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Conserved domains on  [gi|15225686|ref|NP_180804|]
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Calcium-binding tetratricopeptide family protein [Arabidopsis thaliana]

Protein Classification

EF-hand domain-containing protein; tetratricopeptide repeat protein( domain architecture ID 12144789)

EF-hand (EFh) domain-containing protein may be involved in binding intracellular calcium and in calcium signal transduction| tetratricopeptide repeat (TPR) protein may adopt a right-handed helical structure with an amphipathic channel and may function as an interaction scaffold in the formation of multi-protein complexes

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
304-469 6.91e-36

Tetratricopeptide (TPR) repeat [General function prediction only];


:

Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 136.29  E-value: 6.91e-36
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686 304 LPQIYVNLGISLEGEGMVLSACEYYREAAILCPTHYRALKLLGSALFGVGEYRAAVKALEEAIYLKPDYADAHCDLASSL 383
Cdd:COG0457   7 DAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLAL 86

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686 384 HAMGEDERAIEVFQRAIDLKPGHVDALYNLGGLYMDLGRFQRASEMYTRVLAVWPNHWRAQLNKAVSLLGAGETEEAKRA 463
Cdd:COG0457  87 QALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALEL 166


                ....*.
gi 15225686 464 LKEALK 469
Cdd:COG0457 167 LEKLEA 172
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 230-375 8.51e-08

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


:

Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 51.55  E-value: 8.51e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686 230 DGHMAIGKVLYEHQLFKEALVSFKRACELQPTDVRPHFKAGNCLYVLGKYKESKDEFLLALEAAesggnqwayllpqiyv 309
Cdd:COG4235  18 EGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD---------------- 81

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15225686 310 nlgislegegmvlsaceyyreaailcPTHYRALKLLGSALFGVGEYRAAVKALEEAIYLKPDYADA 375
Cdd:COG4235  82 --------------------------PDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPA 121
ZZ super family cl00295
Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ...
 730-763 2.02e-04

Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins.


The actual alignment was detected with superfamily member cd02249:

Pssm-ID: 412288 [Multi-domain]  Cd Length: 46  Bit Score: 39.73  E-value: 2.02e-04
                        10        20        30
                ....*....|....*....|....*....|....*
gi 15225686 730 VCSVCRYPIIGSRFK-EVKTGFSLCNQCYSEGKIP 763
Cdd:cd02249   2 SCDGCLKPIVGVRYHcLVCEDFDLCSSCYAKGKKG 36
 
Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
304-469 6.91e-36

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 136.29  E-value: 6.91e-36
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686 304 LPQIYVNLGISLEGEGMVLSACEYYREAAILCPTHYRALKLLGSALFGVGEYRAAVKALEEAIYLKPDYADAHCDLASSL 383
Cdd:COG0457   7 DAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLAL 86

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686 384 HAMGEDERAIEVFQRAIDLKPGHVDALYNLGGLYMDLGRFQRASEMYTRVLAVWPNHWRAQLNKAVSLLGAGETEEAKRA 463
Cdd:COG0457  87 QALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALEL 166


                ....*.
gi 15225686 464 LKEALK 469
Cdd:COG0457 167 LEKLEA 172
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 219-472 1.65e-14

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 77.82  E-value: 1.65e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686   219 ADGARSREEafdgHMAIGKVLYEHQLFKEALVSFKRACELQPTDVRPHFKAGNCLYVLGKYKESKDEFLLALEAAESGgN 298
Cdd:TIGR02917  16 ACGDQSPEE----LIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPK-N 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686   299 QWAYLLPQIYVNLG-----ISLEGEGMVLSACEYyreAAILcpthyralKLLGSALFGVGEYRAAVKALEEAIYLKPDYA 373
Cdd:TIGR02917  91 QVLPLLARAYLLQGkfqqvLDELPGKTLLDDEGA---AELL--------ALRGLAYLGLGQLELAQKSYEQALAIDPRSL 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686   374 DAHCDLASSLHAMGEDERAIEVFQRAIDLKPGHVDALYNLGGLYMDLGRFQRASEMYTRVLAVWPNHWRAQLNKAVSLLG 453
Cdd:TIGR02917 160 YAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIE 239

                         250
                  ....*....|....*....
gi 15225686   454 AGETEEAKRALKEALKMTN 472
Cdd:TIGR02917 240 AGEFEEAEKHADALLKKAP 258
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 329-474 1.62e-08

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 58.39  E-value: 1.62e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686  329 REAAILCPTHYRALKL---LGSALFGVGEYRAAVkALEEAIY------LKPDYAD---AHCDLASSLHAMGEDERAIEVF 396
Cdd:NF040586 465 RRVLGLGEDHPHTLMTaggLGADLRALGRFREAL-ELDEETLerhrrvFGEDHPRtlrAANNLAVSLRLLGDYREALELD 543

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686  397 QRAIDLK-----PGHVDALY---NLGGLYMDLGRFQRASEMYTRVLAV------WPNHW---RAQLNKAVSLLGAGETEE 459
Cdd:NF040586 544 REVLRRRrrvlgPDHPRTLLsanNLARDLRELGRYAEALDLLEEALERyrevlgGPDHPdtlRAAKSLAVALRRAGRLEE 623

                        170
                 ....*....|....*
gi 15225686  460 AKRALKEALKMTNRV 474
Cdd:NF040586 624 ALELAEDTYERYRRR 638
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 230-375 8.51e-08

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 51.55  E-value: 8.51e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686 230 DGHMAIGKVLYEHQLFKEALVSFKRACELQPTDVRPHFKAGNCLYVLGKYKESKDEFLLALEAAesggnqwayllpqiyv 309
Cdd:COG4235  18 EGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD---------------- 81

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15225686 310 nlgislegegmvlsaceyyreaailcPTHYRALKLLGSALFGVGEYRAAVKALEEAIYLKPDYADA 375
Cdd:COG4235  82 --------------------------PDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPA 121
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 344-406 1.04e-06

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 46.56  E-value: 1.04e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15225686   344 LLGSALFGVGEYRAAVKALEEAI---YLKPDYADAHCDLASSLHAMGEDERAIEVFQRAIDLKPGH 406
Cdd:pfam13432   2 ALARAALRAGDYDDAAAALEAALarfPESPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGD 67
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 353-439 2.44e-06

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 48.51  E-value: 2.44e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686  353 GEYRAAVKALEEAIYLKPDYADAhcdlASSLHAM-------GEDERAIEVFQRAIDLKPGHVDALYNLGGLYMDLGR--- 422
Cdd:PRK02603  49 GEYAEALENYEEALKLEEDPNDR----SYILYNMgiiyasnGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEkae 124

