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Conserved domains on  [gi|15230773|ref|NP_187326|]
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Ribosomal L29e protein family [Arabidopsis thaliana]

Protein Classification

eL29 family ribosomal protein( domain architecture ID 10484832)

eL29 family ribosomal protein is a component of the large ribosomal subunit which is also involved in a variety of cellular processes, such as cell-to-cell communication, adhesion, differentiation, proliferation and blood coagulation modulation.

Gene Ontology:  GO:0003735
PubMed:  24524803|32429214

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ribosomal_L29e pfam01779
Ribosomal L29e protein family;
4-42 9.77e-15

Ribosomal L29e protein family;


:

Pssm-ID: 460324  Cd Length: 39  Bit Score: 60.66  E-value: 9.77e-15
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 15230773    4 SKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRN 42
Cdd:pfam01779  1 SKNHTNHNQNRKAHRNGIKKPKSHRYTSLKGVDPKFLRN 39
 
Name Accession Description Interval E-value
Ribosomal_L29e pfam01779
Ribosomal L29e protein family;
4-42 9.77e-15

Ribosomal L29e protein family;


Pssm-ID: 460324  Cd Length: 39  Bit Score: 60.66  E-value: 9.77e-15
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 15230773    4 SKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRN 42
Cdd:pfam01779  1 SKNHTNHNQNRKAHRNGIKKPKSHRYTSLKGVDPKFLRN 39
PTZ00190 PTZ00190
60S ribosomal protein L29; Provisional
 1-60 6.82e-04

60S ribosomal protein L29; Provisional


Pssm-ID: 140217  Cd Length: 70  Bit Score: 33.88  E-value: 6.82e-04
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 15230773   1 MAKSKNHTAHNQSAKAHKNGIKKPR-RHRHTPTRGMDPKFLRNQRYARKHNVKAGENASAE 60
Cdd:PTZ00190  1 MAKSKNHTNHNQSSKNHRNGIKGPLpLHLHNSKRGSWLPALVNARRVRKHNQKAALKARRE 61
 
Name Accession Description Interval E-value
Ribosomal_L29e pfam01779
Ribosomal L29e protein family;
4-42 9.77e-15

Ribosomal L29e protein family;


Pssm-ID: 460324  Cd Length: 39  Bit Score: 60.66  E-value: 9.77e-15
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 15230773    4 SKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRN 42
Cdd:pfam01779  1 SKNHTNHNQNRKAHRNGIKKPKSHRYTSLKGVDPKFLRN 39
PTZ00190 PTZ00190
60S ribosomal protein L29; Provisional
 1-60 6.82e-04

60S ribosomal protein L29; Provisional


Pssm-ID: 140217  Cd Length: 70  Bit Score: 33.88  E-value: 6.82e-04
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 15230773   1 MAKSKNHTAHNQSAKAHKNGIKKPR-RHRHTPTRGMDPKFLRNQRYARKHNVKAGENASAE 60
Cdd:PTZ00190  1 MAKSKNHTNHNQSSKNHRNGIKGPLpLHLHNSKRGSWLPALVNARRVRKHNQKAALKARRE 61
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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