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Conserved domains on  [gi|15228239|ref|NP_187634|]
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lycopene cyclase [Arabidopsis thaliana]

Protein Classification

lycopene cyclase family protein( domain architecture ID 10010798)

lycopene cyclase family protein similar to chloroplastic lycopene beta cyclase, capsanthin/capsorubin synthase, neoxanthin synthase

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN02463 PLN02463
lycopene beta cyclase
 55-501 0e+00

lycopene beta cyclase


:

Pssm-ID: 178082 [Multi-domain]  Cd Length: 447  Bit Score: 942.60  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228239   55 ALLDLVPETKKENLDFELPLYDTSKSQVVDLAIVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVDEFEAMD 134
Cdd:PLN02463   1 ALLELVPETKKENLDFELPRFDPSKSRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEALG 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228239  135 LLDCLDTTWSGAVVYVDEGVKKDLSRPYGRVNRKQLKSKMLQKCITNGVKFHQSKVTNVVHEEANSTVVCSDGVKIQASV 214
Cdd:PLN02463  81 LLDCLDTTWPGAVVYIDDGKKKDLDRPYGRVNRKKLKSKMLERCIANGVQFHQAKVKKVVHEESKSLVVCDDGVKIQASL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228239  215 VLDATGFSRCLVQYDKPYNPGYQVAYGIVAEVDGHPFDVDKMVFMDWRDKHLDSYPELKERNSKIPTFLYAMPFSSNRIF 294
Cdd:PLN02463 161 VLDATGFSRCLVQYDKPFNPGYQVAYGILAEVDSHPFDLDKMLFMDWRDSHLGNNPELRARNSKLPTFLYAMPFSSNRIF 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228239  295 LEETSLVARPGLRMEDIQERMAARLKHLGINVKRIEEDERCVIPMGGPLPVLPQRVVGIGGTAGMVHPSTGYMVARTLAA 374
Cdd:PLN02463 241 LEETSLVARPGLPMDDIQERMVARLRHLGIKVKSVEEDEKCVIPMGGPLPVIPQRVLGIGGTAGMVHPSTGYMVARTLAA 320

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228239  375 APIVANAIVRYLGSPSSNSLRGDQLSAEVWRDLWPIERRRQREFFCFGMDILLKLDLDATRRFFDAFFDLQPHYWHGFLS 454
Cdd:PLN02463 321 APIVADAIVEYLGSSRSNSFRGDELSAEVWNDLWPIERRRQREFFCFGMDILLKLDLDGTRRFFDAFFDLEPHYWHGFLS 400

                        410       420       430       440
                 ....*....|....*....|....*....|....*....|....*..
gi 15228239  455 SRLFLPELLVFGLSLFSHASNTSRLEIMTKGTVPLAKMINNLVQDRD 501
Cdd:PLN02463 401 SRLFLPELLLFGLSLFSHASNTSRLEIMAKGTVPLVKMINNLIQDRI 447
 
Name Accession Description Interval E-value
PLN02463 PLN02463
lycopene beta cyclase
 55-501 0e+00

lycopene beta cyclase


Pssm-ID: 178082 [Multi-domain]  Cd Length: 447  Bit Score: 942.60  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228239   55 ALLDLVPETKKENLDFELPLYDTSKSQVVDLAIVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVDEFEAMD 134
Cdd:PLN02463   1 ALLELVPETKKENLDFELPRFDPSKSRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEALG 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228239  135 LLDCLDTTWSGAVVYVDEGVKKDLSRPYGRVNRKQLKSKMLQKCITNGVKFHQSKVTNVVHEEANSTVVCSDGVKIQASV 214
Cdd:PLN02463  81 LLDCLDTTWPGAVVYIDDGKKKDLDRPYGRVNRKKLKSKMLERCIANGVQFHQAKVKKVVHEESKSLVVCDDGVKIQASL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228239  215 VLDATGFSRCLVQYDKPYNPGYQVAYGIVAEVDGHPFDVDKMVFMDWRDKHLDSYPELKERNSKIPTFLYAMPFSSNRIF 294
Cdd:PLN02463 161 VLDATGFSRCLVQYDKPFNPGYQVAYGILAEVDSHPFDLDKMLFMDWRDSHLGNNPELRARNSKLPTFLYAMPFSSNRIF 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228239  295 LEETSLVARPGLRMEDIQERMAARLKHLGINVKRIEEDERCVIPMGGPLPVLPQRVVGIGGTAGMVHPSTGYMVARTLAA 374
Cdd:PLN02463 241 LEETSLVARPGLPMDDIQERMVARLRHLGIKVKSVEEDEKCVIPMGGPLPVIPQRVLGIGGTAGMVHPSTGYMVARTLAA 320

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228239  375 APIVANAIVRYLGSPSSNSLRGDQLSAEVWRDLWPIERRRQREFFCFGMDILLKLDLDATRRFFDAFFDLQPHYWHGFLS 454
Cdd:PLN02463 321 APIVADAIVEYLGSSRSNSFRGDELSAEVWNDLWPIERRRQREFFCFGMDILLKLDLDGTRRFFDAFFDLEPHYWHGFLS 400

                        410       420       430       440
                 ....*....|....*....|....*....|....*....|....*..
gi 15228239  455 SRLFLPELLVFGLSLFSHASNTSRLEIMTKGTVPLAKMINNLVQDRD 501
Cdd:PLN02463 401 SRLFLPELLLFGLSLFSHASNTSRLEIMAKGTVPLVKMINNLIQDRI 447
carotene-cycl TIGR01790
lycopene cyclase family protein; This family includes lycopene beta and epsilion cyclases ...
 84-481 0e+00

lycopene cyclase family protein; This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.