                         90       100
                 ....*....|....*....|....*...
gi 15225686  423 -----------FQRASEMYTRVLAVWPN 439
Cdd:PRK02603 125 eagdqdeaealFDKAAEYWKQAIRLAPN 152
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 245-437 3.26e-06

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 49.93  E-value: 3.26e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686 245 FKEALVSFKRACELQPTDVRPHFKAGNCLYVLGKYKESKDEFLLALEAAESGGnqwayllPQIYVNLGISLEGEgmvlSA 324
Cdd:cd24142  16 FELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGG-------YEKYLYLGQLSGGE----EA 84

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686 325 CEYYReaailcpthyRALKLLGSALFGVGEYRAAVKalEEAIYLKPDYADAHCdlasslhAMGE------------DERA 392
Cdd:cd24142  85 LQYYE----------KGIEILEEELQALQAASAEAE--EEAEELKRKLSSALC-------ALAEiymtdlcdepdaEQRC 145

                       170       180       190       200
                ....*....|....*....|....*....|....*....|....*
gi 15225686 393 IEVFQRAIDLKPGHVDALYNLGGLYMDLGRFQRASEMYTRVLAVW 437
Cdd:cd24142 146 EELITKALELDPTNPEALQTLASLRISQQRPDEAKEALRRSLELW 190
BTAD smart01043
Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. ...
 321-402 1.54e-05

Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. This region of AFSR along with the C terminal region is capable of independently directing actinorhodin production. This family contains TPR repeats.


Pssm-ID: 198111 [Multi-domain]  Cd Length: 145  Bit Score: 45.37  E-value: 1.54e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686    321 VLSACEYYREAAIlcpthyRALKLLGSALFGVGEYRAAVKALEEAIYLKPDYADAHCDLASSLHAMGEDERAIEVFQRAI 400
Cdd:smart01043  49 AEAERERLRELRL------EALEALAEALLALGRHEEALALLERLLALDPLRERLHRLLMRALYRAGRRAEALRAYRRLR 122


                   ..
gi 15225686    401 DL 402
Cdd:smart01043 123 RL 124
LcrH_SycD TIGR02552
type III secretion low calcium response chaperone LcrH/SycD; Genes in this family are found in ...
 229-291 1.74e-04

type III secretion low calcium response chaperone LcrH/SycD; Genes in this family are found in type III secretion operons. LcrH, from Yersinia is believed to have a regulatory function in the low-calcium response of the secretion system. The same protein is also known as SycD (SYC = Specific Yop Chaperone) for its chaperone role. In Pseudomonas, where the homolog is known as PcrH, the chaperone role has been demonstrated and the regulatory role appears to be absent. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.


Pssm-ID: 274197 [Multi-domain]  Cd Length: 135  Bit Score: 42.28  E-value: 1.74e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15225686   229 FDGHMAIGKVLYEHQLFKEALVSFKRACELQPTDVRPHFKAGNCLYVLGKYKESKDEFLLALE 291
Cdd:TIGR02552  51 SRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIE 113
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 273-474 2.00e-04

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 44.91  E-value: 2.00e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686  273 LYVLGKYKESKD---EFLLALEAAESGGNQWAYLLPQiyVNLGISLEG-----EGMVLSACEYYREAAILCPTHYRALKL 344
Cdd:NF040586 572 LRELGRYAEALDlleEALERYREVLGGPDHPDTLRAA--KSLAVALRRagrleEALELAEDTYERYRRRFGPDHPDTLAA 649

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686  345 ---LGSALFGVGEYRAAVKALEEAI--YLKpDYADAH-----C--DLASSLHAMGEDERAIEVFQRAID-----LKPGH- 406
Cdd:NF040586 650 alsLANDLRALGDADEARELAREVLdrYRR-VLGEDHpftlaCrnNLAVLLRALGDPEEARELAEAALEglrerLGPDHp 728

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686  407 --VDALYNLGGLYMDLGRFQRAS---------EMYTRVLAVWPNH---WRAQLNKAVSLLGAGETEEAKRALKEALKMTN 472
Cdd:NF040586 729 ytLAAAVNLANDLAALGDLDAALgeealerlrRLLGEDLRAGPDHpdtLACAANLALDLRATGRTEEAEELRADTLARLR 808


                 ..
gi 15225686  473 RV 474
Cdd:NF040586 809 RV 810
ZZ cd02249
Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ...
 730-763 2.02e-04

Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins.


Pssm-ID: 239069 [Multi-domain]  Cd Length: 46  Bit Score: 39.73  E-value: 2.02e-04
                        10        20        30
                ....*....|....*....|....*....|....*
gi 15225686 730 VCSVCRYPIIGSRFK-EVKTGFSLCNQCYSEGKIP 763
Cdd:cd02249   2 SCDGCLKPIVGVRYHcLVCEDFDLCSSCYAKGKKG 36
TPR_11 pfam13414
TPR repeat;
236-277 8.57e-04

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 37.45  E-value: 8.57e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 15225686   236 GKVLYEHQLFKEALVSFKRACELQPTDVRPHFKAGNCLYVLG 277
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
 
Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
304-469 6.91e-36

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 136.29  E-value: 6.91e-36
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686 304 LPQIYVNLGISLEGEGMVLSACEYYREAAILCPTHYRALKLLGSALFGVGEYRAAVKALEEAIYLKPDYADAHCDLASSL 383
Cdd:COG0457   7 DAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLAL 86

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686 384 HAMGEDERAIEVFQRAIDLKPGHVDALYNLGGLYMDLGRFQRASEMYTRVLAVWPNHWRAQLNKAVSLLGAGETEEAKRA 463
Cdd:COG0457  87 QALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALEL 166


                ....*.
gi 15225686 464 LKEALK 469
Cdd:COG0457 167 LEKLEA 172
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
257-468 5.00e-33

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 127.82  E-value: 5.00e-33
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686 257 ELQPTDVRPHFKAGNCLYVLGKYKESKDEFLLALEAAESggnqwaylLPQIYVNLGISLEGEGMVLSACEYYREAAILCP 336
Cdd:COG0457   2 ELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPD--------DAEALYNLGLAYLRLGRYEEALADYEQALELDP 73

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686 337 THYRALKLLGSALFGVGEYRAAVKALEEAIYLKPDYADAHCDLASSLHAMGEDERAIEVFQRAIDLKPGHVDALYNLGGL 416
Cdd:COG0457  74 DDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIA 153

                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|..
gi 15225686 417 YMDLGRFQRASEMYTRVLAVWPNHWRAQLNKAVSLLGAGETEEAKRALKEAL 468
Cdd:COG0457 154 LEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQ 205
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
334-470 3.76e-32

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 125.50  E-value: 3.76e-32
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686 334 LCPTHYRALKLLGSALFGVGEYRAAVKALEEAIYLKPDYADAHCDLASSLHAMGEDERAIEVFQRAIDLKPGHVDALYNL 413
Cdd:COG0457   3 LDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNL 82

