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Conserved domains on  [gi|334185290|ref|NP_187861|]
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XH/XS domain-containing protein [Arabidopsis thaliana]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
XH pfam03469
XH domain; The XH (rice gene X Homology) domain is found in a family of plant proteins ...
 504-634 5.63e-65

XH domain; The XH (rice gene X Homology) domain is found in a family of plant proteins including gene X. The molecular function of these proteins is unknown. However these proteins usually contain an XS domain that is also found in the PTGS protein SGS3. This domain contains a conserved glutamate residue that may be functionally important.


:

Pssm-ID: 460934 [Multi-domain]  Cd Length: 131  Bit Score: 209.75  E-value: 5.63e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185290  504 KRMGELDTKPFMKAMRIKYCQEDLEDWAVEVIQLWEEYLKDPDWHPFKRIKLETAETivEVIDEDDEKLRTLKNELGDDA 583
Cdd:pfam03469   1 KRMGELDEKPFLNACKQKFSNEEAEVKAAELCSLWEEELKDPEWHPFKVVMVDGKHK--EVIDEDDEKLKELKEEYGEEV 78

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 334185290  584 YQAVANALLEINEYNPSGRYISSELWNFREDRKATLEEGVNSLLEQWNQAK 634
Cdd:pfam03469  79 YNAVTTALLELNEYNPSGRYPVPELWNFKEGRKATLKEGVDYILKQWKALK 129
RRM_like_XS cd12266
RNA recognition motif (RRM)-like XS domain found in plants; This XS (named after rice gene X ...
 120-227 4.00e-46

RNA recognition motif (RRM)-like XS domain found in plants; This XS (named after rice gene X and SGS3) domain is a single-stranded RNA-binding domain (RBD) and possesses a unique version of a RNA recognition motif (RRM) fold. It is conserved in a family of plant proteins including gene X and SGS3. Although its function is still unknown, the plant SGS3 proteins are thought to be involved in post-transcriptional gene silencing (PTGS) pathways. In addition, they contain a conserved aspartate residue that may be functionally important.


:

Pssm-ID: 409710  Cd Length: 107  Bit Score: 158.67  E-value: 4.00e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185290 120 LVWPWKGVLVNIPTTsTEDGRSCTGESGPKLKDELIRrgFNPIRVRTVWDRFGHSGTGIVEFNRDWNGLQDALVFKKAYE 199
Cdd:cd12266    1 IVWPWMGIVVNTPTT-KDDNRKMEGGSNKELLERLIK--FGPTRVKPLWNPQGHTGTAIVKFNSDWNGFRNALRFEKAFE 77

                         90       100       110
                 ....*....|....*....|....*....|
gi 334185290 200 GDGHGKKDW--LCGATDSSLYAWLANADDY 227
Cdd:cd12266   78 VDGHGKKDWrnKKGGRKSKLYGWLARADDY 107
zf-XS pfam03470
XS zinc finger domain; This domain is a putative nucleic acid binding zinc finger found in ...
 32-75 4.61e-17

XS zinc finger domain; This domain is a putative nucleic acid binding zinc finger found in proteins that also contain an XS domain.


:

Pssm-ID: 251981  Cd Length: 43  Bit Score: 74.86  E-value: 4.61e-17
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 334185290   32 CPYCPDNKKKVGLYVDILQHASGVGNSqSKKRSLTEKASHRALA 75
Cdd:pfam03470   1 CPFCPGKKKQDYKYKDLLQHASGVGAS-SNRRSAKEKASHRALA 43
Smc super family cl34174
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 250-490 7.58e-09

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


The actual alignment was detected with superfamily member COG1196:

Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 58.79  E-value: 7.58e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185290 250 AEEEARKDQKLLQRLNFMVENKQYRLKKLQIKYSQdsvkLKYETEEKEKILRAYSEDLTGRQQKStdhfnrifADHEKQK 329
Cdd:COG1196  258 LEAELAELEAELEELRLELEELELELEEAQAEEYE----LLAELARLEQDIARLEERRRELEERL--------EELEEEL 325

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185290 330 VQLESQIKELEIRKLELAKREAENETQRKIVAKELEQNAAINSYVQLSALEQQKTREKAQRLAVDHKMQKEKLHKRIAAL 409
Cdd:COG1196  326 AELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEEL 405

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185290 410 ERQLDQKQELELEVQQLKSQLSVMRLVELDSGSEIVNKVETFLRDLSETEGELAHLNQFNQDLVVQERKSNDELQEARRA 489
Cdd:COG1196  406 EEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEE 485


                 .
gi 334185290 490 L 490
Cdd:COG1196  486 L 486
 
Name Accession Description Interval E-value
XH pfam03469
XH domain; The XH (rice gene X Homology) domain is found in a family of plant proteins ...
 504-634 5.63e-65

XH domain; The XH (rice gene X Homology) domain is found in a family of plant proteins including gene X. The molecular function of these proteins is unknown. However these proteins usually contain an XS domain that is also found in the PTGS protein SGS3. This domain contains a conserved glutamate residue that may be functionally important.


