KVFSRMETKDAVSWT 358

                        330       340       350
                 ....*....|....*....|....*....|.
gi 186510147 473 TMISGFCRRGLIHEADSLFKKMKEDGFLPNE 503
Cdd:PLN03077 359 AMISGYEKNGLPDKALETYALMEQDNVSPDE 389
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 396-445 1.20e-14

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 68.16  E-value: 1.20e-14
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 186510147  396 PDIRTYNVLLDGLCCNGKVEKALMIFEYMRKREMDINIVTYTIIIQGMCK 445
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 151-200 4.89e-14

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 66.23  E-value: 4.89e-14
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 186510147  151 PDLVTFTSLLNGYCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIRCLCK 200
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 326-374 6.00e-14

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 65.85  E-value: 6.00e-14
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 186510147  326 PNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYC 374
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLC 49
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 256-304 1.49e-13

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 64.69  E-value: 1.49e-13
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 186510147  256 PNVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLC 304
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLC 49
PLN03077 PLN03077
Protein ECB2; Provisional
 44-370 1.84e-13

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 72.96  E-value: 1.84e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186510147  44 WIRAFSSYRKilrNGLHNlqfnDALDLFTRMVHSRPLPSIIDFTRLLSVIAKMNRYDVVISLFEQMQILGIPPLLCTCN- 122
Cdd:PLN03077 357 WTAMISGYEK---NGLPD----KALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANa 429

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186510147 123 -IVMH--CVCLSSQPcrascflgKMMKLGFEPDLVTFTSLLNGYCHWNRIEDAIALFDQILgMGFKPNVVTYTTLIRCLC 199
Cdd:PLN03077 430 lIEMYskCKCIDKAL--------EVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQML-LTLKPNSVTLIAALSACA 500

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186510147 200 KNRHLN-----HAVELFNQMGTNGSRPN-------------------------VVTYNALVTGLCEIGRWGDAAWLLRDM 249
Cdd:PLN03077 501 RIGALMcgkeiHAHVLRTGIGFDGFLPNalldlyvrcgrmnyawnqfnshekdVVSWNILLTGYVAHGKGSMAVELFNRM 580

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186510147 250 MKRRIEPNVITFTALIDAFVKVGKLMEAKELYNVM-IQMSVYPDVFTYGSLINGLCMYGLLDEARQmfyLMERNGCYPNE 328
Cdd:PLN03077 581 VESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMeEKYSITPNLKHYACVVDLLGRAGKLTEAYN---FINKMPITPDP 657

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*
gi 186510147 329 VIYTTLIHGFCKSKRVEDGmkifyEMSQKGVV---ANTITYTVLI 370
Cdd:PLN03077 658 AVWGALLNACRIHRHVELG-----ELAAQHIFeldPNSVGYYILL 697
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 150-431 4.49e-13

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 71.83  E-value: 4.49e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186510147 150 EPDLVTFTSLLNGYCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNAL 229
Cdd:PLN03081 287 EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTAL 366

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186510147 230 VTGLCEIGRWGDAAWLLrDMMKRRiepNVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLL 309
Cdd:PLN03081 367 VDLYSKWGRMEDARNVF-DRMPRK---NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLS 442

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186510147 310 DEARQMFYLMERN-GCYPNEVIYTTLIHGFCKSKRVEDGmkifYEMSQKGVVANTIT-YTVL-----IQGYCLVGRpdVA 382
Cdd:PLN03081 443 EQGWEIFQSMSENhRIKPRAMHYACMIELLGREGLLDEA----YAMIRRAPFKPTVNmWAALltacrIHKNLELGR--LA 516

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*....
gi 186510147 383 QEVFNQMSsrraPPDIRTYNVLLDGLCCNGKVEKALMIFEYMRKREMDI 431
Cdd:PLN03081 517 AEKLYGMG----PEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSM 561
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 221-270 7.98e-13

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 62.77  E-value: 7.98e-13
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 186510147  221 PNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALIDAFVK 270
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 362-409 9.06e-13