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*..
gi 15225686 414 GGLYMDLGRFQRASEMYTRVLAVWPNHWRAQLNKAVSLLGAGETEEAKRALKEALKM 470
Cdd:COG0457  83 GLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALEL 139
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 231-482 9.03e-31

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 122.15  E-value: 9.03e-31
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686 231 GHMAIGKVLYEHQLFKEALVSFKRACELQPTDVRPHFKAGNCLYVLGKYKESKDEFLLALEAAESggnqwaylLPQIYVN 310
Cdd:COG2956  10 GWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPD--------RAEALLE 81

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686 311 LGISLEGEGMVLSACEYYREAAILCPTHYRALKLLGSALFGVGEYRAAVKALEEAIYLKPDYADAHCDLASSLHAMGEDE 390
Cdd:COG2956  82 LAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYD 161

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686 391 RAIEVFQRAIDLKPGHVDALYNLGGLYMDLGRFQRASEMYTRVLAVWPNHWRAQLNKAVSLLGAGETEEAKRALKEALKM 470
Cdd:COG2956 162 EAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALEL 241

                       250
                ....*....|..
gi 15225686 471 TNRVELHDAVSH 482
Cdd:COG2956 242 DPSDDLLLALAD 253
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 287-470 1.83e-28

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 121.64  E-value: 1.83e-28
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686 287 LLALEAAESGGNQWAYLLPQIYVNLGISLEGEGMVLSACEYYREAAILCPTHYRALKLLGSALFGVGEYRAAVKALEEAI 366
Cdd:COG3914  26 LALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRAL 105

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686 367 YLKPDYADAHCDLASSLHAMGEDERAIEVFQRAIDLKPGHVDALYNLGGLYMDLGRFQRASEMYTRVLAVWPNHWRAQLN 446
Cdd:COG3914 106 ALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNN 185

                       170       180
                ....*....|....*....|....
gi 15225686 447 KAVSLLGAGETEEAKRALKEALKM 470
Cdd:COG3914 186 LGNALQDLGRLEEAIAAYRRALEL 209
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 287-472 2.56e-28

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 121.25  E-value: 2.56e-28
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686 287 LLALEAAESGGNQWAYLLPQIYVNLGISLEGEGMVLSACEYYREAAILCPTHYRALKLLGSALFGVGEYRAAVKALEEAI 366
Cdd:COG3914  60 LALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRAL 139

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686 367 YLKPDYADAHCDLASSLHAMGEDERAIEVFQRAIDLKPGHVDALYNLGGLYMDLGRFQRASEMYTRVLAVWPNHWRAQLN 446
Cdd:COG3914 140 ALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSN 219

                       170       180
                ....*....|....*....|....*.
gi 15225686 447 KAVSLLGAGETEEAKRALKEALKMTN 472
Cdd:COG3914 220 LLFALRQACDWEVYDRFEELLAALAR 245
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 227-469 5.31e-26

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 108.28  E-value: 5.31e-26
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686 227 EAFDGHMAIGKVLYEHQLFKEALVSFKRACELQPTDVRPHFKAGNCLYVLGKYKESKDEFLLALEAAESGgnqwayllPQ 306
Cdd:COG2956  40 ETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDD--------AE 111

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686 307 IYVNLGISLEGEGMVLSACEYYREAAILCPTHYRALKLLGSALFGVGEYRAAVKALEEAIYLKPDYADAHCDLASSLHAM 386
Cdd:COG2956 112 ALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQ 191

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686 387 GEDERAIEVFQRAIDLKPGHVDALYNLGGLYMDLGRFQRASEMYTRVLAVWPNHwRAQLNKAVSLLGAGETEEAKRALKE 466
Cdd:COG2956 192 GDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSD-DLLLALADLLERKEGLEAALALLER 270


                ...
gi 15225686 467 ALK 469
Cdd:COG2956 271 QLR 273
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
230-468 1.11e-25

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 106.63  E-value: 1.11e-25
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686 230 DGHMAIGKVLYEHQLFKEALVSFKRACELQPTDVRPHFKAGNCLYVLGKYKESKDEFLLALEAAESggnqwaylLPQIYV 309
Cdd:COG0457   9 EAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPD--------DAEALN 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686 310 NLGISLEGEGMVLSACEYYREAAILCPTHYRALKLLGSALFGVGEYRAAVKALEEAIYLKPDYADAHCDLASSLHAMGED 389
Cdd:COG0457  81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160

                       170       180       190       200       210       220       230
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15225686 390 ERAIEVFQRAIDLKPGHVDALYNLGGLYMDLGRFQRASEMYTRVLAVWPNHWRAQLNKAVSLLGAGETEEAKRALKEAL 468
Cdd:COG0457 161 EEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALA 239
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 340-470 1.65e-24

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 99.88  E-value: 1.65e-24
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686 340 RALKLLGSALFGVGEYRAAVKALEEAIYLKPDYADAHCDLASSLHAMGEDERAIEVFQRAIDLKPGHVDALYNLGGLYMD 419
Cdd:COG4783   5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLK 84

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|.
gi 15225686 420 LGRFQRASEMYTRVLAVWPNHWRAQLNKAVSLLGAGETEEAKRALKEALKM 470
Cdd:COG4783  85 AGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALEL 135
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 336-449 1.96e-24

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 99.31  E-value: 1.96e-24
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686 336 PTHYRALKLLGSALFGVGEYRAAVKALEEAIYLKPDYADAHCDLASSLHAMGEDERAIEVFQRAIDLKPGHVDALYNLGG 415
Cdd:COG4235  14 PNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGL 93

                        90       100       110
                ....*....|....*....|....*....|....*
gi 15225686 416 LYMDLGRFQRASEMYTRVLAVWP-NHWRAQLNKAV 449
Cdd:COG4235  94 AAFQQGDYAEAIAAWQKLLALLPaDAPARLLEASI 128
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 357-470 1.24e-22

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 94.30  E-value: 1.24e-22
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686 357 AAVKALEEAIYLKPDYADAHCDLASSLHAMGEDERAIEVFQRAIDLKPGHVDALYNLGGLYMDLGRFQRASEMYTRVLAV 436
Cdd:COG4235   1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                        90       100       110
                ....*....|....*....|....*....|....
gi 15225686 437 WPNHWRAQLNKAVSLLGAGETEEAKRALKEALKM 470
Cdd:COG4235  81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLAL 114
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 306-440 1.68e-22

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 94.10  E-value: 1.68e-22
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686 306 QIYVNLGISLEGEGMVLSACEYYREAAILCPTHYRALKLLGSALFGVGEYRAAVKALEEAIYLKPDYADAHCDLASSLHA 385
Cdd:COG4783   5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLK 84