Pssm-ID: 460934 [Multi-domain]  Cd Length: 131  Bit Score: 209.75  E-value: 5.63e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185290  504 KRMGELDTKPFMKAMRIKYCQEDLEDWAVEVIQLWEEYLKDPDWHPFKRIKLETAETivEVIDEDDEKLRTLKNELGDDA 583
Cdd:pfam03469   1 KRMGELDEKPFLNACKQKFSNEEAEVKAAELCSLWEEELKDPEWHPFKVVMVDGKHK--EVIDEDDEKLKELKEEYGEEV 78

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 334185290  584 YQAVANALLEINEYNPSGRYISSELWNFREDRKATLEEGVNSLLEQWNQAK 634
Cdd:pfam03469  79 YNAVTTALLELNEYNPSGRYPVPELWNFKEGRKATLKEGVDYILKQWKALK 129
RRM_like_XS cd12266
RNA recognition motif (RRM)-like XS domain found in plants; This XS (named after rice gene X ...
 120-227 4.00e-46

RNA recognition motif (RRM)-like XS domain found in plants; This XS (named after rice gene X and SGS3) domain is a single-stranded RNA-binding domain (RBD) and possesses a unique version of a RNA recognition motif (RRM) fold. It is conserved in a family of plant proteins including gene X and SGS3. Although its function is still unknown, the plant SGS3 proteins are thought to be involved in post-transcriptional gene silencing (PTGS) pathways. In addition, they contain a conserved aspartate residue that may be functionally important.


Pssm-ID: 409710  Cd Length: 107  Bit Score: 158.67  E-value: 4.00e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185290 120 LVWPWKGVLVNIPTTsTEDGRSCTGESGPKLKDELIRrgFNPIRVRTVWDRFGHSGTGIVEFNRDWNGLQDALVFKKAYE 199
Cdd:cd12266    1 IVWPWMGIVVNTPTT-KDDNRKMEGGSNKELLERLIK--FGPTRVKPLWNPQGHTGTAIVKFNSDWNGFRNALRFEKAFE 77

                         90       100       110
                 ....*....|....*....|....*....|
gi 334185290 200 GDGHGKKDW--LCGATDSSLYAWLANADDY 227
Cdd:cd12266   78 VDGHGKKDWrnKKGGRKSKLYGWLARADDY 107
XS pfam03468
XS domain; The XS (rice gene X and SGS3) domain is found in a family of plant proteins ...
 118-228 1.02e-44

XS domain; The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X and SGS3. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain has recently been predicted to possess an RRM-like RNA-binding domain by fold recognition.


Pssm-ID: 460933  Cd Length: 113  Bit Score: 155.02  E-value: 1.02e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185290  118 EKLVWPWKGVLVNIPTTSTEDGRsCTGESGPKLKDELIRrgFNPIRVRTVWDRFGHSGTGIVEFNRDWNGLQDALVFKKA 197
Cdd:pfam03468   2 ELFVWPWMGIVVNIPTEQDEDGR-WVGMSGEELKDKLSR--FNPLKVKPLYGPQGHTGIAIVEFNKDWSGFKNAERFEKH 78

                          90       100       110
                  ....*....|....*....|....*....|....
gi 334185290  198 YEGDGHGKKDWL---CGATDSSLYAWLANADDYY 228
Cdd:pfam03468  79 FEAQGHGKKDWGgkrNRGSGSKLYGWVARADDYN 112
zf-XS pfam03470
XS zinc finger domain; This domain is a putative nucleic acid binding zinc finger found in ...
 32-75 4.61e-17

XS zinc finger domain; This domain is a putative nucleic acid binding zinc finger found in proteins that also contain an XS domain.


Pssm-ID: 251981  Cd Length: 43  Bit Score: 74.86  E-value: 4.61e-17
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 334185290   32 CPYCPDNKKKVGLYVDILQHASGVGNSqSKKRSLTEKASHRALA 75
Cdd:pfam03470   1 CPFCPGKKKQDYKYKDLLQHASGVGAS-SNRRSAKEKASHRALA 43
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 250-490 7.58e-09

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 58.79  E-value: 7.58e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185290 250 AEEEARKDQKLLQRLNFMVENKQYRLKKLQIKYSQdsvkLKYETEEKEKILRAYSEDLTGRQQKStdhfnrifADHEKQK 329
Cdd:COG1196  258 LEAELAELEAELEELRLELEELELELEEAQAEEYE----LLAELARLEQDIARLEERRRELEERL--------EELEEEL 325

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185290 330 VQLESQIKELEIRKLELAKREAENETQRKIVAKELEQNAAINSYVQLSALEQQKTREKAQRLAVDHKMQKEKLHKRIAAL 409
Cdd:COG1196  326 AELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEEL 405

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185290 410 ERQLDQKQELELEVQQLKSQLSVMRLVELDSGSEIVNKVETFLRDLSETEGELAHLNQFNQDLVVQERKSNDELQEARRA 489
Cdd:COG1196  406 EEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEE 485


                 .
gi 334185290 490 L 490
Cdd:COG1196  486 L 486
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 268-467 1.61e-05

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 48.13  E-value: 1.61e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185290   268 VENKQYRLKKLQIKYSQDSVKLKYETEEKEKILRAYSEDLTGRQQKSTDHFNRIfADHEKQKVQLESQIKEL-------- 339
Cdd:TIGR02168  780 AEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRI-AATERRLEDLEEQIEELsediesla 858

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185290   340 -EIRKLELAKREAENETQR--KIVAKELEQNAAINSYVQLSALEQQKTREKAQRLavdhKMQKEKLHKRIAALERQLdqk 416
Cdd:TIGR02168  859 aEIEELEELIEELESELEAllNERASLEEALALLRSELEELSEELRELESKRSEL----RRELEELREKLAQLELRL--- 931

