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Conserved domains on  [gi|15231922|ref|NP_187463|]
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myb domain protein 83 [Arabidopsis thaliana]

Protein Classification

SANT/Myb-like DNA-binding domain-containing protein( domain architecture ID 999994)

SANT (SWI3, ADA2, N-CoR and TFIIIB)/Myb-like DNA-binding domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN03091 super family cl33633
hypothetical protein; Provisional
 27-135 5.91e-64

hypothetical protein; Provisional


The actual alignment was detected with superfamily member PLN03091:

Pssm-ID: 215570 [Multi-domain]  Cd Length: 459  Bit Score: 209.83  E-value: 5.91e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231922   27 KPKLRKGLWSPDEDEKLIRYMLTNGQGCWSDIARNAGLLRCGKSCRLRWINYLRPDLKRGSFSPQEEDLIFHLHSILGNR 106
Cdd:PLN03091   9 KQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGNR 88

                         90       100
                 ....*....|....*....|....*....
gi 15231922  107 WSQIATRLPGRTDNEIKNFWNSTLKKRLK 135
Cdd:PLN03091  89 WSQIAAQLPGRTDNEIKNLWNSCLKKKLR 117
 
Name Accession Description Interval E-value
PLN03091 PLN03091
hypothetical protein; Provisional
 27-135 5.91e-64

hypothetical protein; Provisional


Pssm-ID: 215570 [Multi-domain]  Cd Length: 459  Bit Score: 209.83  E-value: 5.91e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231922   27 KPKLRKGLWSPDEDEKLIRYMLTNGQGCWSDIARNAGLLRCGKSCRLRWINYLRPDLKRGSFSPQEEDLIFHLHSILGNR 106
Cdd:PLN03091   9 KQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGNR 88

                         90       100
                 ....*....|....*....|....*....
gi 15231922  107 WSQIATRLPGRTDNEIKNFWNSTLKKRLK 135
Cdd:PLN03091  89 WSQIAAQLPGRTDNEIKNLWNSCLKKKLR 117
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 85-130 8.28e-15

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 67.53  E-value: 8.28e-15
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 15231922    85 RGSFSPQEEDLIFHLHSILGNRWSQIATRLPGRTDNEIKNFWNSTL 130
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLGNRWKKIAKLLPGRTDNQCKNRWQNYL 46
REB1 COG5147
Myb superfamily proteins, including transcription factors and mRNA splicing factors ...
 29-135 8.41e-13

Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning];


Pssm-ID: 227476 [Multi-domain]  Cd Length: 512  Bit Score: 69.05  E-value: 8.41e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231922  29 KLRKGLWSPDEDE---KLIRYMLTNGqgcWSDIArNAGLLRCGKSCRLRWINYLRPDLKRGSFSPQEEDLIFHLHSILGN 105
Cdd:COG5147  17 KRKGGSWKRTEDEdlkALVKKLGPNN---WSKVA-SLLISSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGT 92

                        90       100       110
                ....*....|....*....|....*....|
gi 15231922 106 RWSQIATRLPGRTDNEIKNFWNSTLKKRLK 135
Cdd:COG5147  93 QWSTIADYKDRRTAQQCVERYVNTLEDLSS 122
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
85-132 1.20e-11

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 58.77  E-value: 1.20e-11
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 15231922     85 RGSFSPQEEDLIFHLHSILG-NRWSQIATRLPGRTDNEIKNFWNSTLKK 132
Cdd:smart00717   1 KGEWTEEEDELLIELVKKYGkNNWEKIAKELPGRTAEQCRERWRNLLKP 49
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 87-130 9.19e-11

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 56.43  E-value: 9.19e-11
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*
gi 15231922  87 SFSPQEEDLIFHLHSILG-NRWSQIATRLPGRTDNEIKNFWNSTL 130
Cdd:cd00167   1 PWTEEEDELLLEAVKKYGkNNWEKIAKELPGRTPKQCRERWRNLL 45
 
Name Accession Description Interval E-value
PLN03091 PLN03091
hypothetical protein; Provisional
 27-135 5.91e-64

hypothetical protein; Provisional


Pssm-ID: 215570 [Multi-domain]  Cd Length: 459  Bit Score: 209.83  E-value: 5.91e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231922   27 KPKLRKGLWSPDEDEKLIRYMLTNGQGCWSDIARNAGLLRCGKSCRLRWINYLRPDLKRGSFSPQEEDLIFHLHSILGNR 106
Cdd:PLN03091   9 KQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGNR 88

                         90       100
                 ....*....|....*....|....*....
gi 15231922  107 WSQIATRLPGRTDNEIKNFWNSTLKKRLK 135
Cdd:PLN03091  89 WSQIAAQLPGRTDNEIKNLWNSCLKKKLR 117
PLN03212 PLN03212
Transcription repressor MYB5; Provisional
 20-134 1.98e-42

Transcription repressor MYB5; Provisional


Pssm-ID: 178751 [Multi-domain]  Cd Length: 249  Bit Score: 147.53  E-value: 1.98e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231922   20 ACGGNN----------NKPKLRKGLWSPDEDEKLIRYMLTNGQGCWSDIARNAGLLRCGKSCRLRWINYLRPDLKRGSFS 89
Cdd:PLN03212   3 SCGGKKpvskkttpccTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGIT 82