Pssm-ID: 130850 [Multi-domain]  Cd Length: 388  Bit Score: 536.63  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228239    84 DLAIVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVYVDEGVKKDLSRPYG 163
Cdd:TIGR01790   1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTAYG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228239   164 RVNRKQLKSKMLQKCITNGVKFHQSKVTNVVHE-EANSTVVCSDGVKIQASVVLDATGFSRcLVQYDK-PYNPGYQVAYG 241
Cdd:TIGR01790  81 SVDSTRLHEELLQKCPEGGVLWLERKAIHAEADgVALSTVYCAGGQRIQARLVIDARGFGP-LVQYVRfPLNVGFQVAYG 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228239   242 IVAEVDGHPFDVDKMVFMDWRDKHLDSyPELKERNskiPTFLYAMPFSSNRIFLEETSLVARPGLRMEDIQERMAARLKH 321
Cdd:TIGR01790 160 VEARLSRPPHGPSSMVIMDARVDQLAA-PELKGYR---PTFLYAMPLGSTRVFIEETSLADRPALPRDRLRQRILARLNA 235

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228239   322 LGINVKRIEEDERCVIPMGGPLPVLPQRVVGIGGTAGMVHPSTGYMVARTLAAAPIVANAIVRYLGSPSSnslrgdqLSA 401
Cdd:TIGR01790 236 QGWQIKTIEEEEWGALPVGLPGPFLPQRVAAFGAAAGMVHPTTGYSVARALSDAPGLAAAIAQALCQSSE-------LAT 308

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228239   402 EVWRDLWPIERRRQREFFCFGMDILLKLDLDATRRFFDAFFDLQPHYWHGFLSSRLFLPELLVFGLSLFSHASNTSRLEI 481
Cdd:TIGR01790 309 AAWDGLWPTERRRQRYFRLLGRMLFLALEPEERRRFFQRFFGLPEELWERFLAARLSLPDLLRVLLRMFGQPPNPVRSAL 388
Lycopene_cycl pfam05834
Lycopene cyclase protein; This family consists of lycopene beta and epsilon cyclase proteins. ...
 84-479 0e+00

Lycopene cyclase protein; This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclization of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare.


Pssm-ID: 310433 [Multi-domain]  Cd Length: 380  Bit Score: 525.44  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228239    84 DLAIVGGGPAGLAVAQQVSEA--GLSVCSIDPSPKLIWPNNYgVWVDEFEAMD-LLDCLDTTWSGAVVYVDEGVKKDLSR 160
Cdd:pfam05834   1 DVVIIGAGPAGLSLAARLAAAkpGLSVVLIEPGPSLLRPNNY-VWSDEFEDLGaLEDCVGHSWPGTRVHFDDGKPILIGR 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228239   161 PYGRVNRKQLKSKMLQKCITNGVKFHQSKVTNVVHEEA-NSTVVCSDGVKIQASVVLDATG-FSRClvqydKPYNPGYQV 238
Cdd:pfam05834  80 AYGRVSSKRLEEEMLQRCVENGVIRLNAKVESVEADPVgESLVVCEGGRTIRARLVFDARGlGSLP-----PGRTLGYQT 154

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228239   239 AYGIVAEVDGHPFDVDKMVFMDWRDKHLdsypelkernSKIPTFLYAMPFSSNRIFLEETSLVARPGLRMEDIQERMAAR 318
Cdd:pfam05834 155 FYGVEVEVDNPPFDPDVMVLMDARVPQP----------LKGPTFLYALPLDPDRLLVEETYLSSGPVLPFDALKKRLAAY 224

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228239   319 LKHLGINVKRIEEDERCVIPM--GGPLPVLPQRVVGIGGTAGMVHPSTGYMVARTLAAAPIVANAIVRYLGSPssnslrg 396
Cdd:pfam05834 225 LRALGIRILEVVEEEQGVIPMtlGGDLPNTPQKVLRIGAAAGMVHPATGYSVARSLRLAPKLASAIAAALRLS------- 297

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228239   397 dQLSAEVWRDLWPIERRRQREFF-CFGMDILLKLDLDATRRFFDAFFDLQPHYWHGFLSSRLFLPELLVFGLSLFSHASN 475
Cdd:pfam05834 298 -SPSARAWRDLWPRERWRQRGFFrLLGRMLFLALDIEGRRRFFDAFFRLPKELWQRFLASRLSLADLLRIGLHTPVIPMN 376


                  ....
gi 15228239   476 TSRL 479
Cdd:pfam05834 377 RARA 380
FixC COG0644
Dehydrogenase (flavoprotein) [Energy production and conversion];
90-410 1.58e-19

Dehydrogenase (flavoprotein) [Energy production and conversion];