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 62.77  E-value: 9.06e-13
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 186510147  362 NTITYTVLIQGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLLDGLC 409
Cdd:pfam13041   2 DVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLC 49
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 291-340 1.23e-12

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 62.38  E-value: 1.23e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 186510147  291 PDVFTYGSLINGLCMYGLLDEARQMFYLMERNGCYPNEVIYTTLIHGFCK 340
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 144-359 3.01e-12

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 69.13  E-value: 3.01e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186510147 144 MMKLGFEPDLVTFTSLLNGYCHWNRIEDAIALFDQILgmgfKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNV 223
Cdd:PLN03081 351 LIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNH 426

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186510147 224 VTYNALVTGlCEIGRWGDAAWLLRDMMKR--RIEPNVITFTALIDAFVKVGKLMEAkelYNVMIQMSVYPDVFTYGSLIN 301
Cdd:PLN03081 427 VTFLAVLSA-CRYSGLSEQGWEIFQSMSEnhRIKPRAMHYACMIELLGREGLLDEA---YAMIRRAPFKPTVNMWAALLT 502

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 186510147 302 GLCMYGLLDEAR---QMFYLMErngcyPNEV-IYTTLIHGFCKSKRVEDGMKIFYEMSQKGV 359
Cdd:PLN03081 503 ACRIHKNLELGRlaaEKLYGMG-----PEKLnNYVVLLNLYNSSGRQAEAAKVVETLKRKGL 559
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 462-495 2.41e-11

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 58.13  E-value: 2.41e-11
                          10        20        30
                  ....*....|....*....|....*....|....
gi 186510147  462 KGMKPNVITYTTMISGFCRRGLIHEADSLFKKMK 495
Cdd:pfam12854   1 KGLKPDVVTYNTLINGLCRAGRVDEAFELLDEME 34
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 182-214 1.75e-10

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 55.81  E-value: 1.75e-10
                          10        20        30
                  ....*....|....*....|....*....|...
gi 186510147  182 MGFKPNVVTYTTLIRCLCKNRHLNHAVELFNQM 214
Cdd:pfam12854   1 KGLKPDVVTYNTLINGLCRAGRVDEAFELLDEM 33
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 466-506 2.57e-10

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 55.83  E-value: 2.57e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 186510147  466 PNVITYTTMISGFCRRGLIHEADSLFKKMKEDGFLPNESVY 506
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTY 41
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 469-499 4.64e-08

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 49.00  E-value: 4.64e-08
                          10        20        30
                  ....*....|....*....|....*....|.
gi 186510147  469 ITYTTMISGFCRRGLIHEADSLFKKMKEDGF 499
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 469-503 5.25e-08

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 48.61  E-value: 5.25e-08
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 186510147  469 ITYTTMISGFCRRGLIHEADSLFKKMKEDGFLPNE 503
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 322-355 7.18e-08

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 48.50  E-value: 7.18e-08
                          10        20        30
                  ....*....|....*....|....*....|....
gi 186510147  322 NGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMS 355
Cdd:pfam12854   1 KGLKPDVVTYNTLINGLCRAGRVDEAFELLDEME 34
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 396-425 8.08e-08

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 48.11  E-value: 8.08e-08
                          10        20        30
                  ....*....|....*....|....*....|
gi 186510147  396 PDIRTYNVLLDGLCCNGKVEKALMIFEYMR 425
Cdd:pfam12854   5 PDVVTYNTLINGLCRAGRVDEAFELLDEME 34
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 175-230 1.45e-07

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 48.51  E-value: 1.45e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 186510147  175 LFDQILGMGFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALV 230
Cdd:pfam13812   2 ILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAIL 57
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 357-390 2.05e-07

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 46.96  E-value: 2.05e-07
                          10        20        30
                  ....*....|....*....|....*....|....
gi 186510147  357 KGVVANTITYTVLIQGYCLVGRPDVAQEVFNQMS 390
Cdd:pfam12854   1 KGLKPDVVTYNTLINGLCRAGRVDEAFELLDEME 34
PPR_long pfam17177
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large ...
 312-426 4.62e-07

Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large family of modular RNA-binding proteins which mediate several aspects of gene expression primarily in organelles but also in the nucleus. PPR_long is the region of Arabidopsis protein-only RNase P (PRORP) enzyme that consists of up to eleven alpha-helices. PRORPs are a class of RNA processing enzymes that catalyze maturation of the 5' end of precursor tRNAs in Eukaryotes. All PPR proteins contain tandemly repeated sequence motifs (the PPR motifs) which can vary in number. The series of helix-turn-helix motifs formed by PPR motifs throughout the protein produces a superheros with a central groove that allows the protein to bind RNA. Proteins containing PPR motifs are known to have roles in transcription, RNA processing, splicing, stability, editing, and translation. Over a decade after the discovery of PPR proteins, the super-helical structure was confirmed. The protein-only mitochondrial RNase P crystal structure from Arabidopsis thaliana (PRORP1) confirmed the role of its PPR motifs in pre-tRNA binding and suggest it has evolved independently from other RNase P proteins that rely on catalytic RNA.


Pssm-ID: 407303 [Multi-domain]  Cd Length: 212  Bit Score: 50.47  E-value: 4.62e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186510147  312 ARQMFYLMERNGCYPNEVIYTTLIHgFC----------KSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRPDV 381
Cdd:pfam17177  30 ALALYDAAKAEGVRLAQYHYNVLLY-LCskaadatdlkPQLAADRGFEVFEAMKAQGVSPNEATYTAVARLAAAKGDGDL 108

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 186510147  382 AQEVFNQMSSRRAPPDIRTYNVLLDGLCCNGKVEKALMIFEYMRK 426
Cdd:pfam17177 109 AFDLVKEMEAAGVSPRLRSYSPALHAYCEAGDADKAYEVEEHMLA 153
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 245-301 5.24e-07

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 46.58  E-value: 5.24e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 186510147  245 LLRDMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLIN 301
Cdd:pfam13812   2 ILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILG 58
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 210-270 8.98e-07

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 46.20  E-value: 8.98e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 186510147  210 LFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALIDAFVK 270
Cdd:pfam13812   2 ILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVIGG 62
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 287-320 1.36e-06

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 44.64  E-value: 1.36e-06
                          10        20        30
                  ....*....|....*....|....*....|....
gi 186510147  287 MSVYPDVFTYGSLINGLCMYGLLDEARQMFYLME 320
Cdd:pfam12854   1 KGLKPDVVTYNTLINGLCRAGRVDEAFELLDEME 34
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 349-411 1.38e-06

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 45.43  E-value: 1.38e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 186510147  349 KIFYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLLdGLCCN 411
Cdd:pfam13812   1 SILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAIL-GVIGG 62
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 432-456 1.42e-06

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 44.64  E-value: 1.42e-06
                          10        20
                  ....*....|....*....|....*
gi 186510147  432 NIVTYTIIIQGMCKLGKVEDAFDLF 456
Cdd:pfam12854   6 DVVTYNTLINGLCRAGRVDEAFELL 30
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 294-328 2.07e-06

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 44.37  E-value: 2.07e-06
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 186510147  294 FTYGSLINGLCMYGLLDEARQMFYLMERNGCYPNE 328
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 148-178 3.12e-06

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 43.87  E-value: 3.12e-06
                          10        20        30
                  ....*....|....*....|....*....|.
gi 186510147  148 GFEPDLVTFTSLLNGYCHWNRIEDAIALFDQ 178
Cdd:pfam12854   2 GLKPDVVTYNTLINGLCRAGRVDEAFELLDE 32
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 154-188 3.38e-06

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 43.60  E-value: 3.38e-06
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 186510147  154 VTFTSLLNGYCHWNRIEDAIALFDQILGMGFKPNV 188
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 329-363 4.54e-06

