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Conserved domains on  [gi|15230683|ref|NP_187279|]
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F-box associated ubiquitination effector family protein [Arabidopsis thaliana]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FBA_3 super family cl23987
F-box associated domain;
74-150 6.91e-18

F-box associated domain;


The actual alignment was detected with superfamily member pfam08268:

Pssm-ID: 451644  Cd Length: 125  Bit Score: 75.79  E-value: 6.91e-18
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15230683    74 LLTYEGKLAsLASATYVKaFISLWVLEDAERHAWSFRTFSLTFPLDDPILDTFLELTGVTEAGEFVYA-PTTLQSPFH 150
Cdd:pfam08268  49 LINYKGKLA-VVSHTSDG-GIELWVLEDAEKHEWSKKIFVLPPSHEHLVDNTDLSVVGTTRTGEIILVlPSTLSKPFY 124
 
Name Accession Description Interval E-value
FBA_3 pfam08268
F-box associated domain;
74-150 6.91e-18

F-box associated domain;


Pssm-ID: 285468  Cd Length: 125  Bit Score: 75.79  E-value: 6.91e-18
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15230683    74 LLTYEGKLAsLASATYVKaFISLWVLEDAERHAWSFRTFSLTFPLDDPILDTFLELTGVTEAGEFVYA-PTTLQSPFH 150
Cdd:pfam08268  49 LINYKGKLA-VVSHTSDG-GIELWVLEDAEKHEWSKKIFVLPPSHEHLVDNTDLSVVGTTRTGEIILVlPSTLSKPFY 124
F_box_assoc_1 TIGR01640
F-box protein interaction domain; This model describes a large family of plant domains, with ...
 74-159 3.84e-10

F-box protein interaction domain; This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.


Pssm-ID: 273726 [Multi-domain]  Cd Length: 230  Bit Score: 57.37  E-value: 3.84e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15230683    74 LLTYEGKLASLASaTYVKAFISLWVLEDAERHAWSfRTFSLTFPLDDPILDTFlELTGVTEAGEFVYAPTTLqSPFHALY 153
Cdd:TIGR01640 149 LINYKGKLAVLKQ-KKDTNNFDLWVLNDAGKQEWS-KLFTVPIPPLPDLVDDN-FLSGFTDKGEIVLCCEDE-NPFYIFY 224


                  ....*.
gi 15230683   154 FDPQRN 159
Cdd:TIGR01640 225 YNVGEN 230
 
Name Accession Description Interval E-value
FBA_3 pfam08268
F-box associated domain;
74-150 6.91e-18

F-box associated domain;


Pssm-ID: 285468  Cd Length: 125  Bit Score: 75.79  E-value: 6.91e-18
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15230683    74 LLTYEGKLAsLASATYVKaFISLWVLEDAERHAWSFRTFSLTFPLDDPILDTFLELTGVTEAGEFVYA-PTTLQSPFH 150
Cdd:pfam08268  49 LINYKGKLA-VVSHTSDG-GIELWVLEDAEKHEWSKKIFVLPPSHEHLVDNTDLSVVGTTRTGEIILVlPSTLSKPFY 124
F_box_assoc_1 TIGR01640
F-box protein interaction domain; This model describes a large family of plant domains, with ...
 74-159 3.84e-10

F-box protein interaction domain; This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.


Pssm-ID: 273726 [Multi-domain]  Cd Length: 230  Bit Score: 57.37  E-value: 3.84e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15230683    74 LLTYEGKLASLASaTYVKAFISLWVLEDAERHAWSfRTFSLTFPLDDPILDTFlELTGVTEAGEFVYAPTTLqSPFHALY 153
Cdd:TIGR01640 149 LINYKGKLAVLKQ-KKDTNNFDLWVLNDAGKQEWS-KLFTVPIPPLPDLVDDN-FLSGFTDKGEIVLCCEDE-NPFYIFY 224


                  ....*.
gi 15230683   154 FDPQRN 159
Cdd:TIGR01640 225 YNVGEN 230
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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