Pssm-ID: 440409 [Multi-domain]  Cd Length: 281  Bit Score: 88.49  E-value: 1.58e-19
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228239  90 GGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGV----WVDEFEAMDLLDCLDTTWSGAVVYVDEGVKKDLSRPYGR- 164
Cdd:COG0644   1 AGPAGSAAARRLARAGLSVLLLEKGSFPGDKICGGGllprALEELEPLGLDEPLERPVRGARFYSPGGKSVELPPGRGGg 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228239 165 --VNRKQLKSKMLQKCITNGVKFHQ-SKVTNVVHEEANSTVVCSDGVKIQASVVLDATGFS-----RCLVQYDKPYNPGY 236
Cdd:COG0644  81 yvVDRARFDRWLAEQAEEAGAEVRTgTRVTDVLRDDGRVVVRTGDGEEIRADYVVDADGARsllarKLGLKRRSDEPQDY 160

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228239 237 QVAYGIVAEVDGHPFDVDKMVFMDWRDKHLDSYpelkernskipTFLYamPFSSNRIfleetslvarpglrmediqerma 316
Cdd:COG0644 161 ALAIKEHWELPPLEGVDPGAVEFFFGEGAPGGY-----------GWVF--PLGDGRV----------------------- 204

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228239 317 arlkHLGinvkrieedercvIPMGGPLPVLP-QRVVGIGGTAGMVHPSTGYMVARTLAAAPIVANAIVRYLGSPSSNslr 395
Cdd:COG0644 205 ----SVG-------------IPLGGPRPRLVgDGVLLVGDAAGFVDPLTGEGIHLAMKSGRLAAEAIAEALEGGDFS--- 264

                       330
                ....*....|....*..
gi 15228239 396 GDQLSA--EVWRDLWPI 410
Cdd:COG0644 265 AEALAEyeRRLRELLKA 281
 
Name Accession Description Interval E-value
PLN02463 PLN02463
lycopene beta cyclase
 55-501 0e+00

lycopene beta cyclase


Pssm-ID: 178082 [Multi-domain]  Cd Length: 447  Bit Score: 942.60  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228239   55 ALLDLVPETKKENLDFELPLYDTSKSQVVDLAIVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVDEFEAMD 134
Cdd:PLN02463   1 ALLELVPETKKENLDFELPRFDPSKSRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEALG 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228239  135 LLDCLDTTWSGAVVYVDEGVKKDLSRPYGRVNRKQLKSKMLQKCITNGVKFHQSKVTNVVHEEANSTVVCSDGVKIQASV 214
Cdd:PLN02463  81 LLDCLDTTWPGAVVYIDDGKKKDLDRPYGRVNRKKLKSKMLERCIANGVQFHQAKVKKVVHEESKSLVVCDDGVKIQASL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228239  215 VLDATGFSRCLVQYDKPYNPGYQVAYGIVAEVDGHPFDVDKMVFMDWRDKHLDSYPELKERNSKIPTFLYAMPFSSNRIF 294
Cdd:PLN02463 161 VLDATGFSRCLVQYDKPFNPGYQVAYGILAEVDSHPFDLDKMLFMDWRDSHLGNNPELRARNSKLPTFLYAMPFSSNRIF 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228239  295 LEETSLVARPGLRMEDIQERMAARLKHLGINVKRIEEDERCVIPMGGPLPVLPQRVVGIGGTAGMVHPSTGYMVARTLAA 374
Cdd:PLN02463 241 LEETSLVARPGLPMDDIQERMVARLRHLGIKVKSVEEDEKCVIPMGGPLPVIPQRVLGIGGTAGMVHPSTGYMVARTLAA 320

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228239  375 APIVANAIVRYLGSPSSNSLRGDQLSAEVWRDLWPIERRRQREFFCFGMDILLKLDLDATRRFFDAFFDLQPHYWHGFLS 454
Cdd:PLN02463 321 APIVADAIVEYLGSSRSNSFRGDELSAEVWNDLWPIERRRQREFFCFGMDILLKLDLDGTRRFFDAFFDLEPHYWHGFLS 400

                        410       420       430       440
                 ....*....|....*....|....*....|....*....|....*..
gi 15228239  455 SRLFLPELLVFGLSLFSHASNTSRLEIMTKGTVPLAKMINNLVQDRD 501
Cdd:PLN02463 401 SRLFLPELLLFGLSLFSHASNTSRLEIMAKGTVPLVKMINNLIQDRI 447
carotene-cycl TIGR01790
lycopene cyclase family protein; This family includes lycopene beta and epsilion cyclases ...
 84-481 0e+00

lycopene cyclase family protein; This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.


Pssm-ID: 130850 [Multi-domain]  Cd Length: 388  Bit Score: 536.63  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228239    84 DLAIVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVYVDEGVKKDLSRPYG 163
Cdd:TIGR01790   1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTAYG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228239   164 RVNRKQLKSKMLQKCITNGVKFHQSKVTNVVHE-EANSTVVCSDGVKIQASVVLDATGFSRcLVQYDK-PYNPGYQVAYG 241
Cdd:TIGR01790  81 SVDSTRLHEELLQKCPEGGVLWLERKAIHAEADgVALSTVYCAGGQRIQARLVIDARGFGP-LVQYVRfPLNVGFQVAYG 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228239   242 IVAEVDGHPFDVDKMVFMDWRDKHLDSyPELKERNskiPTFLYAMPFSSNRIFLEETSLVARPGLRMEDIQERMAARLKH 321
Cdd:TIGR01790 160 VEARLSRPPHGPSSMVIMDARVDQLAA-PELKGYR---PTFLYAMPLGSTRVFIEETSLADRPALPRDRLRQRILARLNA 235