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 43.21  E-value: 4.54e-06
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 186510147  329 VIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANT 363
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 434-468 4.67e-06

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 43.21  E-value: 4.67e-06
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 186510147  434 VTYTIIIQGMCKLGKVEDAFDLFCSLFSKGMKPNV 468
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 217-249 6.38e-06

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 42.72  E-value: 6.38e-06
                          10        20        30
                  ....*....|....*....|....*....|...
gi 186510147  217 NGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDM 249
Cdd:pfam12854   1 KGLKPDVVTYNTLINGLCRAGRVDEAFELLDEM 33
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 252-284 7.04e-06

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 42.72  E-value: 7.04e-06
                          10        20        30
                  ....*....|....*....|....*....|...
gi 186510147  252 RRIEPNVITFTALIDAFVKVGKLMEAKELYNVM 284
Cdd:pfam12854   1 KGLKPDVVTYNTLINGLCRAGRVDEAFELLDEM 33
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 189-223 7.63e-06

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 42.83  E-value: 7.63e-06
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 186510147  189 VTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNV 223
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 224-258 7.94e-06

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 42.44  E-value: 7.94e-06
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 186510147  224 VTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNV 258
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 319-373 9.37e-06

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 43.12  E-value: 9.37e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 186510147  319 MERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGY 373
Cdd:pfam13812   6 MVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVI 60
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 329-359 1.32e-05

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 42.07  E-value: 1.32e-05
                          10        20        30
                  ....*....|....*....|....*....|.
gi 186510147  329 VIYTTLIHGFCKSKRVEDGMKIFYEMSQKGV 359
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 399-433 1.53e-05

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 41.67  E-value: 1.53e-05
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 186510147  399 RTYNVLLDGLCCNGKVEKALMIFEYMRKREMDINI 433
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 81-202 1.65e-05

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 47.56  E-value: 1.65e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186510147   81 PSIIDFTRLLSVIAKMNRYDVVISLFEQMQILGIPPLLCTCNIVMHCVCLSSQPCRASCFLGKMMKLGFEPDLVTFTSLL 160
Cdd:PLN03218  682 LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 186510147  161 NGYCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIRcLCKNR 202
Cdd:PLN03218  762 VASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITG-LCLRR 802
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 120-165 1.66e-05

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 41.97  E-value: 1.66e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 186510147  120 TCNIVMHCVCLSSQPCRASCFLGKMMKLGFEPDLVTFTSLLNGYCH 165
Cdd:pfam13041   5 TYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 400-427 3.89e-05

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 40.53  E-value: 3.89e-05
                          10        20
                  ....*....|....*....|....*...
gi 186510147  400 TYNVLLDGLCCNGKVEKALMIFEYMRKR 427
Cdd:pfam01535   2 TYNSLISGYCKNGKLEEALELFKEMKEK 29
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 294-324 4.29e-05

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 40.53  E-value: 4.29e-05
                          10        20        30
                  ....*....|....*....|....*....|.
gi 186510147  294 FTYGSLINGLCMYGLLDEARQMFYLMERNGC 324
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 462-502 9.33e-05

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 40.42  E-value: 9.33e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 186510147  462 KGMKPNVITYTTMISGFCRRGLIHEADSLFKKMKEDGFLPN 502
Cdd:pfam13812   9 DGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPT 49
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 189-218 9.41e-05

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 39.37  E-value: 9.41e-05
                          10        20        30
                  ....*....|....*....|....*....|
gi 186510147  189 VTYTTLIRCLCKNRHLNHAVELFNQMGTNG 218
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKG 30
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 298-496 1.34e-04

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 44.48  E-value: 1.34e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186510147 298 SLINGLCMYGLLDEARQMFYLMERNGCYPNEV-IYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLV 376
Cdd:PLN03081  92 SQIEKLVACGRHREALELFEILEAGCPFTLPAsTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKC 171

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186510147 377 GRPDVAQEVFNQMSSRrappDIRTYNVLLDGLCCNGKVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVEDAFDLF 456
Cdd:PLN03081 172 GMLIDARRLFDEMPER----NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLH 247