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|.
gi 334185290   417 QELELEVQQLKSQLSVMRLVELDsgsEIVNKVETFLRDLSETEGELAHLNQ 467
Cdd:TIGR02168  932 EGLEVRIDNLQERLSEEYSLTLE---EAEALENKIEDDEEEARRRLKRLEN 979
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
 233-529 9.68e-05

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 45.50  E-value: 9.68e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185290  233 LGENLRKMGDLKSIyRFAEEEARKDQKLLQRLNFMVENKQYRLKKLQIKYSQ-DSVKLKYETEEKEKIL---RAYSEDLT 308
Cdd:pfam17380 245 LAEDVTTMTPEYTV-RYNGQTMTENEFLNQLLHIVQHQKAVSERQQQEKFEKmEQERLRQEKEEKAREVerrRKLEEAEK 323

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185290  309 GRQqKSTDHFNRIFADHEKQKVQLEsqiKELEIRKLELAKREAENETQRKIvakeleqnaainsyvqlsALEQQKTREkA 388
Cdd:pfam17380 324 ARQ-AEMDRQAAIYAEQERMAMERE---RELERIRQEERKRELERIRQEEI------------------AMEISRMRE-L 380

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185290  389 QRLAVDHKMQKEKLHKRIAALERQLDQKQELELEVQQLKSQLSVMRLVELDSGSEIVNKVET----FLRDLSETEGELAH 464
Cdd:pfam17380 381 ERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEerarEMERVRLEEQERQQ 460

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 334185290  465 -LNQFNQDLVVQERKSNDELQEAR-RALISNLRDMGLHigvKRMGELDTKPFMKAMRIKYCQEDLED 529
Cdd:pfam17380 461 qVERLRQQEEERKRKKLELEKEKRdRKRAEEQRRKILE---KELEERKQAMIEEERKRKLLEKEMEE 524
mukB PRK04863
chromosome partition protein MukB;
252-436 7.80e-04

chromosome partition protein MukB;


Pssm-ID: 235316 [Multi-domain]  Cd Length: 1486  Bit Score: 42.64  E-value: 7.80e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185290  252 EEARKDQKLLQ------------RLNFMVENKQYRLkklqIKYSQDSVKLKYETEEKEKILRAYSEDLTGRQQKSTDhFN 319
Cdd:PRK04863  945 QQAQQTQRDAKqqafaltevvqrRAHFSYEDAAEML----AKNSDLNEKLRQRLEQAEQERTRAREQLRQAQAQLAQ-YN 1019

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185290  320 RIFADHEKQKVQLESQIKELEIRKLELAKREAENETQRKIVAKELEQNAAINSYVQLSALEQQKTREKAQRlavdhkmqk 399
Cdd:PRK04863 1020 QVLASLKSSYDAKRQMLQELKQELQDLGVPADSGAEERARARRDELHARLSANRSRRNQLEKQLTFCEAEM--------- 1090

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 334185290  400 EKLHKRIAALERqlDQKQELELEVQQLKSQLSVMRLV 436
Cdd:PRK04863 1091 DNLTKKLRKLER--DYHEMREQVVNAKAGWCAVLRLV 1125
 
Name Accession Description Interval E-value
XH pfam03469
XH domain; The XH (rice gene X Homology) domain is found in a family of plant proteins ...
 504-634 5.63e-65

XH domain; The XH (rice gene X Homology) domain is found in a family of plant proteins including gene X. The molecular function of these proteins is unknown. However these proteins usually contain an XS domain that is also found in the PTGS protein SGS3. This domain contains a conserved glutamate residue that may be functionally important.


Pssm-ID: 460934 [Multi-domain]  Cd Length: 131  Bit Score: 209.75  E-value: 5.63e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185290  504 KRMGELDTKPFMKAMRIKYCQEDLEDWAVEVIQLWEEYLKDPDWHPFKRIKLETAETivEVIDEDDEKLRTLKNELGDDA 583
Cdd:pfam03469   1 KRMGELDEKPFLNACKQKFSNEEAEVKAAELCSLWEEELKDPEWHPFKVVMVDGKHK--EVIDEDDEKLKELKEEYGEEV 78

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 334185290  584 YQAVANALLEINEYNPSGRYISSELWNFREDRKATLEEGVNSLLEQWNQAK 634
Cdd:pfam03469  79 YNAVTTALLELNEYNPSGRYPVPELWNFKEGRKATLKEGVDYILKQWKALK 129
RRM_like_XS cd12266
RNA recognition motif (RRM)-like XS domain found in plants; This XS (named after rice gene X ...
 120-227 4.00e-46

RNA recognition motif (RRM)-like XS domain found in plants; This XS (named after rice gene X and SGS3) domain is a single-stranded RNA-binding domain (RBD) and possesses a unique version of a RNA recognition motif (RRM) fold. It is conserved in a family of plant proteins including gene X and SGS3. Although its function is still unknown, the plant SGS3 proteins are thought to be involved in post-transcriptional gene silencing (PTGS) pathways. In addition, they contain a conserved aspartate residue that may be functionally important.