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228239   322 LGINVKRIEEDERCVIPMGGPLPVLPQRVVGIGGTAGMVHPSTGYMVARTLAAAPIVANAIVRYLGSPSSnslrgdqLSA 401
Cdd:TIGR01790 236 QGWQIKTIEEEEWGALPVGLPGPFLPQRVAAFGAAAGMVHPTTGYSVARALSDAPGLAAAIAQALCQSSE-------LAT 308

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228239   402 EVWRDLWPIERRRQREFFCFGMDILLKLDLDATRRFFDAFFDLQPHYWHGFLSSRLFLPELLVFGLSLFSHASNTSRLEI 481
Cdd:TIGR01790 309 AAWDGLWPTERRRQRYFRLLGRMLFLALEPEERRRFFQRFFGLPEELWERFLAARLSLPDLLRVLLRMFGQPPNPVRSAL 388
Lycopene_cycl pfam05834
Lycopene cyclase protein; This family consists of lycopene beta and epsilon cyclase proteins. ...
 84-479 0e+00

Lycopene cyclase protein; This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclization of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare.


Pssm-ID: 310433 [Multi-domain]  Cd Length: 380  Bit Score: 525.44  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228239    84 DLAIVGGGPAGLAVAQQVSEA--GLSVCSIDPSPKLIWPNNYgVWVDEFEAMD-LLDCLDTTWSGAVVYVDEGVKKDLSR 160
Cdd:pfam05834   1 DVVIIGAGPAGLSLAARLAAAkpGLSVVLIEPGPSLLRPNNY-VWSDEFEDLGaLEDCVGHSWPGTRVHFDDGKPILIGR 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228239   161 PYGRVNRKQLKSKMLQKCITNGVKFHQSKVTNVVHEEA-NSTVVCSDGVKIQASVVLDATG-FSRClvqydKPYNPGYQV 238
Cdd:pfam05834  80 AYGRVSSKRLEEEMLQRCVENGVIRLNAKVESVEADPVgESLVVCEGGRTIRARLVFDARGlGSLP-----PGRTLGYQT 154

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228239   239 AYGIVAEVDGHPFDVDKMVFMDWRDKHLdsypelkernSKIPTFLYAMPFSSNRIFLEETSLVARPGLRMEDIQERMAAR 318
Cdd:pfam05834 155 FYGVEVEVDNPPFDPDVMVLMDARVPQP----------LKGPTFLYALPLDPDRLLVEETYLSSGPVLPFDALKKRLAAY 224

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228239   319 LKHLGINVKRIEEDERCVIPM--GGPLPVLPQRVVGIGGTAGMVHPSTGYMVARTLAAAPIVANAIVRYLGSPssnslrg 396
Cdd:pfam05834 225 LRALGIRILEVVEEEQGVIPMtlGGDLPNTPQKVLRIGAAAGMVHPATGYSVARSLRLAPKLASAIAAALRLS------- 297

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228239   397 dQLSAEVWRDLWPIERRRQREFF-CFGMDILLKLDLDATRRFFDAFFDLQPHYWHGFLSSRLFLPELLVFGLSLFSHASN 475
Cdd:pfam05834 298 -SPSARAWRDLWPRERWRQRGFFrLLGRMLFLALDIEGRRRFFDAFFRLPKELWQRFLASRLSLADLLRIGLHTPVIPMN 376


                  ....
gi 15228239   476 TSRL 479
Cdd:pfam05834 377 RARA 380
PLN02697 PLN02697
lycopene epsilon cyclase
 80-482 4.86e-112

lycopene epsilon cyclase


Pssm-ID: 215375 [Multi-domain]  Cd Length: 529  Bit Score: 341.79  E-value: 4.86e-112
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228239   80 SQVVDLAIVGGGPAGLAVAQQVSEAGLSVCSIdpSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVYVDEGVKKDLS 159
Cdd:PLN02697 106 DGTLDLVVIGCGPAGLALAAESAKLGLNVGLI--GPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIMIG 183

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228239  160 RPYGRVNRKQLKSKMLQKCITNGVKFHQSKVTNVVH-EEANSTVVCSDGVKIQASVVLDATGF-SRCLVQYDKPyNPGY- 236
Cdd:PLN02697 184 RAYGRVSRTLLHEELLRRCVESGVSYLSSKVDRITEaSDGLRLVACEDGRVIPCRLATVASGAaSGRLLQYEVG-GPRVc 262

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228239  237 -QVAYGIVAEVDGHPFDVDKMVFMDWRDKHLDSYPELKERNskiPTFLYAMPFSSNRIFLEETSLVARPGLRMEDIQERM 315
Cdd:PLN02697 263 vQTAYGVEVEVENNPYDPSLMVFMDYRDYFKEKVSHLEAEY---PTFLYAMPMSSTRVFFEETCLASKDAMPFDLLKKRL 339

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228239  316 AARLKHLGINVKRIEEDERCVIPMGGPLPVLPQRVVGIGGTAGMVHPSTGYMVARTLAAAPIVANAIVRYLGSPSSNSLR 395
Cdd:PLN02697 340 MSRLETMGIRILKTYEEEWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPKYASVIARILKNVSSGGKL 419

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228239  396 G----DQLSAEVWRDLWPIERRRQREFFCFGMDILLKLDLDATRRFFDAFFDLQPHYWHGFLSSRLFLPELLVFGLSLFS 471
Cdd:PLN02697 420 GtsnsSNISMQAWNTLWPQERKRQRAFFLFGLALILQLDTEGIRTFFVTFFRLPKWMWQGFLGSTLSSVDLILFALYMFV 499