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*
gi 15225686 386 MGEDERAIEVFQRAIDLKPGHVDALYNLGGLYMDLGRFQRASEMYTRVLAVWPNH 440
Cdd:COG4783  85 AGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 226-435 3.50e-22

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 97.11  E-value: 3.50e-22
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686 226 EEAFDGHMAIGKVLYEHQLFKEALVSFKRACELQPTDVRPHFKAGNCLYVLGKYKESKDeflLALEAAESGGNQwayllP 305
Cdd:COG2956  73 PDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIE---VLERLLKLGPEN-----A 144

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686 306 QIYVNLGISLEGEGMVLSACEYYREAAILCPTHYRALKLLGSALFGVGEYRAAVKALEEAIYLKPDYADAHCDLASSLHA 385
Cdd:COG2956 145 HAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEK 224

                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|
gi 15225686 386 MGEDERAIEVFQRAIDLKPGhVDALYNLGGLYMDLGRFQRASEMYTRVLA 435
Cdd:COG2956 225 LGDPEEALELLRKALELDPS-DDLLLALADLLERKEGLEAALALLERQLR 273
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
305-469 7.10e-21

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 91.90  E-value: 7.10e-21
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686 305 PQIYVNLGISLEGEGMVLSACEYYREA------AILCPTHYRALKLLGSALFGVGEYRAAVKALEEAIYLKPDYADAHCD 378
Cdd:COG4785  33 AVLALAIALADLALALAAAALAAAALAaeridrALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNN 112

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686 379 LASSLHAMGEDERAIEVFQRAIDLKPGHVDALYNLGGLYMDLGRFQRASEMYTRVLAVWPN-----------HWRAQLNK 447
Cdd:COG4785 113 RGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNdperalwlylaERKLDPEK 192

                       170       180       190
                ....*....|....*....|....*....|.
gi 15225686 448 AVSLLGA---------GETEEAKRALKEALK 469
Cdd:COG4785 193 ALALLLEdwatayllqGDTEEARELFKLALA 223
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 344-471 1.06e-20

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 92.87  E-value: 1.06e-20
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686 344 LLGSALFGVGEYRA------------AVKALEEAIYLKPDYADAHCDLASSLHAMGEDERAIEVFQRAIDLKPGHVDALY 411
Cdd:COG2956   1 LLLPVAAALGWYFKglnyllngqpdkAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALL 80

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686 412 NLGGLYMDLGRFQRASEMYTRVLAVWPNHWRAQLNKAVSLLGAGETEEAKRALKEALKMT 471
Cdd:COG2956  81 ELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLG 140
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
348-442 1.77e-19

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 83.68  E-value: 1.77e-19
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686 348 ALFGVGEYRAAVKALEEAIYLKPDYADAHCDLASSLHAMGEDERAIEvFQRAIDLKPGHVDALYNLGGLYMDLGRFQRAS 427
Cdd:COG3063   1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                        90
                ....*....|....*
gi 15225686 428 EMYTRVLAVWPNHWR 442
Cdd:COG3063  80 AYLERALELDPSALR 94
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 327-469 4.98e-19

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 84.63  E-value: 4.98e-19
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686 327 YYREAAILCPTHYRALKLLGSALFGVGEYRAAVKALEEAIYLKPDYADAHCDLASSLHAMGEDERAIEVFQRAIDLKPGH 406
Cdd:COG5010   8 DRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNN 87

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15225686 407 VDALYNLGGLYMDLGRFQRASEMYTRVLAVWPNHWRAQLNKAVSLLGAGETEEAKRALKEALK 469
Cdd:COG5010  88 PELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALG 150
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 287-438 1.31e-18

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 83.47  E-value: 1.31e-18
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686 287 LLALEAAESGGNQWAYLLPQIYVNLGISLEGEGMVLSACEYYREAAILCPTHYRALKLLGSALFGVGEYRAAVKALEEAI 366
Cdd:COG5010   2 RALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQAL 81

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15225686 367 YLKPDYADAHCDLASSLHAMGEDERAIEVFQRAIDLKPGHVDALYNLGGLYMDLGRFQRASEMYTRVLAVWP 438
Cdd:COG5010  82 QLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 262-406 1.95e-17

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 79.47  E-value: 1.95e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686 262 DVRPHFKAGNCLYVLGKYKESKDEFLLALEAaeSGGNQWAY-LLPQIYVNLGISLEgegmvlsACEYYREAAILCPTHYR 340
Cdd:COG4783   3 CAEALYALAQALLLAGDYDEAEALLEKALEL--DPDNPEAFaLLGEILLQLGDLDE-------AIVLLHEALELDPDEPE 73

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15225686 341 ALKLLGSALFGVGEYRAAVKALEEAIYLKPDYADAHCDLASSLHAMGEDERAIEVFQRAIDLKPGH 406
Cdd:COG4783  74 ARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
383-471 2.63e-17

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 77.52  E-value: 2.63e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686 383 LHAMGEDERAIEVFQRAIDLKPGHVDALYNLGGLYMDLGRFQRAsEMYTRVLAVWPNHWRAQLNKAVSLLGAGETEEAKR 462
Cdd:COG3063   2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEA-IALEKALKLDPNNAEALLNLAELLLELGDYDEALA 80


                ....*....
gi 15225686 463 ALKEALKMT 471
Cdd:COG3063  81 YLERALELD 89
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 373-470 9.52e-17

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 77.54  E-value: 9.52e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686 373 ADAHCDLASSLHAMGEDERAIEVFQRAIDLKPGHVDALYNLGGLYMDLGRFQRASEMYTRVLAVWPNHWRAQLNKAVSLL 452
Cdd:COG4783   4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83

                        90
                ....*....|....*...
gi 15225686 453 GAGETEEAKRALKEALKM 470
Cdd:COG4783  84 KAGDYDEALALLEKALKL 101
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 219-472 1.65e-14

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 77.82  E-value: 1.65e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686   219 ADGARSREEafdgHMAIGKVLYEHQLFKEALVSFKRACELQPTDVRPHFKAGNCLYVLGKYKESKDEFLLALEAAESGgN 298
Cdd:TIGR02917  16 ACGDQSPEE----LIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPK-N 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686   299 QWAYLLPQIYVNLG-----ISLEGEGMVLSACEYyreAAILcpthyralKLLGSALFGVGEYRAAVKALEEAIYLKPDYA 373
Cdd:TIGR02917  91 QVLPLLARAYLLQGkfqqvLDELPGKTLLDDEGA---AELL--------ALRGLAYLGLGQLELAQKSYEQALAIDPRSL 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686   374 DAHCDLASSLHAMGEDERAIEVFQRAIDLKPGHVDALYNLGGLYMDLGRFQRASEMYTRVLAVWPNHWRAQLNKAVSLLG 453
Cdd:TIGR02917 160 YAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIE 239

                         250
                  ....*....|....*....
gi 15225686   454 AGETEEAKRALKEALKMTN 472
Cdd:TIGR02917 240 AGEFEEAEKHADALLKKAP 258
type_IV_pilW TIGR02521
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ...
 345-469 1.95e-14

type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.