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 186510147 457 CSLFSKGMKPNVITYTTMISGFCRRGLIHEADSLFKKMKE 496
Cdd:PLN03081 248 CCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE 287
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 141-202 1.77e-04

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 39.65  E-value: 1.77e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 186510147  141 LGKMMKLGFEPDLVTFTSLLNGYCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIRcLCKNR 202
Cdd:pfam13812   3 LREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILG-VIGGR 63
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 385-444 2.52e-04

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 39.26  E-value: 2.52e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 186510147  385 VFNQMSSRRAPPDIRTYNVLLDGLCCNGKVEKALMIFEYMRKREMDINIVTYTIIIqGMC 444
Cdd:pfam13812   2 ILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAIL-GVI 60
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 259-293 2.75e-04

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 38.21  E-value: 2.75e-04
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 186510147  259 ITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDV 293
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 434-464 2.94e-04

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 38.22  E-value: 2.94e-04
                          10        20        30
                  ....*....|....*....|....*....|.
gi 186510147  434 VTYTIIIQGMCKLGKVEDAFDLFCSLFSKGM 464
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 420-481 3.62e-04

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 38.88  E-value: 3.62e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 186510147  420 IFEYMRKREMDINIVTYTIIIQGMCKLGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFCRR 481
Cdd:pfam13812   2 ILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVIGGR 63
PPR_long pfam17177
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large ...
 169-284 3.91e-04

Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large family of modular RNA-binding proteins which mediate several aspects of gene expression primarily in organelles but also in the nucleus. PPR_long is the region of Arabidopsis protein-only RNase P (PRORP) enzyme that consists of up to eleven alpha-helices. PRORPs are a class of RNA processing enzymes that catalyze maturation of the 5' end of precursor tRNAs in Eukaryotes. All PPR proteins contain tandemly repeated sequence motifs (the PPR motifs) which can vary in number. The series of helix-turn-helix motifs formed by PPR motifs throughout the protein produces a superheros with a central groove that allows the protein to bind RNA. Proteins containing PPR motifs are known to have roles in transcription, RNA processing, splicing, stability, editing, and translation. Over a decade after the discovery of PPR proteins, the super-helical structure was confirmed. The protein-only mitochondrial RNase P crystal structure from Arabidopsis thaliana (PRORP1) confirmed the role of its PPR motifs in pre-tRNA binding and suggest it has evolved independently from other RNase P proteins that rely on catalytic RNA.


Pssm-ID: 407303 [Multi-domain]  Cd Length: 212  Bit Score: 42.00  E-value: 3.91e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186510147  169 IEDAIALFDQILGMGFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRD 248
Cdd:pfam17177  71 ADRGFEVFEAMKAQGVSPNEATYTAVARLAAAKGDGDLAFDLVKEMEAAGVSPRLRSYSPALHAYCEAGDADKAYEVEEH 150

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 186510147  249 MMKRRIEPNVITFTALIDAFVKVGKlmeAKELYNVM 284
Cdd:pfam17177 151 MLAHGVELEEPELAALLKVSAKAGR---ADKVYAYL 183
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 154-184 6.58e-04

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 37.06  E-value: 6.58e-04
                          10        20        30
                  ....*....|....*....|....*....|.
gi 186510147  154 VTFTSLLNGYCHWNRIEDAIALFDQILGMGF 184
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR_long pfam17177
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large ...
 382-506 1.45e-03

Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large family of modular RNA-binding proteins which mediate several aspects of gene expression primarily in organelles but also in the nucleus. PPR_long is the region of Arabidopsis protein-only RNase P (PRORP) enzyme that consists of up to eleven alpha-helices. PRORPs are a class of RNA processing enzymes that catalyze maturation of the 5' end of precursor tRNAs in Eukaryotes. All PPR proteins contain tandemly repeated sequence motifs (the PPR motifs) which can vary in number. The series of helix-turn-helix motifs formed by PPR motifs throughout the protein produces a superheros with a central groove that allows the protein to bind RNA. Proteins containing PPR motifs are known to have roles in transcription, RNA processing, splicing, stability, editing, and translation. Over a decade after the discovery of PPR proteins, the super-helical structure was confirmed. The protein-only mitochondrial RNase P crystal structure from Arabidopsis thaliana (PRORP1) confirmed the role of its PPR motifs in pre-tRNA binding and suggest it has evolved independently from other RNase P proteins that rely on catalytic RNA.