                        410
                 ....*....|.
gi 15228239  472 HASNTSRLEIM 482
Cdd:PLN02697 500 IAPNQLRMQLV 510
FixC COG0644
Dehydrogenase (flavoprotein) [Energy production and conversion];
90-410 1.58e-19

Dehydrogenase (flavoprotein) [Energy production and conversion];


Pssm-ID: 440409 [Multi-domain]  Cd Length: 281  Bit Score: 88.49  E-value: 1.58e-19
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228239  90 GGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGV----WVDEFEAMDLLDCLDTTWSGAVVYVDEGVKKDLSRPYGR- 164
Cdd:COG0644   1 AGPAGSAAARRLARAGLSVLLLEKGSFPGDKICGGGllprALEELEPLGLDEPLERPVRGARFYSPGGKSVELPPGRGGg 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228239 165 --VNRKQLKSKMLQKCITNGVKFHQ-SKVTNVVHEEANSTVVCSDGVKIQASVVLDATGFS-----RCLVQYDKPYNPGY 236
Cdd:COG0644  81 yvVDRARFDRWLAEQAEEAGAEVRTgTRVTDVLRDDGRVVVRTGDGEEIRADYVVDADGARsllarKLGLKRRSDEPQDY 160

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228239 237 QVAYGIVAEVDGHPFDVDKMVFMDWRDKHLDSYpelkernskipTFLYamPFSSNRIfleetslvarpglrmediqerma 316
Cdd:COG0644 161 ALAIKEHWELPPLEGVDPGAVEFFFGEGAPGGY-----------GWVF--PLGDGRV----------------------- 204

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228239 317 arlkHLGinvkrieedercvIPMGGPLPVLP-QRVVGIGGTAGMVHPSTGYMVARTLAAAPIVANAIVRYLGSPSSNslr 395
Cdd:COG0644 205 ----SVG-------------IPLGGPRPRLVgDGVLLVGDAAGFVDPLTGEGIHLAMKSGRLAAEAIAEALEGGDFS--- 264

                       330
                ....*....|....*..
gi 15228239 396 GDQLSA--EVWRDLWPI 410
Cdd:COG0644 265 AEALAEyeRRLRELLKA 281
lycopene_cycl TIGR01789
lycopene cyclase; This model represents a family of bacterial lycopene cyclases catalyzing the ...
 84-457 3.03e-11

lycopene cyclase; This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.


Pssm-ID: 130849  Cd Length: 370  Bit Score: 64.89  E-value: 3.03e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228239    84 DLAIVGGGPAG--LAVAQQVSEAGLSVCSIDPSPKlIWPNNYGVWVDEFEAMD----LLDCLDTTWSGAVVYVDEGVKKd 157
Cdd:TIGR01789   1 DCIIVGGGLAGglIALRLQRARPDFRIRVIEAGRT-IGGNHTWSFFDSDLSDAqhawLADLVQTDWPGYEVRFPKYRRK- 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228239   158 LSRPYGRVNRKQLKSKMLQKcITNGVKFHQSKVTnvVHEEAnstVVCSDGVKIQASVVLDATGFsrclvqydKP---YNP 234
Cdd:TIGR01789  79 LKTAYRSMTSTRFHEGLLQA-FPEGVILGRKAVG--LDADG---VDLAPGTRINARSVIDCRGF--------KPsahLKG 144

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228239   235 GYQVAYGIVAEVdGHPFDVDKMVFMDWRDKHLDSYpelkernskipTFLYAMPFSSNRIFLEETSLVARPGLRMEDIQER 314
Cdd:TIGR01789 145 GFQVFLGREMRL-QEPHGLENPIIMDATVDQLAGY-----------RFVYVLPLGSHDLLIEDTYYADDPLLDRNALSQR 212

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228239   315 MAARLKHLGINVKRIEEDERCVIP--MGGPLPVL--PQRVVGIGG-TAGMVHPSTGYmvarTLAAAPIVANAIVRYLgsp 389
Cdd:TIGR01789 213 IDQYARANGWQNGTPVRHEQGVLPvlLGGDFSAYqdEVRIVAIAGlRAGLTHPTTGY----SLPVAVENADALAAQP--- 285

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15228239   390 ssnSLRGDQLSAEVwrDLWPIERRRQREFFCFGMDILLKLDLDATR-RFFDAFFDLQPHYWHGFLSSRL 457
Cdd:TIGR01789 286 ---DLSSEQLAAFI--DSRARRHWSKTGYYRLLNRMLFFAAKPEKRvRVFQRFYGLREGLIERFYAARS 349
GG-red-SF TIGR02032
geranylgeranyl reductase family; This model represents a subfamily which includes ...
 84-382 8.81e-08

geranylgeranyl reductase family; This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates. [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]


Pssm-ID: 273936 [Multi-domain]  Cd Length: 295  Bit Score: 53.86  E-value: 8.81e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228239    84 DLAIVGGGPAGLAVAQQVSEAGLSVCSID----PSPK----LIWPNNygvwVDEFEAMDLLDCLDTtwSGAVVYVDEGVK 155
Cdd:TIGR02032   2 DVVVVGAGPAGASAAYRLADKGLRVLLLEkksfPRYKpcggALSPRA----LEELDLPGELIVNLV--RGARFFSPNGDS 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228239   156 KDLSRPYGR---VNRKQLKSKMLQKCITNGVKFHQSKVTNVVHEEANSTVVCSDGVKIQ--ASVVLDATGF-SRCLVQYD 229
Cdd:TIGR02032  76 VEIPIETELayvIDRDAFDEQLAERAQEAGAELRLGTRVLDVEIHDDRVVVIVRGSEGTvtAKIVIGADGSrSIVAKKLG 155