Pssm-ID: 131573 [Multi-domain]  Cd Length: 234  Bit Score: 73.53  E-value: 1.95e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686   345 LGSALFGVGEYRAAVKALEEAIYLKPDYADAHCDLASSLHAMGEDERAIEVFQRAIDLKPGHVDALYNLGGLYMDLGRFQ 424
Cdd:TIGR02521  37 LALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYE 116

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 15225686   425 RASEMYTRVLA--VWPNHWRAQLNKAVSLLGAGETEEAKRALKEALK 469
Cdd:TIGR02521 117 QAMQQFEQAIEdpLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQ 163
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 273-404 7.04e-14

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 69.99  E-value: 7.04e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686 273 LYVLGKYKESKDEFLLALEAAESGGNQWAYLLPQIYVNLGISLEGEGMVLSACEYYREAAILCPTHYRALKLLGSALFGV 352
Cdd:COG5010  22 TLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRS 101

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|..
gi 15225686 353 GEYRAAVKALEEAIYLKPDYADAHCDLASSLHAMGEDERAIEVFQRAIDLKP 404
Cdd:COG5010 102 GDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 230-482 1.69e-13

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 74.35  E-value: 1.69e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686   230 DGHMAIGKVLYEHQLFKEALVSFKRACELQPTDVRPHFKAGNCLYVLGKYKESkDEFLLALEAAESGGNQWAYLLPQIYV 309
Cdd:TIGR02917 194 DALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEA-EKHADALLKKAPNSPLAHYLKALVDF 272

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686   310 NlgislegEGMVLSACEYYREAAILCPTHYRALKLLGSALFGVGEYRAAVKALEEAIYLKPDYADAHCDLASSLHAMGED 389
Cdd:TIGR02917 273 Q-------KKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRV 345

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686   390 ERAIEVFQRAIDLKPGHVDALYNLGGLYMDLGRFQRASEMYTRVLAVWPNHWRAQLNKAVSLLGAGETEEAKRALKEALK 469
Cdd:TIGR02917 346 DEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQ 425

                         250
                  ....*....|....*.
gi 15225686   470 M---TNRVELHDAVSH 482
Cdd:TIGR02917 426 LdpeLGRADLLLILSY 441
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 348-448 7.99e-13

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 65.40  E-value: 7.99e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686 348 ALFGVGEYRAAVKALEEAIYLKPD---YADAHCDLASSLHAMGEDERAIEVFQRAIDLKPGHV---DALYNLGGLYMDLG 421
Cdd:COG1729   2 ALLKAGDYDEAIAAFKAFLKRYPNsplAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPkapDALLKLGLSYLELG 81

                        90       100
                ....*....|....*....|....*..
gi 15225686 422 RFQRASEMYTRVLAVWPNHWRAQLNKA 448
Cdd:COG1729  82 DYDKARATLEELIKKYPDSEAAKEARA 108
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 382-469 1.67e-12

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 64.63  E-value: 1.67e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686 382 SLHAMGEDERAIEVFQRAIDLKPGHV---DALYNLGGLYMDLGRFQRASEMYTRVLAVWPNHWR---AQLNKAVSLLGAG 455
Cdd:COG1729   2 ALLKAGDYDEAIAAFKAFLKRYPNSPlapDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKapdALLKLGLSYLELG 81

                        90
                ....*....|....
gi 15225686 456 ETEEAKRALKEALK 469
Cdd:COG1729  82 DYDKARATLEELIK 95
COG4700 COG4700
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
305-466 4.48e-12

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 66.83  E-value: 4.48e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686 305 PQIYVNLGISLEGEGMVLSACEYYREAAI-LCPTHYRALKLLGSALFGVGEYRAAVKALEEAIYLKPDY--ADAHCDLAS 381
Cdd:COG4700  89 VQNRVRLADALLELGRYDEAIELYEEALTgIFADDPHILLGLAQALFELGRYAEALETLEKLIAKNPDFksSDAHLLYAR 168

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686 382 SLHAMGEDERAIEVFQRAIDLKPGhVDALYNLGGLYMDLGRFQRASEMYTRVL---AVWPNHWRaQLNKAVsllgageTE 458
Cdd:COG4700 169 ALEALGDLEAAEAELEALARRYSG-PEARYRYAKFLARQGRTAEAKELLEEILdeaKHMPKHYR-RLNREW-------IR 239


                ....*...
gi 15225686 459 EAKRALKE 466
Cdd:COG4700 240 EAKKLLKS 247
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 305-409 7.54e-12

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 63.10  E-value: 7.54e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686 305 PQIYVNLGISLEGEGMVLSACEYYREAAILCPTHYRALKLLGSALFGVGEYRAAVKALEEAIYLKPDYADAHCDLASSLH 384
Cdd:COG4235  17 AEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAF 96

                        90       100
                ....*....|....*....|....*
gi 15225686 385 AMGEDERAIEVFQRAIDLKPGHVDA 409
Cdd:COG4235  97 QQGDYAEAIAAWQKLLALLPADAPA 121
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 235-469 8.01e-12

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 68.96  E-value: 8.01e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686   235 IGKVLYEHQLFKEALVSFKRACEL--QPTDVRPHF-KAgncLYVLGKYKESKDEFllalEAAESGGNQwayLLPQIYVNL 311
Cdd:TIGR02917  62 LGKIYLALGDYAAAEKELRKALSLgyPKNQVLPLLaRA---YLLQGKFQQVLDEL----PGKTLLDDE---GAAELLALR 131

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686   312 GISLEGEGMVLSACEYYREAAILCPThyRALKLLGSALFGV--GEYRAAVKALEEAIYLKPDYADAHCDLASSLHAMGED 389
Cdd:TIGR02917 132 GLAYLGLGQLELAQKSYEQALAIDPR--SLYAKLGLAQLALaeNRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNI 209

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686   390 ERAIEVFQRAIDLKPGHVDALYNLGGLYMDLGRFQRASEMYTRVLAVWPNHWRAQLNKAVSLLGAGETEEAKRALKEALK 469
Cdd:TIGR02917 210 ELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALK 289
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
400-470 1.08e-11

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 65.80  E-value: 1.08e-11
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 15225686 400 IDLKPGHVDALYNLGGLYMDLGRFQRASEMYTRVLAVWPNHWRAQLNKAVSLLGAGETEEAKRALKEALKM 470
Cdd:COG0457   1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALEL 71
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 308-481 1.63e-11

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 68.19  E-value: 1.63e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686   308 YVNLGISLEGEGMVLSACEYYREAAILCPTHYRALKLLGSALFGVGEYRAAVKALEEAIYLKPDYADAHCDLASSLHAMG 387
Cdd:TIGR02917 570 ALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMK 649

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686   388 EDERAIEVFQRAIDLKPGHVDALYNLGGLYMDLGRFQRASEMYTRVLAVWPNHwrAQLNKAVSLLGA--GETEEAKRALK 465
Cdd:TIGR02917 650 NYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKA--ALGFELEGDLYLrqKDYPAAIQAYR 727

                         170       180
                  ....*....|....*....|
gi 15225686   466 EALKMT----NRVELHDAVS 481
Cdd:TIGR02917 728 KALKRApssqNAIKLHRALL 747
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 230-418 1.77e-11

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 67.71  E-value: 1.77e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686 230 DGHMAIGKVLYEHQLFKEALVSFKRACELQPTDVRPHFKAGNCLYVLGKYKEskdefllaleaaesggnqwayllpqiyv 309
Cdd:COG3914 113 EALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEE---------------------------- 164

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686 310 nlgislegegmvlsACEYYREAAILCPTHYRALKLLGSALFGVGEYRAAVKALEEAIYLKPDYADAHCDLASSLHAMGeD 389
Cdd:COG3914 165 --------------AIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQAC-D 229

                       170       180
                ....*....|....*....|....*....
gi 15225686 390 ERAIEVFQRAIDLKPGHVDALYNLGGLYM 418
Cdd:COG3914 230 WEVYDRFEELLAALARGPSELSPFALLYL 258
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 324-466 1.92e-10

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 64.72  E-value: 1.92e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686   324 ACEYYREAAILCPTHYRALKLLGSALFGVGEYRAAVKALEEAIYLKPDYADAHCDLASSLHAMGEDERAIEVFQRAIDLK 403
Cdd:TIGR02917 552 AVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ 631

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15225686   404 PGHVDALYNLGGLYMDLGRFQRASEMYTRVLAVWPNHWRAQLNKAVSLLGAGETEEAKRALKE 466
Cdd:TIGR02917 632 PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKS 694
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 210-469 2.34e-10

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 64.33  E-value: 2.34e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686   210 KELGVLRSKADGARSREEAFDghmAIGKVLYEHQLFKEALVSFKRACELQPTDVRPHFKAGNCLYVLGKYKESKDEFLLA 289
Cdd:TIGR02917 585 KALAILNEAADAAPDSPEAWL---MLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRA 661

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686   290 LE---------------AAESGGNQWAYLLPQIYVN------LGISLEGEGMVLS-----ACEYYREA---------AIL 334
Cdd:TIGR02917 662 LElkpdnteaqiglaqlLLAAKRTESAKKIAKSLQKqhpkaaLGFELEGDLYLRQkdypaAIQAYRKAlkrapssqnAIK 741

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686   335 C------------------------PTHYRALKLLGSALFGVGEYRAAVKALEEAIYLKPDYADAHCDLASsLHAMGEDE 390
Cdd:TIGR02917 742 LhrallasgntaeavktleawlkthPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAW-LYLELKDP 820

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15225686   391 RAIEVFQRAIDLKPGHVDALYNLGGLYMDLGRFQRASEMYTRVLAVWPNHWRAQLNKAVSLLGAGETEEAKRALKEALK 469
Cdd:TIGR02917 821 RALEYAERALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLLN 899
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 244-469 2.40e-10

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 64.33  E-value: 2.40e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686   244 LFKEALVSFKRACELQPTDVRPHFKAGNCLYVLGKYKESKdeFLLALEAAESGGNqwayllPQIYVNLGISLEGEGMVLS 323
Cdd:TIGR02917 344 RVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAA--EYLAKATELDPEN------AAARTQLGISKLSQGDPSE 415

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686   324 ACEYYREAAILCPTHYRALKLLGSALFGVGEYRAAVKALEEAIYLKPDYADAHCDLASSLHAMGEDERAIEVFQRAIDLK 403
Cdd:TIGR02917 416 AIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE 495

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15225686   404 PGHVDALYNLGGLYMDLGRFQRASEMYTRVLAVWPNHWRAQLNKAVSLLGAGETEEAKRALKEALK 469
Cdd:TIGR02917 496 PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAE 561
type_IV_pilW TIGR02521
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ...
 277-439 3.44e-10

type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.


Pssm-ID: 131573 [Multi-domain]  Cd Length: 234  Bit Score: 60.81  E-value: 3.44e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686   277 GKYKESKDEFLLALEAAESggnqwaylLPQIYVNLGISLEGEGMVLSACEYYREAAILCPTHYRALKLLGSALFGVGEYR 356
Cdd:TIGR02521  45 GDLEVAKENLDKALEHDPD--------DYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYE 116

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686   357 AAVKALEEAIyLKPDY---ADAHCDLASSLHAMGEDERAIEVFQRAIDLKPGHVDALYNLGGLYMDLGRFQRASEMYTRV 433
Cdd:TIGR02521 117 QAMQQFEQAI-EDPLYpqpARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERY 195


                  ....*.
gi 15225686   434 LAVWPN 439
Cdd:TIGR02521 196 QQTYNQ 201
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 218-469 4.12e-10

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 63.56  E-value: 4.12e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686   218 KADGARSREEA--------FDGHMAIGKVLYEHQLFKEALVSFKRACELQPTDVRPhfkagncLYVLGKYKESKDEFLLA 289
Cdd:TIGR02917 514 NPDDAIQRFEKvltidpknLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEP-------ALALAQYYLGKGQLKKA 586

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686   290 LEAAESGGNqWAYLLPQIYVNLGISLEGEGMVLSACEYYREAAILCPTHYRALKLLGSALFGVGEYRAAVKALEEAIYLK 369
Cdd:TIGR02917 587 LAILNEAAD-AAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK 665

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686   370 PDYADAHCDLASSLHAMGEDERAIEVFQRAIDLKPGHVDALYNLGGLYMDLGRFQRASEMYTRVLAVWPNHWRA-QLNKA 448
Cdd:TIGR02917 666 PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAiKLHRA 745

                         250       260
                  ....*....|....*....|.
gi 15225686   449 vsLLGAGETEEAKRALKEALK 469
Cdd:TIGR02917 746 --LLASGNTAEAVKTLEAWLK 764
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 344-469 5.07e-09