Pssm-ID: 409710  Cd Length: 107  Bit Score: 158.67  E-value: 4.00e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185290 120 LVWPWKGVLVNIPTTsTEDGRSCTGESGPKLKDELIRrgFNPIRVRTVWDRFGHSGTGIVEFNRDWNGLQDALVFKKAYE 199
Cdd:cd12266    1 IVWPWMGIVVNTPTT-KDDNRKMEGGSNKELLERLIK--FGPTRVKPLWNPQGHTGTAIVKFNSDWNGFRNALRFEKAFE 77

                         90       100       110
                 ....*....|....*....|....*....|
gi 334185290 200 GDGHGKKDW--LCGATDSSLYAWLANADDY 227
Cdd:cd12266   78 VDGHGKKDWrnKKGGRKSKLYGWLARADDY 107
XS pfam03468
XS domain; The XS (rice gene X and SGS3) domain is found in a family of plant proteins ...
 118-228 1.02e-44

XS domain; The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X and SGS3. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain has recently been predicted to possess an RRM-like RNA-binding domain by fold recognition.


Pssm-ID: 460933  Cd Length: 113  Bit Score: 155.02  E-value: 1.02e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185290  118 EKLVWPWKGVLVNIPTTSTEDGRsCTGESGPKLKDELIRrgFNPIRVRTVWDRFGHSGTGIVEFNRDWNGLQDALVFKKA 197
Cdd:pfam03468   2 ELFVWPWMGIVVNIPTEQDEDGR-WVGMSGEELKDKLSR--FNPLKVKPLYGPQGHTGIAIVEFNKDWSGFKNAERFEKH 78

                          90       100       110
                  ....*....|....*....|....*....|....
gi 334185290  198 YEGDGHGKKDWL---CGATDSSLYAWLANADDYY 228
Cdd:pfam03468  79 FEAQGHGKKDWGgkrNRGSGSKLYGWVARADDYN 112
zf-XS pfam03470
XS zinc finger domain; This domain is a putative nucleic acid binding zinc finger found in ...
 32-75 4.61e-17

XS zinc finger domain; This domain is a putative nucleic acid binding zinc finger found in proteins that also contain an XS domain.


Pssm-ID: 251981  Cd Length: 43  Bit Score: 74.86  E-value: 4.61e-17
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 334185290   32 CPYCPDNKKKVGLYVDILQHASGVGNSqSKKRSLTEKASHRALA 75
Cdd:pfam03470   1 CPFCPGKKKQDYKYKDLLQHASGVGAS-SNRRSAKEKASHRALA 43
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 250-490 7.58e-09

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 58.79  E-value: 7.58e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185290 250 AEEEARKDQKLLQRLNFMVENKQYRLKKLQIKYSQdsvkLKYETEEKEKILRAYSEDLTGRQQKStdhfnrifADHEKQK 329
Cdd:COG1196  258 LEAELAELEAELEELRLELEELELELEEAQAEEYE----LLAELARLEQDIARLEERRRELEERL--------EELEEEL 325

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185290 330 VQLESQIKELEIRKLELAKREAENETQRKIVAKELEQNAAINSYVQLSALEQQKTREKAQRLAVDHKMQKEKLHKRIAAL 409
Cdd:COG1196  326 AELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEEL 405

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185290 410 ERQLDQKQELELEVQQLKSQLSVMRLVELDSGSEIVNKVETFLRDLSETEGELAHLNQFNQDLVVQERKSNDELQEARRA 489
Cdd:COG1196  406 EEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEE 485


                 .
gi 334185290 490 L 490
Cdd:COG1196  486 L 486
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 247-496 8.33e-09

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 58.79  E-value: 8.33e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185290 247 YRFAEEEARKDQKLLQRLNFMVENKQYRLKKLQIKYSQDSVKLKYETEEKEKILRAYSEDLT--GRQQKSTDHFNRIFAD 324
Cdd:COG1196  234 LRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAelARLEQDIARLEERRRE 313

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185290 325 HEKQKVQLESQIKELEIRKLELAKREAENETQRKIVAKELEQNAAINSYVQLSALEQQKTREKAQRLAVDHKMQKEKLHK 404
Cdd:COG1196  314 LEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALR 393

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185290 405 RIAALERQLDQKQELELEVQQLKSQLSVMRLVELDSGSEIVNKVETFLRDLSETEGELAHLNQFNQDLVVQERKSNDELQ 484
Cdd:COG1196  394 AAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAA 473

                        250
                 ....*....|..
gi 334185290 485 EARRALISNLRD 496
Cdd:COG1196  474 LLEAALAELLEE 485
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 328-495 6.54e-06

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 49.55  E-value: 6.54e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185290 328 QKVQLESQIKELEIRKLELAKREAE-NETQRKIVAKELEQNAAINSYVQLSA-LEQQKTREKAQRLAVDHKMQKE-KLHK 404
Cdd:COG1196  216 RELKEELKELEAELLLLKLRELEAElEELEAELEELEAELEELEAELAELEAeLEELRLELEELELELEEAQAEEyELLA 295

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185290 405 RIAALERQLD----QKQELELEVQQLKSQLSVMRLVELDSGSEIVNKVETFLRDLSETEGELAHLNQFNQDLVVQERKSN 480
Cdd:COG1196  296 ELARLEQDIArleeRRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELA 375

                        170
                 ....*....|....*
gi 334185290 481 DELQEARRALISNLR 495
Cdd:COG1196  376 EAEEELEELAEELLE 390
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 268-467 1.61e-05

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 48.13  E-value: 1.61e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185290   268 VENKQYRLKKLQIKYSQDSVKLKYETEEKEKILRAYSEDLTGRQQKSTDHFNRIfADHEKQKVQLESQIKEL-------- 339
Cdd:TIGR02168  780 AEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRI-AATERRLEDLEEQIEELsediesla 858