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228239   230 -KPYNPGYQVAYGIVAEVDGHPFDVDK-MVFMDWRDKHldsypelkernskiPTFLYAMPFSSNRIfleETSLVARPGLR 307
Cdd:TIGR02032 156 lKKEPREYGVAARAEVEMPDEEVDEDFvEVYIDRGIVP--------------GGYGWVFPKGDGTA---NVGVGSRSAEE 218

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15228239   308 MEDIQERMAARLKHLGINvKRIEEDERC--VIPMGGPL-PVLPQRVVGIGGTAGMVHPSTGYMVARTLAAAPIVANAI 382
Cdd:TIGR02032 219 GEDPKKYLKDFLARRPEL-KDAETVEVCgaLIPIGRPDeKLVRGNVLLVGDAAGHVNPLTGEGIYYAMRSGDIAAEVV 295
UbiH COG0654
2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme ...
 83-221 1.72e-07

2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme transport and metabolism, Energy production and conversion]; 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases is part of the Pathway/BioSystem: Ubiquinone biosynthesis


Pssm-ID: 440419 [Multi-domain]  Cd Length: 326  Bit Score: 53.02  E-value: 1.72e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228239  83 VDLAIVGGGPAGLAVAQQVSEAGLSVCSIDPSPKL--------IWPNNygvwVDEFEAMDLLDCLD---TTWSGAVVYVD 151
Cdd:COG0654   4 TDVLIVGGGPAGLALALALARAGIRVTVVERAPPPrpdgrgiaLSPRS----LELLRRLGLWDRLLargAPIRGIRVRDG 79

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15228239 152 EGVK-------KDLSRPYGR-VNRKQLKSKMLQKCITNGVKFH-QSKVTNVVHEEANSTVVCSDGVKIQASVVLDATGF 221
Cdd:COG0654  80 SDGRvlarfdaAETGLPAGLvVPRADLERALLEAARALGVELRfGTEVTGLEQDADGVTVTLADGRTLRADLVVGADGA 158
YhiN COG2081
Predicted flavoprotein YhiN [General function prediction only];
86-220 1.16e-06

Predicted flavoprotein YhiN [General function prediction only];


Pssm-ID: 441684 [Multi-domain]  Cd Length: 402  Bit Score: 50.82  E-value: 1.16e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228239  86 AIVGGGPAGLAVAQQVSEAGLSVCSID-----------------------PSPKLIwpNNYGV-------WVDEFEAMDL 135
Cdd:COG2081   1 IVIGAGAAGLMAAITAAERGARVLLLEknpkvgrkilisgggrcnftnsePLPEFL--NYYGGnphflksALSRFTPEDL 78

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228239 136 LDcldttwsgavvYVDE-GVK---KDLsrpyGRVNRKQLKSK-----MLQKCITNGVKFH-QSKVTNVVHEEANSTVVCS 205
Cdd:COG2081  79 IA-----------FFEGlGIEtkeESS----GRVFPDSSKASdilraLLAELREAGVEIRlRTRVTGIEKEDGGFGVETP 143

                       170
                ....*....|....*.
gi 15228239 206 DGVKIQA-SVVLdATG 220
Cdd:COG2081 144 DGETVRAdAVVL-ATG 158
PRK09126 PRK09126
FAD-dependent hydroxylase;
80-115 1.02e-05

FAD-dependent hydroxylase;


Pssm-ID: 236385 [Multi-domain]  Cd Length: 392  Bit Score: 47.63  E-value: 1.02e-05
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 15228239   80 SQVVDLAIVGGGPAGLAVAQQVSEAGLSVCSIDPSP 115
Cdd:PRK09126   1 MMHSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQP 36
DAO pfam01266
FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: ...
 84-370 1.62e-05

FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.


Pssm-ID: 426168 [Multi-domain]  Cd Length: 339  Bit Score: 47.01  E-value: 1.62e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228239    84 DLAIVGGGPAGLAVAQQVSEAGLSVCSIDPSP-----------KLIWPNNYGV--------------WVDEFEAMDLLDC 138
Cdd:pfam01266   1 DVVVIGGGIVGLSTAYELARRGLSVTLLERGDdpgsgasgrnaGLIHPGLRYLepselarlalealdLWEELEEELGIDC 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228239   139 lDTTWSGAVVYVDEGVKKDLSRPYGRVNRKQLKSKML-------------------------------------QKCITN 181
Cdd:pfam01266  81 -GFRRCGVLVLARDEEEEALEKLLAALRRLGVPAELLdaeelrelepllpglrgglfypdgghvdparllralaRAAEAL 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228239   182 GVKFH-QSKVTNVVHEEANSTVVCSDGVKiqasVVLDATGFSRCLVQYDKPYNPGYQVaYGIVAEVDGHPFDVDKMVFMD 260
Cdd:pfam01266 160 GVRIIeGTEVTGIEEEGGVWGVVTTGEAD----AVVNAAGAWADLLALPGLRLPVRPV-RGQVLVLEPLPEALLILPVPI 234