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 60.10  E-value: 5.07e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686   344 LLGSALFGVGEYRAAVKALEEAIYLKPDYADAHCDLASSLHAMGEDERAIEVFQRAIDLKPGHVDALYNLGGLYMDLGRF 423
Cdd:TIGR02917 470 LLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNE 549

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 15225686   424 QRASEMYTRVLAVWPNHWRAQLNKAVSLLGAGETEEAKRALKEALK 469
Cdd:TIGR02917 550 EEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAAD 595
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 329-474 1.62e-08

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 58.39  E-value: 1.62e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686  329 REAAILCPTHYRALKL---LGSALFGVGEYRAAVkALEEAIY------LKPDYAD---AHCDLASSLHAMGEDERAIEVF 396
Cdd:NF040586 465 RRVLGLGEDHPHTLMTaggLGADLRALGRFREAL-ELDEETLerhrrvFGEDHPRtlrAANNLAVSLRLLGDYREALELD 543

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686  397 QRAIDLK-----PGHVDALY---NLGGLYMDLGRFQRASEMYTRVLAV------WPNHW---RAQLNKAVSLLGAGETEE 459
Cdd:NF040586 544 REVLRRRrrvlgPDHPRTLLsanNLARDLRELGRYAEALDLLEEALERyrevlgGPDHPdtlRAAKSLAVALRRAGRLEE 623

                        170
                 ....*....|....*
gi 15225686  460 AKRALKEALKMTNRV 474
Cdd:NF040586 624 ALELAEDTYERYRRR 638
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 354-470 2.51e-08

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 53.81  E-value: 2.51e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686 354 EYRAAVKALEEAIYLKPDYADAHCDLASSLHAMGEDERAIEVFQRAIDLKPGHVDALYNLGGLYMDLGRFQRASEMYTRV 433
Cdd:COG5010   1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80

                        90       100       110
                ....*....|....*....|....*....|....*..
gi 15225686 434 LAVWPNHWRAQLNKAVSLLGAGETEEAKRALKEALKM 470
Cdd:COG5010  81 LQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALAL 117
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 230-375 8.51e-08

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 51.55  E-value: 8.51e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686 230 DGHMAIGKVLYEHQLFKEALVSFKRACELQPTDVRPHFKAGNCLYVLGKYKESKDEFLLALEAAesggnqwayllpqiyv 309
Cdd:COG4235  18 EGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD---------------- 81

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15225686 310 nlgislegegmvlsaceyyreaailcPTHYRALKLLGSALFGVGEYRAAVKALEEAIYLKPDYADA 375
Cdd:COG4235  82 --------------------------PDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPA 121
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 234-372 2.38e-07

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 50.58  E-value: 2.38e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686 234 AIGKVLYEHQLFKEALVSFKRACELQPTDVRPHFKAGNCLYVLGKYKEskdefllaleaaesggnqwayllpqiyvnlgi 313
Cdd:COG4783  43 LLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDE-------------------------------- 90

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*....
gi 15225686 314 slegegmvlsACEYYREAAILCPTHYRALKLLGSALFGVGEYRAAVKALEEAIYLKPDY 372
Cdd:COG4783  91 ----------ALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 287-469 2.40e-07

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 54.23  E-value: 2.40e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686 287 LLALEAAESGGNQWAYLLPQIYVNLGISLEGEgmvlsACEYYREAAILCPTHYRALKLLGSALfgvgeYRAAVKALEEAI 366
Cdd:COG3914   2 AAAALLALAALAAAALLAAAAAAELALAAELE-----AAALAAALGLALLLLAALAEAAAAAL-----LALAAGEAAAAA 71

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686 367 YLKPDYADAHCDLASSLHAMGEDERAIEVFQRAIDLKPGHVDALYNLGGLYMDLGRFqrasemytrvlavwpnhwraqln 446
Cdd:COG3914  72 AALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRL----------------------- 128

                       170       180
                ....*....|....*....|...
gi 15225686 447 kavsllgagetEEAKRALKEALK 469
Cdd:COG3914 129 -----------EEALAALRRALA 140
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 326-406 6.81e-07

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 48.45  E-value: 6.81e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686 326 EYYREAAILCPTHY---RALKLLGSALFGVGEYRAAVKALEEAIYLKPD---YADAHCDLASSLHAMGEDERAIEVFQRA 399
Cdd:COG1729  14 AAFKAFLKRYPNSPlapDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDspkAPDALLKLGLSYLELGDYDKARATLEEL 93


                ....*..
gi 15225686 400 IDLKPGH 406
Cdd:COG1729  94 IKKYPDS 100
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 344-406 1.04e-06

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 46.56  E-value: 1.04e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15225686   344 LLGSALFGVGEYRAAVKALEEAI---YLKPDYADAHCDLASSLHAMGEDERAIEVFQRAIDLKPGH 406
Cdd:pfam13432   2 ALARAALRAGDYDDAAAALEAALarfPESPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGD 67
TPR_12 pfam13424
Tetratricopeptide repeat;
371-436 1.14e-06

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 47.00  E-value: 1.14e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15225686   371 DYADAHCDLASSLHAMGEDERAIEVFQRAIDL--------KPGHVDALYNLGGLYMDLGRFQRASEMYTRVLAV 436
Cdd:pfam13424   1 DVATALNNLAAVLRRLGRYDEALELLEKALEIarrllgpdHPLTATTLLNLGRLYLELGRYEEALELLERALAL 74
TPR_12 pfam13424
Tetratricopeptide repeat;
409-470 1.42e-06

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 46.61  E-value: 1.42e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686   409 ALYNLGGLYMDLGRFQRASEMYTRVLAVW-----PNHW---RAQLNKAVSLLGAGETEEAKRALKEALKM 470
Cdd:pfam13424   5 ALNNLAAVLRRLGRYDEALELLEKALEIArrllgPDHPltaTTLLNLGRLYLELGRYEEALELLERALAL 74
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
238-340 1.63e-06

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 47.09  E-value: 1.63e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686 238 VLYEHQLFKEALVSFKRACELQPTDVRPHFKAGNCLYVLGKYKESKdEFLLALEAAESggnqwaylLPQIYVNLGISLEG 317
Cdd:COG3063   1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPN--------NAEALLNLAELLLE 71

                        90       100
                ....*....|....*....|...
gi 15225686 318 EGMVLSACEYYREAAILCPTHYR 340
Cdd:COG3063  72 LGDYDEALAYLERALELDPSALR 94
TPR_19 pfam14559
Tetratricopeptide repeat;
390-448 1.66e-06

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 46.04  E-value: 1.66e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 15225686   390 ERAIEVFQRAIDLKPGHVDALYNLGGLYMDLGRFQRASEMYTRVLAVWPNHWRAQLNKA 448
Cdd:pfam14559   5 AEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAALLA 63
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 353-439 2.44e-06