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 15231922   90 PQEEDLIFHLHSILGNRWSQIATRLPGRTDNEIKNFWNSTLKKRL 134
Cdd:PLN03212  83 SDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKL 127
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 85-130 8.28e-15

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 67.53  E-value: 8.28e-15
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 15231922    85 RGSFSPQEEDLIFHLHSILGNRWSQIATRLPGRTDNEIKNFWNSTL 130
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLGNRWKKIAKLLPGRTDNQCKNRWQNYL 46
REB1 COG5147
Myb superfamily proteins, including transcription factors and mRNA splicing factors ...
 29-135 8.41e-13

Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning];


Pssm-ID: 227476 [Multi-domain]  Cd Length: 512  Bit Score: 69.05  E-value: 8.41e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231922  29 KLRKGLWSPDEDE---KLIRYMLTNGqgcWSDIArNAGLLRCGKSCRLRWINYLRPDLKRGSFSPQEEDLIFHLHSILGN 105
Cdd:COG5147  17 KRKGGSWKRTEDEdlkALVKKLGPNN---WSKVA-SLLISSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGT 92

                        90       100       110
                ....*....|....*....|....*....|
gi 15231922 106 RWSQIATRLPGRTDNEIKNFWNSTLKKRLK 135
Cdd:COG5147  93 QWSTIADYKDRRTAQQCVERYVNTLEDLSS 122
Myb_DNA-bind_6 pfam13921
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 35-93 5.19e-12

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 372817 [Multi-domain]  Cd Length: 60  Bit Score: 60.40  E-value: 5.19e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 15231922    35 WSPDEDEKLIRYMLTNGQGcWSDIARNAGLlRCGKSCRLRWINYLRPDLKRGSFSPQEE 93
Cdd:pfam13921   1 WTEEEDEKLLKLVEKYGND-WKQIAKELGR-RTPKQCFDRWRRKLNPKISRGPWSKEED 57
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
85-132 1.20e-11

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 58.77  E-value: 1.20e-11
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 15231922     85 RGSFSPQEEDLIFHLHSILG-NRWSQIATRLPGRTDNEIKNFWNSTLKK 132
Cdd:smart00717   1 KGEWTEEEDELLIELVKKYGkNNWEKIAKELPGRTAEQCRERWRNLLKP 49
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 32-79 3.14e-11

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 57.51  E-value: 3.14e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 15231922    32 KGLWSPDEDEKLIRYMLTNGqGCWSDIARNAGLlRCGKSCRLRWINYL 79
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLG-NRWKKIAKLLPG-RTDNQCKNRWQNYL 46
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 87-130 9.19e-11

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 56.43  E-value: 9.19e-11
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*
gi 15231922  87 SFSPQEEDLIFHLHSILG-NRWSQIATRLPGRTDNEIKNFWNSTL 130
Cdd:cd00167   1 PWTEEEDELLLEAVKKYGkNNWEKIAKELPGRTPKQCRERWRNLL 45
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
32-81 2.76e-10

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 54.92  E-value: 2.76e-10
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 15231922     32 KGLWSPDEDEKLIRYMLTNGQGCWSDIARNAGlLRCGKSCRLRWINYLRP 81
Cdd:smart00717   1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELP-GRTAEQCRERWRNLLKP 49
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 35-79 3.80e-10

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 54.50  E-value: 3.80e-10
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*
gi 15231922  35 WSPDEDEKLIRYMLTNGQGCWSDIARNAGlLRCGKSCRLRWINYL 79
Cdd:cd00167   2 WTEEEDELLLEAVKKYGKNNWEKIAKELP-GRTPKQCRERWRNLL 45
Myb_DNA-bind_6 pfam13921
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 88-135 4.67e-05

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 372817 [Multi-domain]  Cd Length: 60  Bit Score: 40.76  E-value: 4.67e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 15231922    88 FSPQEEDLIFHLHSILGNRWSQIATRLPGRTDNEIKNFWNSTLKKRLK 135
Cdd:pfam13921   1 WTEEEDEKLLKLVEKYGNDWKQIAKELGRRTPKQCFDRWRRKLNPKIS 48
SANT_CDC5_II cd11659
SANT/myb-like DNA-binding domain of Cell Division Cycle 5-Like Protein repeat II; In humans, ...
 81-120 6.95e-03

SANT/myb-like DNA-binding domain of Cell Division Cycle 5-Like Protein repeat II; In humans, cell division cycle 5-like protein (CDC5) functions in pre-mRNA splicing in cell cycle control. The DNA-binding, myb-like domain of CDC5 is a member of the SANT/myb group. SANT is named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. The SANT domain resembles the 3 alpha-helix bundle of DNA-binding Myb domains and is found in a diverse set of proteins.


Pssm-ID: 212557 [Multi-domain]  Cd Length: 53  Bit Score: 34.21  E-value: 6.95e-03
                        10        20        30        40
                ....*....|....*....|....*....|....*....|
gi 15231922  81 PDLKRGSFSPQEEDLIFHLHSILGNRWSQIAtRLPGRTDN 120
Cdd:cd11659   1 PSIKKTEWTREEDEKLLHLAKLLPTQWRTIA-PIVGRTAQ 39
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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