Pssm-ID: 407303 [Multi-domain]  Cd Length: 212  Bit Score: 40.07  E-value: 1.45e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186510147  382 AQEVFNQMSSRRAPPDIRTYNVLLDgLCCNGKVEKALM----------IFEYMRKREMDINIVTYTIIIQGMCKLGKVED 451
Cdd:pfam17177  30 ALALYDAAKAEGVRLAQYHYNVLLY-LCSKAADATDLKpqlaadrgfeVFEAMKAQGVSPNEATYTAVARLAAAKGDGDL 108

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 186510147  452 AFDLFCSLFSKGMKPNVITYTTMISGFCRRGLIHEADSLFKKMKEDGFLPNESVY 506
Cdd:pfam17177 109 AFDLVKEMEAAGVSPRLRSYSPALHAYCEAGDADKAYEVEEHMLAHGVELEEPEL 163
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 370-498 1.46e-03

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 41.39  E-value: 1.46e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186510147 370 IQGYCLVGRPDVAQEVFnQMSSRRAPPDI--RTYNVLLDGLCCNGKVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLG 447
Cdd:PLN03081  94 IEKLVACGRHREALELF-EILEAGCPFTLpaSTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCG 172

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 186510147 448 KVEDAFDLFCSLFSKgmkpNVITYTTMISGFCRRGLIHEADSLFKKMKEDG 498
Cdd:PLN03081 173 MLIDARRLFDEMPER----NLASWGTIIGGLVDAGNYREAFALFREMWEDG 219
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 364-392 1.83e-03

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 35.90  E-value: 1.83e-03
                          10        20
                  ....*....|....*....|....*....
gi 186510147  364 ITYTVLIQGYCLVGRPDVAQEVFNQMSSR 392
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEK 29
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 63-235 1.84e-03

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 41.02  E-value: 1.84e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186510147   63 QFNDALDLFTRMVHSRPLPSIIDFTRLLSVIAKMNRYDVVISLFEQMQILGIPPllctcNIVMhCVCLSS---QPCRASC 139
Cdd:PLN03218  734 QLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKP-----NLVM-CRCITGlclRRFEKAC 807

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186510147  140 FLGkmmklgfEPdLVTFTS----LLNGYCHWnriedAIALFDQILGMGFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMG 215
Cdd:PLN03218  808 ALG-------EP-VVSFDSgrpqIENKWTSW-----ALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLG 874

                         170       180
                  ....*....|....*....|
gi 186510147  216 TNGSRPNVVTYNALVTGLCE 235
Cdd:PLN03218  875 ISADSQKQSNLSTLVDGFGE 894
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 259-289 1.96e-03

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 35.90  E-value: 1.96e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 186510147  259 ITFTALIDAFVKVGKLMEAKELYNVMIQMSV 289
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 364-398 4.36e-03

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 34.74  E-value: 4.36e-03
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 186510147  364 ITYTVLIQGYCLVGRPDVAQEVFNQMSSRRAPPDI 398
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 224-254 6.13e-03

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 34.36  E-value: 6.13e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 186510147  224 VTYNALVTGLCEIGRWGDAAWLLRDMMKRRI 254
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 104-163 8.62e-03

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 35.03  E-value: 8.62e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 186510147  104 SLFEQMQILGIPPLLCTCNIVMHCVCLSSQPCRASCFLGKMMKLGFEPDLVTFTSLLNGY 163
Cdd:pfam13812   1 SILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVI 60
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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