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Conserved domains on  [gi|15226787|ref|NP_181009|]
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Mitochondrial transcription termination factor family protein [Arabidopsis thaliana]

Protein Classification

mTERF domain-containing protein( domain architecture ID 139977)

mTERF (mitochondrial transcription termination factor) domain-containing protein may function as a transcription termination factor that binds promoter DNA and regulates mitochondrial replication and transcription

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
mTERF super family cl47744
mTERF; This family contains one sequence of known function Human mitochondrial transcription ...
 62-291 4.25e-35

mTERF; This family contains one sequence of known function Human mitochondrial transcription termination factor (mTERF) the rest of the family consists of hypothetical proteins none of which have any functional information. mTERF is a multizipper protein possessing three putative leucine zippers one of which is bipartite. The protein binds DNA as a monomer. The leucine zippers are not implicated in a dimerization role as in other leucine zippers.


The actual alignment was detected with superfamily member pfam02536:

Pssm-ID: 460581 [Multi-domain]  Cd Length: 313  Bit Score: 128.87  E-value: 4.25e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15226787    62 LELMGIDSG---KALSLNP-CLCSAPLDSIQSVLHFLQSKGIYPNDLPRILGMCPKILT--------------------- 116
Cdd:pfam02536   4 LESLGVTDSqisKILTRYPpVLHADVEKDLAPKLQFLLSLGASSSDLGKILSKYPRILGfkleetmstsvdflkeigvdk 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15226787   117 SDVRTEL--YPVFMFLSN------------DLHVPENAFRRVIKKCPRLLISSVEDQLKPALF-----YLQRLGL--KDL 175
Cdd:pfam02536  84 SSIGGALrsWPSILGMRVgnniknnveylrELGVPQKLLARLLISRPQLLALDLVYLMKPKTFeekveFLKELGFsvEDV 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15226787   176 EALAYQDPILLVSSVEHTLI-----------------------------------PKLRFLESIGFSRPEAIGMILRCPA 220
Cdd:pfam02536 164 WKIIKKCPEILGLSIEKKLKkkieflkkcglseeelprvikkypqilslsertilNRVEFLLGLGFSKEEVAKMVKRFPQ 243

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 15226787   221 LFTFSIENnFKPKLDYFMSEIKGKLENLKEFPQYFAFSLEKRIKPRHLESMERGLELPLSLMLKSTDEEFE 291
Cdd:pfam02536 244 LLGLSIEV-LKPKLEFLVKEMKWPLKEVVEYPRVFGYSLEKRIKPRIKALVSKGLECSLSWMLACSDERFL 313
 
Name Accession Description Interval E-value
mTERF pfam02536
mTERF; This family contains one sequence of known function Human mitochondrial transcription ...
 62-291 4.25e-35

mTERF; This family contains one sequence of known function Human mitochondrial transcription termination factor (mTERF) the rest of the family consists of hypothetical proteins none of which have any functional information. mTERF is a multizipper protein possessing three putative leucine zippers one of which is bipartite. The protein binds DNA as a monomer. The leucine zippers are not implicated in a dimerization role as in other leucine zippers.


Pssm-ID: 460581 [Multi-domain]  Cd Length: 313  Bit Score: 128.87  E-value: 4.25e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15226787    62 LELMGIDSG---KALSLNP-CLCSAPLDSIQSVLHFLQSKGIYPNDLPRILGMCPKILT--------------------- 116
Cdd:pfam02536   4 LESLGVTDSqisKILTRYPpVLHADVEKDLAPKLQFLLSLGASSSDLGKILSKYPRILGfkleetmstsvdflkeigvdk 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15226787   117 SDVRTEL--YPVFMFLSN------------DLHVPENAFRRVIKKCPRLLISSVEDQLKPALF-----YLQRLGL--KDL 175
Cdd:pfam02536  84 SSIGGALrsWPSILGMRVgnniknnveylrELGVPQKLLARLLISRPQLLALDLVYLMKPKTFeekveFLKELGFsvEDV 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15226787   176 EALAYQDPILLVSSVEHTLI-----------------------------------PKLRFLESIGFSRPEAIGMILRCPA 220
Cdd:pfam02536 164 WKIIKKCPEILGLSIEKKLKkkieflkkcglseeelprvikkypqilslsertilNRVEFLLGLGFSKEEVAKMVKRFPQ 243