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185290   340 -EIRKLELAKREAENETQR--KIVAKELEQNAAINSYVQLSALEQQKTREKAQRLavdhKMQKEKLHKRIAALERQLdqk 416
Cdd:TIGR02168  859 aEIEELEELIEELESELEAllNERASLEEALALLRSELEELSEELRELESKRSEL----RRELEELREKLAQLELRL--- 931

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|.
gi 334185290   417 QELELEVQQLKSQLSVMRLVELDsgsEIVNKVETFLRDLSETEGELAHLNQ 467
Cdd:TIGR02168  932 EGLEVRIDNLQERLSEEYSLTLE---EAEALENKIEDDEEEARRRLKRLEN 979
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
324-496 1.97e-05

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 47.99  E-value: 1.97e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185290  324 DHEKQKVQLESQIKELEIRKLELAKREAENETQRKIVAKELEQNAAINSYV-----------QLSALEQQKTREKAQRLA 392
Cdd:COG4913   607 DNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSwdeidvasaerEIAELEAELERLDASSDD 686

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185290  393 VDH-KMQKEKLHKRIAALERQLDQKQ----ELELEVQQLKSQLSVMRLVELDSGSEIVNKVETFLRDLSETEGELAHLNQ 467
Cdd:COG4913   687 LAAlEEQLEELEAELEELEEELDELKgeigRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERE 766

                         170       180
                  ....*....|....*....|....*....
gi 334185290  468 FNQDLVVQERKSNDELQEARRALISNLRD 496
Cdd:COG4913   767 LRENLEERIDALRARLNRAEEELERAMRA 795
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 323-498 3.25e-05

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 47.36  E-value: 3.25e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185290   323 ADHEKQKVQLESQIKELEIRKLELAKREAENETQRKIVAKELEQ-----NAAINSYVQLSALEQQKTREKAQ------RL 391
Cdd:TIGR02168  680 EELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEElsrqiSALRKDLARLEAEVEQLEERIAQlskeltEL 759

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185290   392 AVDHKMQKEKLHKRIAALERQLDQKQELELEVQQLKSQLSVMRLvELDSGSEIVNKVETFLRDLSETEGELAHLNQFNQD 471
Cdd:TIGR02168  760 EAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALRE-ALDELRAELTLLNEEAANLRERLESLERRIAATER 838

                          170       180
                   ....*....|....*....|....*..
gi 334185290   472 LVVQERKSNDELQEARRALISNLRDMG 498
Cdd:TIGR02168  839 RLEDLEEQIEELSEDIESLAAEIEELE 865
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 261-579 3.88e-05

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 46.97  E-value: 3.88e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185290   261 LQRLNFMVE--NKQYRLKKLQIKYSQDSVKLKYETEEKEKILraysedltgrqqkSTDHFNrifaDHEKQKVQLESQIKE 338
Cdd:TIGR02168  188 LDRLEDILNelERQLKSLERQAEKAERYKELKAELRELELAL-------------LVLRLE----ELREELEELQEELKE 250

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185290   339 LEIRKLELAKREAENETQrkivakeLEQNAAINSYVQLSALEQQKTREKAQRLAVDHKMQKEKLHKRIAALERQLdqkQE 418
Cdd:TIGR02168  251 AEEELEELTAELQELEEK-------LEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQL---EE 320

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185290   419 LELEVQQLKSQlsvmRLVELDSGSEIVNKVETFLRDLSETEGELAHLNQFNQDLVVQERKSNDELQEARRALISNLRDMG 498
Cdd:TIGR02168  321 LEAQLEELESK----LDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIA 396

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185290   499 LHigVKRMGELDTKpfmkamrikycQEDLEDWAVEVIQLWEEYLKDPDWHPFKRIKLETAETIvEVIDEDDEKLRTLKNE 578
Cdd:TIGR02168  397 SL--NNEIERLEAR-----------LERLEDRRERLQQEIEELLKKLEEAELKELQAELEELE-EELEELQEELERLEEA 462


                   .
gi 334185290   579 L 579
Cdd:TIGR02168  463 L 463
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
288-455 6.30e-05

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 46.16  E-value: 6.30e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185290 288 KLKYETEEKEKILRAYsedltgRQQkstdhfNRIFaDHEKQKVQLESQIKELEIRKLELAKREAENETQRKIVAKELEQN 367
Cdd:COG3206  186 ELRKELEEAEAALEEF------RQK------NGLV-DLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSG 252

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185290 368 AAINSYV-----------QLSALEQQKTrEKAQRLAVDH-KMQkeKLHKRIAALERQLDQ-----KQELELEVQQLKSQL 430
Cdd:COG3206  253 PDALPELlqspviqqlraQLAELEAELA-ELSARYTPNHpDVI--ALRAQIAALRAQLQQeaqriLASLEAELEALQARE 329

                        170       180
                 ....*....|....*....|....*..
gi 334185290 431 SVMR--LVELDSGSEIVNKVETFLRDL 455
Cdd:COG3206  330 ASLQaqLAQLEARLAELPELEAELRRL 356
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
 233-529 9.68e-05

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 45.50  E-value: 9.68e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185290  233 LGENLRKMGDLKSIyRFAEEEARKDQKLLQRLNFMVENKQYRLKKLQIKYSQ-DSVKLKYETEEKEKIL---RAYSEDLT 308
Cdd:pfam17380 245 LAEDVTTMTPEYTV-RYNGQTMTENEFLNQLLHIVQHQKAVSERQQQEKFEKmEQERLRQEKEEKAREVerrRKLEEAEK 323

