NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|15232470|ref|NP_188121|]
View 

TCP family transcription factor 4 [Arabidopsis thaliana]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
TCP super family cl47831
TCP family transcription factor; This is a family of TCP plant transcription factors. TCP ...
 43-104 1.30e-33

TCP family transcription factor; This is a family of TCP plant transcription factors. TCP proteins were named after the first characterized members (TB1, CYC and PCFs) and they are involved in multiple developmental control pathways. This region contains a DNA binding basic-Helix-Loop-Helix (bHLP) structure.


The actual alignment was detected with superfamily member pfam03634:

Pssm-ID: 460998  Cd Length: 152  Bit Score: 123.23  E-value: 1.30e-33
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15232470    43 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGFDRPSKAVDWLIKKAKTSIDELA 104
Cdd:pfam03634   1 TSKKDRHSKICTAGGLRDRRVRLSLECARKFFDLQDMLGFDKASKTIEWLLQQAKPAIKELT 62
 
Name Accession Description Interval E-value
TCP pfam03634
TCP family transcription factor; This is a family of TCP plant transcription factors. TCP ...
 43-104 1.30e-33

TCP family transcription factor; This is a family of TCP plant transcription factors. TCP proteins were named after the first characterized members (TB1, CYC and PCFs) and they are involved in multiple developmental control pathways. This region contains a DNA binding basic-Helix-Loop-Helix (bHLP) structure.


Pssm-ID: 460998  Cd Length: 152  Bit Score: 123.23  E-value: 1.30e-33
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15232470    43 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGFDRPSKAVDWLIKKAKTSIDELA 104
Cdd:pfam03634   1 TSKKDRHSKICTAGGLRDRRVRLSLECARKFFDLQDMLGFDKASKTIEWLLQQAKPAIKELT 62
TCP2 PLN03106
Protein TCP2; Provisional
 39-106 1.91e-24

Protein TCP2; Provisional


Pssm-ID: 215579 [Multi-domain]  Cd Length: 447  Bit Score: 104.77  E-value: 1.91e-24
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15232470   39 IVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGFDRPSKAVDWLIKKAKTSIDELAEL 106
Cdd:PLN03106  68 VSRASGGKDRHSKVLTSKGLRDRRVRLSVSTAIQFYDLQDRLGYDQPSKAVEWLIKAAEDSISELPSL 135
 
Name Accession Description Interval E-value
TCP pfam03634
TCP family transcription factor; This is a family of TCP plant transcription factors. TCP ...
 43-104 1.30e-33

TCP family transcription factor; This is a family of TCP plant transcription factors. TCP proteins were named after the first characterized members (TB1, CYC and PCFs) and they are involved in multiple developmental control pathways. This region contains a DNA binding basic-Helix-Loop-Helix (bHLP) structure.


Pssm-ID: 460998  Cd Length: 152  Bit Score: 123.23  E-value: 1.30e-33
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15232470    43 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGFDRPSKAVDWLIKKAKTSIDELA 104
Cdd:pfam03634   1 TSKKDRHSKICTAGGLRDRRVRLSLECARKFFDLQDMLGFDKASKTIEWLLQQAKPAIKELT 62
TCP2 PLN03106
Protein TCP2; Provisional
 39-106 1.91e-24

Protein TCP2; Provisional


Pssm-ID: 215579 [Multi-domain]  Cd Length: 447  Bit Score: 104.77  E-value: 1.91e-24
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15232470   39 IVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGFDRPSKAVDWLIKKAKTSIDELAEL 106
Cdd:PLN03106  68 VSRASGGKDRHSKVLTSKGLRDRRVRLSVSTAIQFYDLQDRLGYDQPSKAVEWLIKAAEDSISELPSL 135
TCP24 PLN03105
transcription factor TCP24 (TEOSINTE BRANCHED1, CYCLOIDEA, AND PCF FAMILY 24); Provisional
 39-103 2.09e-21

transcription factor TCP24 (TEOSINTE BRANCHED1, CYCLOIDEA, AND PCF FAMILY 24); Provisional


Pssm-ID: 178652  Cd Length: 324  Bit Score: 94.16  E-value: 2.09e-21
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 15232470   39 IVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGFDRPSKAVDWLIKKAKTSIDEL 103
Cdd:PLN03105  44 VSRASGGKDRHSKVLTSKGLRDRRIRLSVATAIQFYDLQDRLGFDQPSKAVEWLINAASDSITDL 108
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH