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Conserved domains on  [gi|15225671|ref|NP_181555|]
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Homeodomain-like superfamily protein [Arabidopsis thaliana]

Protein Classification

Myb family transcription factor( domain architecture ID 11806239)

Myb family transcription factor such as Oryza sativa transcription factor MYBS3, a transcription repressor that binds to 5'-TATCCA-3' elements in gene promoters

CATH:  1.20.58.1880
Gene Ontology:  GO:0003677|GO:0003700|GO:0006355
PubMed:  8882580|34200125|31084451
SCOP:  4000317

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
myb_SHAQKYF TIGR01557
myb-like DNA-binding domain, SHAQKYF class; This model describes a DNA-binding domain ...
 83-138 1.77e-22

myb-like DNA-binding domain, SHAQKYF class; This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.


:

Pssm-ID: 130620 [Multi-domain]  Cd Length: 57  Bit Score: 89.77  E-value: 1.77e-22
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 15225671    83 PRLRWTPELHICFLQAVERLGGPDRATPKLVLQLMNVKGLSIAHVKSHLQMYRSKK 138
Cdd:TIGR01557   2 PRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLKQ 57
PLN03162 super family cl26028
golden-2 like transcription factor; Provisional
 45-169 1.25e-11

golden-2 like transcription factor; Provisional


The actual alignment was detected with superfamily member PLN03162:

Pssm-ID: 178707 [Multi-domain]  Cd Length: 526  Bit Score: 66.35  E-value: 1.25e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225671   45 SGDQSPSSNSYEEESGSHHHDQ-NKKNGGSVRPynRSKTPRLRWTPELHICFLQAVERLGgPDRATPKLVLQLMNVKGLS 123
Cdd:PLN03162 199 TGDVVSASDSGECSSVDRKDNQaSPKSCKNAAP--GKKKAKVDWTPELHRRFVHAVEQLG-VEKAFPSRILELMGVQCLT 275

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 15225671  124 IAHVKSHLQMYRSKKTDEPNEGDQGFSFEHGAGYTynlsQLPMLQS 169
Cdd:PLN03162 276 RHNIASHLQKYRSHRRHLAAREAEAASWTHRRAYT----QAPWPRS 317
 
Name Accession Description Interval E-value
myb_SHAQKYF TIGR01557
myb-like DNA-binding domain, SHAQKYF class; This model describes a DNA-binding domain ...
 83-138 1.77e-22

myb-like DNA-binding domain, SHAQKYF class; This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.


Pssm-ID: 130620 [Multi-domain]  Cd Length: 57  Bit Score: 89.77  E-value: 1.77e-22
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 15225671    83 PRLRWTPELHICFLQAVERLGGPDRATPKLVLQLMNVKGLSIAHVKSHLQMYRSKK 138
Cdd:TIGR01557   2 PRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLKQ 57
PLN03162 PLN03162
golden-2 like transcription factor; Provisional
 45-169 1.25e-11

golden-2 like transcription factor; Provisional


Pssm-ID: 178707 [Multi-domain]  Cd Length: 526  Bit Score: 66.35  E-value: 1.25e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225671   45 SGDQSPSSNSYEEESGSHHHDQ-NKKNGGSVRPynRSKTPRLRWTPELHICFLQAVERLGgPDRATPKLVLQLMNVKGLS 123
Cdd:PLN03162 199 TGDVVSASDSGECSSVDRKDNQaSPKSCKNAAP--GKKKAKVDWTPELHRRFVHAVEQLG-VEKAFPSRILELMGVQCLT 275

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 15225671  124 IAHVKSHLQMYRSKKTDEPNEGDQGFSFEHGAGYTynlsQLPMLQS 169
Cdd:PLN03162 276 RHNIASHLQKYRSHRRHLAAREAEAASWTHRRAYT----QAPWPRS 317
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 84-135 3.27e-06

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 43.65  E-value: 3.27e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 15225671    84 RLRWTPELHICFLQAVERLGGpdraTPKLVLQLMNvkGLSIAHVKSHLQMYR 135
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLGN----RWKKIAKLLP--GRTDNQCKNRWQNYL 46
 
Name Accession Description Interval E-value
myb_SHAQKYF TIGR01557
myb-like DNA-binding domain, SHAQKYF class; This model describes a DNA-binding domain ...
 83-138 1.77e-22

myb-like DNA-binding domain, SHAQKYF class; This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.


Pssm-ID: 130620 [Multi-domain]  Cd Length: 57  Bit Score: 89.77  E-value: 1.77e-22
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 15225671    83 PRLRWTPELHICFLQAVERLGGPDRATPKLVLQLMNVKGLSIAHVKSHLQMYRSKK 138
Cdd:TIGR01557   2 PRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLKQ 57
PLN03162 PLN03162
golden-2 like transcription factor; Provisional
 45-169 1.25e-11

golden-2 like transcription factor; Provisional


Pssm-ID: 178707 [Multi-domain]  Cd Length: 526  Bit Score: 66.35  E-value: 1.25e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225671   45 SGDQSPSSNSYEEESGSHHHDQ-NKKNGGSVRPynRSKTPRLRWTPELHICFLQAVERLGgPDRATPKLVLQLMNVKGLS 123
Cdd:PLN03162 199 TGDVVSASDSGECSSVDRKDNQaSPKSCKNAAP--GKKKAKVDWTPELHRRFVHAVEQLG-VEKAFPSRILELMGVQCLT 275

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 15225671  124 IAHVKSHLQMYRSKKTDEPNEGDQGFSFEHGAGYTynlsQLPMLQS 169
Cdd:PLN03162 276 RHNIASHLQKYRSHRRHLAAREAEAASWTHRRAYT----QAPWPRS 317
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 84-135 3.27e-06

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 43.65  E-value: 3.27e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 15225671    84 RLRWTPELHICFLQAVERLGGpdraTPKLVLQLMNvkGLSIAHVKSHLQMYR 135
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLGN----RWKKIAKLLP--GRTDNQCKNRWQNYL 46
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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