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228239   261 WRDKHLDsypelkernskiptfLYAMPFSSNRIFL---EETSLVARPGLRMEDIQErMAARLKHLGINVKRIEEDERCVI 337
Cdd:pfam01266 235 TVDPGRG---------------VYLRPRADGRLLLggtDEEDGFDDPTPDPEEIEE-LLEAARRLFPALADIERAWAGLR 298

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|
gi 15228239   338 PMGGPLPVL----PQRVV---GIGGTAGMVHPSTGYMVAR 370
Cdd:pfam01266 299 PLPDGLPIIgrpgSPGLYlatGHGGHGLTLAPGIGKLLAE 338
PRK08163 PRK08163
3-hydroxybenzoate 6-monooxygenase;
87-270 3.29e-05

3-hydroxybenzoate 6-monooxygenase;


Pssm-ID: 181262 [Multi-domain]  Cd Length: 396  Bit Score: 46.18  E-value: 3.29e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228239   87 IVGGGPAGLAVAQQVSEAGLSVCSIDPSPKL--------IWPNNY---------------GVWVDEFEAMDLLDCLDTTw 143
Cdd:PRK08163   9 IVGGGIGGLAAALALARQGIKVKLLEQAAEIgeigagiqLGPNAFsaldalgvgeaarqrAVFTDHLTMMDAVDAEEVV- 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228239  144 sgaVVYVDEGVKKDLSRPYGRVNRKQLKSKMLQKCITNG-VKFHQS-KVTNVVHEEANSTVVCSDGVKIQASVVLDATGF 221
Cdd:PRK08163  88 ---RIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPlVEFRTStHVVGIEQDGDGVTVFDQQGNRWTGDALIGCDGV 164

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 15228239  222 -SRCLVQY--DKPYNPGYqVAYGIVAEVDGHPFDVDKMVFMDWRDK--HLDSYP 270
Cdd:PRK08163 165 kSVVRQSLvgDAPRVTGH-VVYRAVIDVDDMPEDLRINAPVLWAGPhcHLVHYP 217
PRK07494 PRK07494
UbiH/UbiF family hydroxylase;
77-115 2.47e-04

UbiH/UbiF family hydroxylase;


Pssm-ID: 181001 [Multi-domain]  Cd Length: 388  Bit Score: 43.35  E-value: 2.47e-04
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 15228239   77 TSKSQVVDLAIVGGGPAGLAVAQQVSEAGLSVCSIDPSP 115
Cdd:PRK07494   2 LMEKEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEP 40
TrxB COG0492
Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones];
84-222 5.47e-04

Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440258 [Multi-domain]  Cd Length: 305  Bit Score: 42.03  E-value: 5.47e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228239  84 DLAIVGGGPAGLAVAQQVSEAGLSVCSID-PSP-------KLIWpnNYGVWVDEFEAMDLLDcldttwsgavvyvdegvk 155
Cdd:COG0492   2 DVVIIGAGPAGLTAAIYAARAGLKTLVIEgGEPggqlattKEIE--NYPGFPEGISGPELAE------------------ 61

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15228239 156 kdlsrpygrvnrkqlksKMLQKCITNGVKFHQSKVTNVVHEEANSTVVCSDGVKIQASVVLDATGFS 222
Cdd:COG0492  62 -----------------RLREQAERFGAEILLEEVTSVDKDDGPFRVTTDDGTEYEAKAVIIATGAG 111
COG3380 COG3380
Predicted NAD/FAD-dependent oxidoreductase [General function prediction only];
84-108 1.12e-03

Predicted NAD/FAD-dependent oxidoreductase [General function prediction only];


Pssm-ID: 442607 [Multi-domain]  Cd Length: 331  Bit Score: 41.02  E-value: 1.12e-03
                        10        20
                ....*....|....*....|....*
gi 15228239  84 DLAIVGGGPAGLAVAQQVSEAGLSV 108
Cdd:COG3380   5 DIAIIGAGIAGLAAARALQDAGHEV 29
PRK06292 PRK06292
dihydrolipoamide dehydrogenase; Validated
 83-115 2.10e-03

dihydrolipoamide dehydrogenase; Validated


Pssm-ID: 235774 [Multi-domain]  Cd Length: 460  Bit Score: 40.55  E-value: 2.10e-03
                         10        20        30
                 ....*....|....*....|....*....|...
gi 15228239   83 VDLAIVGGGPAGLAVAQQVSEAGLSVCSIDPSP 115
Cdd:PRK06292   4 YDVIVIGAGPAGYVAARRAAKLGKKVALIEKGP 36
gltD PRK12810
glutamate synthase subunit beta; Reviewed
 86-108 2.53e-03

glutamate synthase subunit beta; Reviewed


Pssm-ID: 237213 [Multi-domain]  Cd Length: 471  Bit Score: 40.15  E-value: 2.53e-03
                         10        20
                 ....*....|....*....|...
gi 15228239   86 AIVGGGPAGLAVAQQVSEAGLSV 108
Cdd:PRK12810 147 AVVGSGPAGLAAADQLARAGHKV 169
FAD_oxidored pfam12831
FAD dependent oxidoreductase; This family of proteins contains FAD dependent oxidoreductases ...
 84-117 2.57e-03

FAD dependent oxidoreductase; This family of proteins contains FAD dependent oxidoreductases and related proteins.