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 15226787   221 LFTFSIENnFKPKLDYFMSEIKGKLENLKEFPQYFAFSLEKRIKPRHLESMERGLELPLSLMLKSTDEEFE 291
Cdd:pfam02536 244 LLGLSIEV-LKPKLEFLVKEMKWPLKEVVEYPRVFGYSLEKRIKPRIKALVSKGLECSLSWMLACSDERFL 313
PLN03196 PLN03196
MOC1-like protein; Provisional
 85-295 1.46e-24

MOC1-like protein; Provisional


Pssm-ID: 215628 [Multi-domain]  Cd Length: 487  Bit Score: 102.87  E-value: 1.46e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15226787   85 DSIQSVLHFLQSKGIYPNDLPRILGMCPKILTSDVRTELYPVFMFLSNDLHVPENAFRRVIKKCPRLLISSVEDQLKPAL 164
Cdd:PLN03196 266 ETVKPNVECLLEFGVRKEALPSVIAQYPDILGLDLKAKLAEQQYWLTSKLKIDPEDFGRVIEKLPQIVSLNRNVALKHVE 345

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15226787  165 FYLQRlglkdlealayqdpillvssvehtlipklrflesiGFSRPEAIGMILRCPALFTFSIENnFKPKLDYFMSEIKGK 244
Cdd:PLN03196 346 FLRGR-----------------------------------GFSAQDVAKMVVRCPQILALNLEI-MKPSLEFFKKEMKRP 389

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 15226787  245 LENLKEFPQYFAFSLEKRIKPRHLESMERGLELPLSLMLKSTDEEFEQLLT 295
Cdd:PLN03196 390 LKELVEFPAYFTYGLESRIKPRYERVAKKGIKCSLAWFLNCSDDKFEQRMS 440
 
Name Accession Description Interval E-value
mTERF pfam02536
mTERF; This family contains one sequence of known function Human mitochondrial transcription ...
 62-291 4.25e-35

mTERF; This family contains one sequence of known function Human mitochondrial transcription termination factor (mTERF) the rest of the family consists of hypothetical proteins none of which have any functional information. mTERF is a multizipper protein possessing three putative leucine zippers one of which is bipartite. The protein binds DNA as a monomer. The leucine zippers are not implicated in a dimerization role as in other leucine zippers.


Pssm-ID: 460581 [Multi-domain]  Cd Length: 313  Bit Score: 128.87  E-value: 4.25e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15226787    62 LELMGIDSG---KALSLNP-CLCSAPLDSIQSVLHFLQSKGIYPNDLPRILGMCPKILT--------------------- 116
Cdd:pfam02536   4 LESLGVTDSqisKILTRYPpVLHADVEKDLAPKLQFLLSLGASSSDLGKILSKYPRILGfkleetmstsvdflkeigvdk 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15226787   117 SDVRTEL--YPVFMFLSN------------DLHVPENAFRRVIKKCPRLLISSVEDQLKPALF-----YLQRLGL--KDL 175
Cdd:pfam02536  84 SSIGGALrsWPSILGMRVgnniknnveylrELGVPQKLLARLLISRPQLLALDLVYLMKPKTFeekveFLKELGFsvEDV 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15226787   176 EALAYQDPILLVSSVEHTLI-----------------------------------PKLRFLESIGFSRPEAIGMILRCPA 220
Cdd:pfam02536 164 WKIIKKCPEILGLSIEKKLKkkieflkkcglseeelprvikkypqilslsertilNRVEFLLGLGFSKEEVAKMVKRFPQ 243

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 15226787   221 LFTFSIENnFKPKLDYFMSEIKGKLENLKEFPQYFAFSLEKRIKPRHLESMERGLELPLSLMLKSTDEEFE 291
Cdd:pfam02536 244 LLGLSIEV-LKPKLEFLVKEMKWPLKEVVEYPRVFGYSLEKRIKPRIKALVSKGLECSLSWMLACSDERFL 313
PLN03196 PLN03196
MOC1-like protein; Provisional
 85-295 1.46e-24