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185290  309 GRQqKSTDHFNRIFADHEKQKVQLEsqiKELEIRKLELAKREAENETQRKIvakeleqnaainsyvqlsALEQQKTREkA 388
Cdd:pfam17380 324 ARQ-AEMDRQAAIYAEQERMAMERE---RELERIRQEERKRELERIRQEEI------------------AMEISRMRE-L 380

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185290  389 QRLAVDHKMQKEKLHKRIAALERQLDQKQELELEVQQLKSQLSVMRLVELDSGSEIVNKVET----FLRDLSETEGELAH 464
Cdd:pfam17380 381 ERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEerarEMERVRLEEQERQQ 460

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 334185290  465 -LNQFNQDLVVQERKSNDELQEAR-RALISNLRDMGLHigvKRMGELDTKPFMKAMRIKYCQEDLED 529
Cdd:pfam17380 461 qVERLRQQEEERKRKKLELEKEKRdRKRAEEQRRKILE---KELEERKQAMIEEERKRKLLEKEMEE 524
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 269-490 1.13e-04

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 44.75  E-value: 1.13e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185290 269 ENKQYRLKKLQIKYSQDSVKLKYETEEKEKILRAYSEdltgrQQKSTDHFNRIFADHEKQKVQLESQIKELEIRKLELAK 348
Cdd:COG4942   23 AEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAA-----LERRIAALARRIRALEQELAALEAELAELEKEIAELRA 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185290 349 REAEnetQRKIVAKELEQNAAINSYVQLSALEQQKTREKAQRLAVDHKMQKEKLHKRIAALERQLDQKQELELEVQQLKS 428
Cdd:COG4942   98 ELEA---QKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERA 174

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 334185290 429 QLSVMRLVELDSGSEIVNKVETFLRDLSETEGELAHLNQFNQDLVVQERKSNDELQEARRAL 490
Cdd:COG4942  175 ELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEA 236
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
297-490 6.36e-04

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 42.83  E-value: 6.36e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185290 297 EKILRAYSEDLTGRQQKSTDHFNRIFADHEKQKVQLESQIKELEIRKLELAKREAENETQRKIVAKELEQNAAINSYVQL 376
Cdd:COG4717   48 LERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQL 127

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185290 377 SALEQQKTREKAQRLAVDHKMqkEKLHKRIAALERQLDQKQELELEVQQLKSQLsvmRLVELDSGSEIVNKVETFLRDLS 456
Cdd:COG4717  128 LPLYQELEALEAELAELPERL--EELEERLEELRELEEELEELEAELAELQEEL---EELLEQLSLATEEELQDLAEELE 202

                        170       180       190
                 ....*....|....*....|....*....|....
gi 334185290 457 ETEGELAHLNQfnqdlvvQERKSNDELQEARRAL 490
Cdd:COG4717  203 ELQQRLAELEE-------ELEEAQEELEELEEEL 229
mukB PRK04863
chromosome partition protein MukB;
252-436 7.80e-04

chromosome partition protein MukB;


Pssm-ID: 235316 [Multi-domain]  Cd Length: 1486  Bit Score: 42.64  E-value: 7.80e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185290  252 EEARKDQKLLQ------------RLNFMVENKQYRLkklqIKYSQDSVKLKYETEEKEKILRAYSEDLTGRQQKSTDhFN 319
Cdd:PRK04863  945 QQAQQTQRDAKqqafaltevvqrRAHFSYEDAAEML----AKNSDLNEKLRQRLEQAEQERTRAREQLRQAQAQLAQ-YN 1019

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185290  320 RIFADHEKQKVQLESQIKELEIRKLELAKREAENETQRKIVAKELEQNAAINSYVQLSALEQQKTREKAQRlavdhkmqk 399
Cdd:PRK04863 1020 QVLASLKSSYDAKRQMLQELKQELQDLGVPADSGAEERARARRDELHARLSANRSRRNQLEKQLTFCEAEM--------- 1090

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 334185290  400 EKLHKRIAALERqlDQKQELELEVQQLKSQLSVMRLV 436
Cdd:PRK04863 1091 DNLTKKLRKLER--DYHEMREQVVNAKAGWCAVLRLV 1125
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
 235-425 8.91e-04

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 42.42  E-value: 8.91e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185290  235 ENLRKMGDLKSIYRFAEEEARKDQKLLQRLNFMVENKQYRLKKLQIKYSQDSVKLKYETEEKEKILRAYSEDLTgRQQKS 314
Cdd:pfam17380 392 ERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEERAREMERVRLEEQERQQQVERL-RQQEE 470

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185290  315 TDHFNRIFADHEKQKVQLESQIKELEIRKLELAKREA--ENETQRKIVAKELE--QNAAINSYVQLSALEQQKT-REKAQ 389
Cdd:pfam17380 471 ERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQAmiEEERKRKLLEKEMEerQKAIYEEERRREAEEERRKqQEMEE 550

                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 334185290  390 RLAVDHKMQKEKLHK-RIAALERQLDQ-KQELELEVQQ 425
Cdd:pfam17380 551 RRRIQEQMRKATEERsRLEAMEREREMmRQIVESEKAR 588
PRK10929 PRK10929
putative mechanosensitive channel protein; Provisional
 250-496 1.29e-03

putative mechanosensitive channel protein; Provisional


Pssm-ID: 236798 [Multi-domain]  Cd Length: 1109  Bit Score: 41.96  E-value: 1.29e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185290  250 AEEEARKDQKLLQrlNFMVENKQYRLKKLQIKYSQDSVKLKYETEEKE-KILRAYSE--DLTGRQQKSTDHFNRIfADHE 326
Cdd:PRK10929   63 SLERAKQYQQVID--NFPKLSAELRQQLNNERDEPRSVPPNMSTDALEqEILQVSSQllEKSRQAQQEQDRAREI-SDSL 139