Pssm-ID: 432816 [Multi-domain]  Cd Length: 420  Bit Score: 40.28  E-value: 2.57e-03
                          10        20        30
                  ....*....|....*....|....*....|....
gi 15228239    84 DLAIVGGGPAGLAVAQQVSEAGLSVCSIDPSPKL 117
Cdd:pfam12831   1 DVVVVGGGPAGVAAAIAAARAGAKVLLVERRGFL 34
GltD COG0493
NADPH-dependent glutamate synthase beta chain or related oxidoreductase [Amino acid transport ...
 86-108 3.55e-03

NADPH-dependent glutamate synthase beta chain or related oxidoreductase [Amino acid transport and metabolism, General function prediction only]; NADPH-dependent glutamate synthase beta chain or related oxidoreductase is part of the Pathway/BioSystem: Glutamine biosynthesis


Pssm-ID: 440259 [Multi-domain]  Cd Length: 434  Bit Score: 39.73  E-value: 3.55e-03
                        10        20
                ....*....|....*....|...
gi 15228239  86 AIVGGGPAGLAVAQQVSEAGLSV 108
Cdd:COG0493 125 AVVGSGPAGLAAAYQLARAGHEV 147
HI0933_like pfam03486
HI0933-like protein;
84-117 3.81e-03

HI0933-like protein;


Pssm-ID: 427330 [Multi-domain]  Cd Length: 406  Bit Score: 39.49  E-value: 3.81e-03
                          10        20        30
                  ....*....|....*....|....*....|....
gi 15228239    84 DLAIVGGGPAGLAVAQQVSEAGLSVCSIDPSPKL 117
Cdd:pfam03486   2 DVIVIGGGAAGLMAAISAAKRGRRVLLIEKGKKL 35
FAD_binding_3 pfam01494
FAD binding domain; This domain is involved in FAD binding in a number of enzymes.
 83-112 3.88e-03

FAD binding domain; This domain is involved in FAD binding in a number of enzymes.


Pssm-ID: 396193 [Multi-domain]  Cd Length: 348  Bit Score: 39.62  E-value: 3.88e-03
                          10        20        30
                  ....*....|....*....|....*....|
gi 15228239    83 VDLAIVGGGPAGLAVAQQVSEAGLSVCSID 112
Cdd:pfam01494   2 TDVLIVGGGPAGLMLALLLARAGVRVVLVE 31
Lpd COG1249
Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex ...
 83-112 4.51e-03

Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex or glutathione oxidoreductase [Energy production and conversion]; Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex or glutathione oxidoreductase is part of the Pathway/BioSystem: Glycine cleavagePyruvate oxidation


Pssm-ID: 440861 [Multi-domain]  Cd Length: 456  Bit Score: 39.30  E-value: 4.51e-03
                        10        20        30
                ....*....|....*....|....*....|
gi 15228239  83 VDLAIVGGGPAGLAVAQQVSEAGLSVCSID 112
Cdd:COG1249   4 YDLVVIGAGPGGYVAAIRAAQLGLKVALVE 33
CzcO COG2072
Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD [Inorganic ...
 77-236 5.85e-03

Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD [Inorganic ion transport and metabolism];


Pssm-ID: 441675 [Multi-domain]  Cd Length: 414  Bit Score: 39.08  E-value: 5.85e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228239  77 TSKSQVVDLAIVGGGPAGLAVAQQVSEAGLSVCSIDPSPKL--IW-PNNY-GV------WVDEFEAMDLLDCLDTTWSGA 146
Cdd:COG2072   1 TAATEHVDVVVIGAGQAGLAAAYHLRRAGIDFVVLEKADDVggTWrDNRYpGLrldtpsHLYSLPFFPNWSDDPDFPTGD 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228239 147 VV--YVDEGVKK-DLSRPygrvnrkqlkskmlqkcitngVKFHQsKVTNVVHEEANS--TVVCSDGVKIQASVVLDATGf 221
Cdd:COG2072  81 EIlaYLEAYADKfGLRRP---------------------IRFGT-EVTSARWDEADGrwTVTTDDGETLTARFVVVATG- 137

                       170
                ....*....|....*
gi 15228239 222 srclvQYDKPYNPGY 236
Cdd:COG2072 138 -----PLSRPKIPDI 147
PRK08850 PRK08850
2-octaprenyl-6-methoxyphenol hydroxylase; Validated
 81-117 6.51e-03

2-octaprenyl-6-methoxyphenol hydroxylase; Validated


Pssm-ID: 236341 [Multi-domain]  Cd Length: 405  Bit Score: 38.98  E-value: 6.51e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|
gi 15228239   81 QVVDLAIVGGGPAGLAVAQQVSEAGLSVCSID---PSPKL 117
Cdd:PRK08850   3 QSVDVAIIGGGMVGLALAAALKESDLRIAVIEgqlPEEAL 42
PRK11749 PRK11749
dihydropyrimidine dehydrogenase subunit A; Provisional
 86-108 7.64e-03

dihydropyrimidine dehydrogenase subunit A; Provisional


Pssm-ID: 236967 [Multi-domain]  Cd Length: 457  Bit Score: 38.62  E-value: 7.64e-03
                         10        20
                 ....*....|....*....|...
gi 15228239   86 AIVGGGPAGLAVAQQVSEAGLSV 108
Cdd:PRK11749 144 AVIGAGPAGLTAAHRLARKGYDV 166
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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