MOC1-like protein; Provisional


Pssm-ID: 215628 [Multi-domain]  Cd Length: 487  Bit Score: 102.87  E-value: 1.46e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15226787   85 DSIQSVLHFLQSKGIYPNDLPRILGMCPKILTSDVRTELYPVFMFLSNDLHVPENAFRRVIKKCPRLLISSVEDQLKPAL 164
Cdd:PLN03196 266 ETVKPNVECLLEFGVRKEALPSVIAQYPDILGLDLKAKLAEQQYWLTSKLKIDPEDFGRVIEKLPQIVSLNRNVALKHVE 345

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15226787  165 FYLQRlglkdlealayqdpillvssvehtlipklrflesiGFSRPEAIGMILRCPALFTFSIENnFKPKLDYFMSEIKGK 244
Cdd:PLN03196 346 FLRGR-----------------------------------GFSAQDVAKMVVRCPQILALNLEI-MKPSLEFFKKEMKRP 389

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 15226787  245 LENLKEFPQYFAFSLEKRIKPRHLESMERGLELPLSLMLKSTDEEFEQLLT 295
Cdd:PLN03196 390 LKELVEFPAYFTYGLESRIKPRYERVAKKGIKCSLAWFLNCSDDKFEQRMS 440
mTERF pfam02536
mTERF; This family contains one sequence of known function Human mitochondrial transcription ...
 166-266 2.10e-07

mTERF; This family contains one sequence of known function Human mitochondrial transcription termination factor (mTERF) the rest of the family consists of hypothetical proteins none of which have any functional information. mTERF is a multizipper protein possessing three putative leucine zippers one of which is bipartite. The protein binds DNA as a monomer. The leucine zippers are not implicated in a dimerization role as in other leucine zippers.


Pssm-ID: 460581 [Multi-domain]  Cd Length: 313  Bit Score: 51.45  E-value: 2.10e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15226787   166 YLQRLGLKD--LEALAYQDPILLVSSVEHTLIPKLRFLESIGFSRPEAIGMILRCPALFTFSIENNFKPKLDYFMSE--- 240
Cdd:pfam02536   3 LLESLGVTDsqISKILTRYPPVLHADVEKDLAPKLQFLLSLGASSSDLGKILSKYPRILGFKLEETMSTSVDFLKEIgvd 82

                          90       100
                  ....*....|....*....|....*.
gi 15226787   241 IKGKLENLKEFPQYFAFSLEKRIKPR 266
Cdd:pfam02536  83 KSSIGGALRSWPSILGMRVGNNIKNN 108
PLN03196 PLN03196
MOC1-like protein; Provisional
 90-265 4.20e-05

MOC1-like protein; Provisional


Pssm-ID: 215628 [Multi-domain]  Cd Length: 487  Bit Score: 44.70  E-value: 4.20e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15226787   90 VLHFLQSKGIYPN-----DLPrilgmcpkiLTSDVRTELypvFMFLSN-DLHVPEnafrrvIKKCPRLLISSVEDQLKPA 163
Cdd:PLN03196  66 VLDFLRGIGIDPDeldglELP---------STVDVMRER---VEFLHKlGLTIED------INEYPLVLGCSVKKNMIPV 127

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15226787  164 LFYLQRLGLK--DLEALAYQDPILLVSSVEHTLIPKLRFLE------------------------------------SIG 205
Cdd:PLN03196 128 LDYLEKLGVTrsSLPELLRRYPQVLHASVVVDLAPVVKYLQgldvkrqdiprvlerypellgfklegtmstsvaylvSIG 207

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 15226787  206 FSRPEAIGMILRCPALFTFSIENNFKPKLDYFMS-----EIKGKLenLKEFPQYFAFSLEKRIKP 265
Cdd:PLN03196 208 VAPRDIGPMLTRFPEILGMRVGNNIKPKVDYLESlglprLAVARI--LEKRPYILGFDLEETVKP 270
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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