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Conserved domains on  [gi|15227917|ref|NP_181760|]
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ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) protein [Arabidopsis thaliana]

Protein Classification

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11( domain architecture ID 10010796)

mitochondrial NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11 is an accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN02453 PLN02453
complex I subunit
 3-106 4.86e-62

complex I subunit


:

Pssm-ID: 178072  Cd Length: 105  Bit Score: 184.25  E-value: 4.86e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227917    3 STQSLTVAAKTLRNRIFSRSGSTSAG-PSRWATPGHEERPKGYFMNRTPPAPGQSRKWEDWELPCYITSFLTIVILGVGL 81
Cdd:PLN02453   1 QSAPRTAASRMLRGRQRSQLRSRGAGgPGRWFAPGHEEGPNGYLFNETPPPPGQSRKWEDWELPCYITSFLTIVILGVGL 80

                         90       100
                 ....*....|....*....|....*
gi 15227917   82 NAKPDLSIETWAHQKALERLEMEKL 106
Cdd:PLN02453  81 NAKPDTRIETWAHQKALERLEAEEL 105
 
Name Accession Description Interval E-value
PLN02453 PLN02453
complex I subunit
 3-106 4.86e-62

complex I subunit


Pssm-ID: 178072  Cd Length: 105  Bit Score: 184.25  E-value: 4.86e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227917    3 STQSLTVAAKTLRNRIFSRSGSTSAG-PSRWATPGHEERPKGYFMNRTPPAPGQSRKWEDWELPCYITSFLTIVILGVGL 81
Cdd:PLN02453   1 QSAPRTAASRMLRGRQRSQLRSRGAGgPGRWFAPGHEEGPNGYLFNETPPPPGQSRKWEDWELPCYITSFLTIVILGVGL 80

                         90       100
                 ....*....|....*....|....*
gi 15227917   82 NAKPDLSIETWAHQKALERLEMEKL 106
Cdd:PLN02453  81 NAKPDTRIETWAHQKALERLEAEEL 105
 
Name Accession Description Interval E-value
PLN02453 PLN02453
complex I subunit
 3-106 4.86e-62

complex I subunit


Pssm-ID: 178072  Cd Length: 105  Bit Score: 184.25  E-value: 4.86e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227917    3 STQSLTVAAKTLRNRIFSRSGSTSAG-PSRWATPGHEERPKGYFMNRTPPAPGQSRKWEDWELPCYITSFLTIVILGVGL 81
Cdd:PLN02453   1 QSAPRTAASRMLRGRQRSQLRSRGAGgPGRWFAPGHEEGPNGYLFNETPPPPGQSRKWEDWELPCYITSFLTIVILGVGL 80

                         90       100
                 ....*....|....*....|....*
gi 15227917   82 NAKPDLSIETWAHQKALERLEMEKL 106
Cdd:PLN02453  81 NAKPDTRIETWAHQKALERLEAEEL 105
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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