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185290  327 KQKVQLESQIK----ELEIR------------KLELAKREAENeTQRKIVAKELEqnaainsYVQLSAleqqKTREKAQR 390
Cdd:PRK10929  140 SQLPQQQTEARrqlnEIERRlqtlgtpntplaQAQLTALQAES-AALKALVDELE-------LAQLSA----NNRQELAR 207

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185290  391 LAVDhkmqkekLHKRiaalerqldQKQELELEVQQLKSQLSVMRLVELDSGSEIVNKVE-------TFLRDLSETEGEL- 462
Cdd:PRK10929  208 LRSE-------LAKK---------RSQQLDAYLQALRNQLNSQRQREAERALESTELLAeqsgdlpKSIVAQFKINRELs 271

                         250       260       270
                  ....*....|....*....|....*....|....*..
gi 334185290  463 AHLNQFNQ--DLVV-QERKSNDELQEARRALiSNLRD 496
Cdd:PRK10929  272 QALNQQAQrmDLIAsQQRQAASQTLQVRQAL-NTLRE 307
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
 229-488 1.50e-03

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 41.65  E-value: 1.50e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185290  229 RANILGENLR-KMGDLKSIYRFAEEEARKDQKLLQRLNFMVENKQYR-LKKLQIKYSQDSVKLKYETE--EKEKILRAYs 304
Cdd:pfam17380 332 QAAIYAEQERmAMERERELERIRQEERKRELERIRQEEIAMEISRMReLERLQMERQQKNERVRQELEaaRKVKILEEE- 410

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185290  305 edltgRQQKSTDHFNrifadhEKQKVQLESQ-IKELEIRKLElAKREAENETQRKivaKELEQNAainsyvQLSALEQQK 383
Cdd:pfam17380 411 -----RQRKIQQQKV------EMEQIRAEQEeARQREVRRLE-EERAREMERVRL---EEQERQQ------QVERLRQQE 469

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185290  384 TREKAQRLavdhKMQKEKLHKRIAALERQLDQKQELELEVQQLKSQLSVMRLVEldsgseivnkvetflRDLSETEGELA 463
Cdd:pfam17380 470 EERKRKKL----ELEKEKRDRKRAEEQRRKILEKELEERKQAMIEEERKRKLLE---------------KEMEERQKAIY 530

                         250       260
                  ....*....|....*....|....*
gi 334185290  464 HLNQfnQDLVVQERKSNDELQEARR 488
Cdd:pfam17380 531 EEER--RREAEEERRKQQEMEERRR 553
CwlO1 COG3883
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ...
 239-425 1.82e-03

Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];


Pssm-ID: 443091 [Multi-domain]  Cd Length: 379  Bit Score: 40.97  E-value: 1.82e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185290 239 KMGDLKSIYRFAEEEARKDQKLLQRLNFMVENKQYRLKKLQikysQDSVKLKYETEEKEKILRAYSEDLTGR---QQKS- 314
Cdd:COG3883   24 ELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQ----AEIDKLQAEIAEAEAEIEERREELGERaraLYRSg 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185290 315 ----------------------------TDHFNRIFADHEKQKVQLESQIKELEIRKLELAKREAENETQRKIVAKELEQ 366
Cdd:COG3883  100 gsvsyldvllgsesfsdfldrlsalskiADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQAE 179

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 334185290 367 NAAInsYVQLSALEQQKTREKAQRLAvdhkmQKEKLHKRIAALERQLDQKQELELEVQQ 425
Cdd:COG3883  180 QEAL--LAQLSAEEAAAEAQLAELEA-----ELAAAEAAAAAAAAAAAAAAAAAAAAAA 231
COG5022 COG5022
Myosin heavy chain [General function prediction only];
254-513 3.15e-03

Myosin heavy chain [General function prediction only];


Pssm-ID: 227355 [Multi-domain]  Cd Length: 1463  Bit Score: 40.83  E-value: 3.15e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185290  254 ARKDQKLLQRLnfMVENKQYRLKKLQIKYSQDsVKLK--YETEEKEKILRAYSEDLTGRQQKStdhfnrifadhEKQKVQ 331
Cdd:COG5022   767 ALKRIKKIQVI--QHGFRLRRLVDYELKWRLF-IKLQplLSLLGSRKEYRSYLACIIKLQKTI-----------KREKKL 832

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185290  332 LESQIKELEIRKLELAKREAENETQRKIVAKELEQNAAINSYVQLSALEQQKTREKAQRLAVDH-KMQKEKLHKRIAALE 410
Cdd:COG5022   833 RETEEVEFSLKAEVLIQKFGRSLKAKKRFSLLKKETIYLQSAQRVELAERQLQELKIDVKSISSlKLVNLELESEIIELK 912

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185290  411 RQLDQ--------KQELELEVQQL--KSQLSVMRLVELDSgSEIVNKVETFLRDLSETEGELAHLNQFNQDLVVQERKSN 480
Cdd:COG5022   913 KSLSSdlienlefKTELIARLKKLlnNIDLEEGPSIEYVK-LPELNKLHEVESKLKETSEEYEDLLKKSTILVREGNKAN 991

