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Conserved domains on  [gi|79395677|ref|NP_187292|]
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Zinc finger C-x8-C-x5-C-x3-H type family protein [Arabidopsis thaliana]

Protein Classification

zinc finger CCCH domain-containing protein( domain architecture ID 10457906)

zinc finger CCCH domain-containing protein similar to Homo sapiens proline-rich protein 3 (PRR3)

CATH:  4.10.1000.10
Gene Ontology:  GO:0046872|GO:0003676
PubMed:  12665246|27990022
SCOP:  3001741

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
102-127 7.08e-08

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


:

Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 47.96  E-value: 7.08e-08
                          10        20
                  ....*....|....*....|....*.
gi 79395677   102 GHPVCQHFMRTGTCKFGASCKYHHPR 127
Cdd:pfam00642   2 KTELCRFFLRTGYCKYGDRCKFAHGQ 27
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
308-334 1.49e-07

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


:

Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 47.19  E-value: 1.49e-07
                          10        20
                  ....*....|....*....|....*..
gi 79395677   308 PDQPECQYFMRTGDCKFGSSCRYHHPV 334
Cdd:pfam00642   1 YKTELCRFFLRTGYCKYGDRCKFAHGQ 27
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
55-81 1.05e-06

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


:

Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 44.88  E-value: 1.05e-06
                          10        20
                  ....*....|....*....|....*..
gi 79395677    55 PDEPDCIYYLRTGVCGYGSRCRFNHPR 81
Cdd:pfam00642   1 YKTELCRFFLRTGYCKYGDRCKFAHGQ 27
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
149-175 1.84e-06

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


:

Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 44.11  E-value: 1.84e-06
                          10        20
                  ....*....|....*....|....*..
gi 79395677   149 PGEKECSYYLRTGQCKFGLTCRFNHPV 175
Cdd:pfam00642   1 YKTELCRFFLRTGYCKYGDRCKFAHGQ 27
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
354-378 8.83e-05

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


:

Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 39.48  E-value: 8.83e-05
                          10        20
                  ....*....|....*....|....*
gi 79395677   354 PGVAQCTHFAQHGICKFGPACKFDH 378
Cdd:pfam00642   1 YKTELCRFFLRTGYCKYGDRCKFAH 25
 
Name Accession Description Interval E-value
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
102-127 7.08e-08

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 47.96  E-value: 7.08e-08
                          10        20
                  ....*....|....*....|....*.
gi 79395677   102 GHPVCQHFMRTGTCKFGASCKYHHPR 127
Cdd:pfam00642   2 KTELCRFFLRTGYCKYGDRCKFAHGQ 27
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
308-334 1.49e-07

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 47.19  E-value: 1.49e-07
                          10        20
                  ....*....|....*....|....*..
gi 79395677   308 PDQPECQYFMRTGDCKFGSSCRYHHPV 334
Cdd:pfam00642   1 YKTELCRFFLRTGYCKYGDRCKFAHGQ 27
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
55-81 1.05e-06

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 44.88  E-value: 1.05e-06
                          10        20
                  ....*....|....*....|....*..
gi 79395677    55 PDEPDCIYYLRTGVCGYGSRCRFNHPR 81
Cdd:pfam00642   1 YKTELCRFFLRTGYCKYGDRCKFAHGQ 27
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
149-175 1.84e-06

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 44.11  E-value: 1.84e-06
                          10        20
                  ....*....|....*....|....*..
gi 79395677   149 PGEKECSYYLRTGQCKFGLTCRFNHPV 175
Cdd:pfam00642   1 YKTELCRFFLRTGYCKYGDRCKFAHGQ 27
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
354-378 8.83e-05

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 39.48  E-value: 8.83e-05
                          10        20
                  ....*....|....*....|....*
gi 79395677   354 PGVAQCTHFAQHGICKFGPACKFDH 378
Cdd:pfam00642   1 YKTELCRFFLRTGYCKYGDRCKFAH 25
ZnF_C3H1 smart00356
zinc finger;
102-127 7.76e-04

zinc finger;


Pssm-ID: 214632 [Multi-domain]  Cd Length: 27  Bit Score: 36.84  E-value: 7.76e-04
                           10        20
                   ....*....|....*....|....*.
gi 79395677    102 GHPVCQHFmRTGTCKFGASCKYHHPR 127
Cdd:smart00356   3 KTELCKFF-KRGYCPRGDRCKFAHPL 27
ZnF_C3H1 smart00356
zinc finger;
148-174 8.53e-03

zinc finger;


Pssm-ID: 214632 [Multi-domain]  Cd Length: 27  Bit Score: 33.76  E-value: 8.53e-03
                           10        20
                   ....*....|....*....|....*..
gi 79395677    148 RPGEKECSYYlRTGQCKFGLTCRFNHP 174
Cdd:smart00356   1 KYKTELCKFF-KRGYCPRGDRCKFAHP 26
 
Name Accession Description Interval E-value
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
102-127 7.08e-08

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 47.96  E-value: 7.08e-08
                          10        20
                  ....*....|....*....|....*.
gi 79395677   102 GHPVCQHFMRTGTCKFGASCKYHHPR 127
Cdd:pfam00642   2 KTELCRFFLRTGYCKYGDRCKFAHGQ 27
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
308-334 1.49e-07

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 47.19  E-value: 1.49e-07
                          10        20
                  ....*....|....*....|....*..
gi 79395677   308 PDQPECQYFMRTGDCKFGSSCRYHHPV 334
Cdd:pfam00642   1 YKTELCRFFLRTGYCKYGDRCKFAHGQ 27
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
55-81 1.05e-06

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 44.88  E-value: 1.05e-06
                          10        20
                  ....*....|....*....|....*..
gi 79395677    55 PDEPDCIYYLRTGVCGYGSRCRFNHPR 81
Cdd:pfam00642   1 YKTELCRFFLRTGYCKYGDRCKFAHGQ 27
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
149-175 1.84e-06

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 44.11  E-value: 1.84e-06
                          10        20
                  ....*....|....*....|....*..
gi 79395677   149 PGEKECSYYLRTGQCKFGLTCRFNHPV 175
Cdd:pfam00642   1 YKTELCRFFLRTGYCKYGDRCKFAHGQ 27
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
354-378 8.83e-05

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 39.48  E-value: 8.83e-05
                          10        20
                  ....*....|....*....|....*
gi 79395677   354 PGVAQCTHFAQHGICKFGPACKFDH 378
Cdd:pfam00642   1 YKTELCRFFLRTGYCKYGDRCKFAH 25
ZnF_C3H1 smart00356
zinc finger;
102-127 7.76e-04

zinc finger;


Pssm-ID: 214632 [Multi-domain]  Cd Length: 27  Bit Score: 36.84  E-value: 7.76e-04
                           10        20
                   ....*....|....*....|....*.
gi 79395677    102 GHPVCQHFmRTGTCKFGASCKYHHPR 127
Cdd:smart00356   3 KTELCKFF-KRGYCPRGDRCKFAHPL 27
ZnF_C3H1 smart00356
zinc finger;
148-174 8.53e-03

zinc finger;


Pssm-ID: 214632 [Multi-domain]  Cd Length: 27  Bit Score: 33.76  E-value: 8.53e-03
                           10        20
                   ....*....|....*....|....*..
gi 79395677    148 RPGEKECSYYlRTGQCKFGLTCRFNHP 174
Cdd:smart00356   1 KYKTELCKFF-KRGYCPRGDRCKFAHP 26
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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