                         250       260       270
                  ....*....|....*....|....*....|....
gi 334185290  481 DELQEARRALISNLRD-MGLHIGVKRMGELDTKP 513
Cdd:COG5022   992 SELKNFKKELAELSKQyGALQESTKQLKELPVEV 1025
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
225-429 3.42e-03

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 40.67  E-value: 3.42e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185290  225 DDYYRANIL-----GENLRKM----GDLKSIYRfAEEEARKDQKLLQRLNFMVEN-KQYRLKKLQIKYSQDSVKLkYETE 294
Cdd:COG4913   210 DDFVREYMLeepdtFEAADALvehfDDLERAHE-ALEDAREQIELLEPIRELAERyAAARERLAELEYLRAALRL-WFAQ 287

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185290  295 EKEKILRAYSEDLTGRQQKSTDHFNRI---FADHEKQKVQLESQIKELEIRKLELAKRE-AENETQRKIVAKELEQN--- 367
Cdd:COG4913   288 RRLELLEAELEELRAELARLEAELERLearLDALREELDELEAQIRGNGGDRLEQLEREiERLERELEERERRRARLeal 367

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 334185290  368 -AAINSYVQLSALEQQKTREKAQRLAVDHKMQKEKLHKRIAALERQL----DQKQELELEVQQLKSQ 429
Cdd:COG4913   368 lAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALrdlrRELRELEAEIASLERR 434
PTZ00491 PTZ00491
major vault protein; Provisional
 328-449 3.52e-03

major vault protein; Provisional


Pssm-ID: 240439 [Multi-domain]  Cd Length: 850  Bit Score: 40.39  E-value: 3.52e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185290 328 QKVQLESQIK-ELEIRKLelaKREAENETQRKIVAKELEQNAAINSyvQLSALEQQKTREKAQRLAVDHKMQKEKLhkRI 406
Cdd:PTZ00491 671 QAELLEQEARgRLERQKM---HDKAKAEEQRTKLLELQAESAAVES--SGQSRAEALAEAEARLIEAEAEVEQAEL--RA 743

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 334185290 407 AALE-------RQLDQKQELELEVQQLKSQLSVMRLVELdsgSEI-VNKVE 449
Cdd:PTZ00491 744 KALRieaeaelEKLRKRQELELEYEQAQNELEIAKAKEL---ADIeATKFE 791
COG2433 COG2433
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
297-454 5.62e-03

Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];


Pssm-ID: 441980 [Multi-domain]  Cd Length: 644  Bit Score: 39.84  E-value: 5.62e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185290 297 EKILRAYSEDLTGRQQKSTDHFNRIFADHEKQKVQLESQIKELEIRKLELakrEAENETQRKIVAkELEQnaainsyvQL 376
Cdd:COG2433  383 EELIEKELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLEAEVEEL---EAELEEKDERIE-RLER--------EL 450

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185290 377 SaLEQQKTREKAQRlavDHKMQkeKLHKRIAALERQLDQKQElelEVQQLKSQLSVMR-LVELDSGSE--IVNKVETFLR 453
Cdd:COG2433  451 S-EARSEERREIRK---DREIS--RLDREIERLERELEEERE---RIEELKRKLERLKeLWKLEHSGElvPVKVVEKFTK 521


                 .
gi 334185290 454 D 454
Cdd:COG2433  522 E 522
PTZ00121 PTZ00121
MAEBL; Provisional
 230-413 6.61e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 39.74  E-value: 6.61e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185290  230 ANILGENLRKMGDLK----SIYRFAEEEARKDQKLLQrlnfmvENKQYRLKKLQIKYSQDSVKLKYETEEKEKILRAYSE 305
Cdd:PTZ00121 1618 AKIKAEELKKAEEEKkkveQLKKKEAEEKKKAEELKK------AEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAA 1691

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185290  306 DLTGRQQKSTDHFNRIFADHEKQKVQLESQIKELEIR--KLELAKREAENETQRKIVAKELEQNAaiNSYVQLSALEQQK 383
Cdd:PTZ00121 1692 EALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENkiKAEEAKKEAEEDKKKAEEAKKDEEEK--KKIAHLKKEEEKK 1769

                         170       180       190
                  ....*....|....*....|....*....|.
gi 334185290  384 TRE-KAQRLAVDHKMQKEKLHKRIAALERQL 413
Cdd:PTZ00121 1770 AEEiRKEKEAVIEEELDEEDEKRRMEVDKKI 1800
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 233-420 7.38e-03

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 38.98  E-value: 7.38e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185290 233 LGENLRKMGDLKSIYRFAEEEARKDQKLLQRLNFMVENKQYRLKKLQIKYSQDSVKLKYETEEKEKILRAYSedLTGRQ- 311
Cdd:COG4942   43 LAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAELLRALY--RLGRQp 120

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185290 312 -------QKSTDHFNRIFADHEKQKVQLESQIKELEIRKLELAKREAENETQRKIVAKELEQNAAINSYVQLSALEQQKT 384
Cdd:COG4942  121 plalllsPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKL 200

                        170       180       190
                 ....*....|....*....|....*....|....*.
gi 334185290 385 REKAQRLAVDHKMQKEKLHKRIAALERQLDQKQELE 420
Cdd:COG4942  201 LARLEKELAELAAELAELQQEAEELEALIARLEAEA 236
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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