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 48.51  E-value: 2.44e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686  353 GEYRAAVKALEEAIYLKPDYADAhcdlASSLHAM-------GEDERAIEVFQRAIDLKPGHVDALYNLGGLYMDLGR--- 422
Cdd:PRK02603  49 GEYAEALENYEEALKLEEDPNDR----SYILYNMgiiyasnGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEkae 124

                         90       100
                 ....*....|....*....|....*...
gi 15225686  423 -----------FQRASEMYTRVLAVWPN 439
Cdd:PRK02603 125 eagdqdeaealFDKAAEYWKQAIRLAPN 152
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
416-470 3.01e-06

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 46.32  E-value: 3.01e-06
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*
gi 15225686 416 LYMDLGRFQRASEMYTRVLAVWPNHWRAQLNKAVSLLGAGETEEAkRALKEALKM 470
Cdd:COG3063   1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEA-IALEKALKL 54
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 245-437 3.26e-06

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 49.93  E-value: 3.26e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686 245 FKEALVSFKRACELQPTDVRPHFKAGNCLYVLGKYKESKDEFLLALEAAESGGnqwayllPQIYVNLGISLEGEgmvlSA 324
Cdd:cd24142  16 FELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGG-------YEKYLYLGQLSGGE----EA 84

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686 325 CEYYReaailcpthyRALKLLGSALFGVGEYRAAVKalEEAIYLKPDYADAHCdlasslhAMGE------------DERA 392
Cdd:cd24142  85 LQYYE----------KGIEILEEELQALQAASAEAE--EEAEELKRKLSSALC-------ALAEiymtdlcdepdaEQRC 145

                       170       180       190       200
                ....*....|....*....|....*....|....*....|....*
gi 15225686 393 IEVFQRAIDLKPGHVDALYNLGGLYMDLGRFQRASEMYTRVLAVW 437
Cdd:cd24142 146 EELITKALELDPTNPEALQTLASLRISQQRPDEAKEALRRSLELW 190
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 238-370 3.80e-06

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 47.65  E-value: 3.80e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686 238 VLYEHQLFKEALVSFKRACELQPTDVRPHFKAGNCLYVLGKYKEskdefllaleaaesggnqwayllpqiyvnlgisleg 317
Cdd:COG5010  63 LYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDE------------------------------------ 106

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|...
gi 15225686 318 egmvlsACEYYREAAILCPTHYRALKLLGSALFGVGEYRAAVKALEEAIYLKP 370
Cdd:COG5010 107 ------AKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
TPR_11 pfam13414
TPR repeat;
346-387 4.68e-06

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 44.00  E-value: 4.68e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 15225686   346 GSALFGVGEYRAAVKALEEAIYLKPDYADAHCDLASSLHAMG 387
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
TPR_11 pfam13414
TPR repeat;
383-421 6.04e-06

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 43.61  E-value: 6.04e-06
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 15225686   383 LHAMGEDERAIEVFQRAIDLKPGHVDALYNLGGLYMDLG 421
Cdd:pfam13414   4 YYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 411-470 8.47e-06

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 44.25  E-value: 8.47e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15225686   411 YNLGGLYMDLGRFQRASEMYTRVLAVW---PNHWRAQLNKAVSLLGAGETEEAKRALKEALKM 470
Cdd:pfam13432   1 LALARAALRAGDYDDAAAALEAALARFpesPDAAAALLLLGLAALRQGRLAEAAAAYRAALRA 63
COG3899 COG3899
Predicted ATPase [General function prediction only];
245-479 8.68e-06

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 49.47  E-value: 8.68e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686  245 FKEALVSFKRACELQPTDVRP------HFKAGNCLYVLGKYKESKDEFLLALEA-------AESGGNQWAylLPQIYVNL 311
Cdd:COG3899  721 YAEALRYLERALELLPPDPEEeyrlalLLELAEALYLAGRFEEAEALLERALAAralaalaALRHGNPPA--SARAYANL 798

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686  312 GISLEGEgmVLSACEYYREAAILCPTH------YRALKLLGSALFGVGEYRAAVKALEEAIYLKPDYADAHCDLASSLHA 385
Cdd:COG3899  799 GLLLLGD--YEEAYEFGELALALAERLgdrrleARALFNLGFILHWLGPLREALELLREALEAGLETGDAALALLALAAA 876

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686  386 MGEDERAIEVFQRAIDLKPGHVDALYNLGGlymDLGRFQRASEMYTRVLAVWPNHWRAQLNKAVSLLGAGETEEAKRALK 465
Cdd:COG3899  877 AAAAAAAAALAAAAAAAARLLAAAAAALAA---AAAAAALAAAELARLAAAAAAAAALALAAAAAAAAAAALAAAAAAAA 953

                        250
                 ....*....|....
gi 15225686  466 EALKMTNRVELHDA 479
Cdd:COG3899  954 LAAALALAAAAAAA 967
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 378-473 1.08e-05

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 48.01  E-value: 1.08e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686 378 DLASSLHAMGEDERAIEVFQRAIDLKPGHVDALYNLGGLYMDLGRFQRASEMYTRVLAVWPNH------WRAQL------ 445
Cdd:cd24142   5 EKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGgyekylYLGQLsggeea 84

                        90       100       110
                ....*....|....*....|....*....|....
gi 15225686 446 ----NKAVSLL--GAGETEEAKRALKEALKMTNR 473
Cdd:cd24142  85 lqyyEKGIEILeeELQALQAASAEAEEEAEELKR 118
TPR_12 pfam13424
Tetratricopeptide repeat;
340-402 1.24e-05

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 43.92  E-value: 1.24e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 15225686   340 RALKLLGSALFGVGEYRAAVKALEEAIYL--------KPDYADAHCDLASSLHAMGEDERAIEVFQRAIDL 402
Cdd:pfam13424   4 TALNNLAAVLRRLGRYDEALELLEKALEIarrllgpdHPLTATTLLNLGRLYLELGRYEEALELLERALAL 74
TPR COG0790
TPR repeat [General function prediction only];
285-465 1.28e-05

TPR repeat [General function prediction only];


Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 47.23  E-value: 1.28e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686 285 EFLLALEAAESGGNQWAYLLPQIYvnlgisLEGEGMVLS---ACEYYREAAILcpTHYRALKLLGSALF-GVG---EYRA 357
Cdd:COG0790  50 AAAAAAAAAAAGGAEAQYNLGLMY------AEGRGVPKDyekALEWFEKAAEQ--GDAEAQYNLGLMYEeGLGvpqDYAK 121

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686 358 AVKALEEAIYLkpDYADAHCDLASsLHAMGE-----DERAIEVFQRAIDLkpGHVDALYNLGGLYMDlGR-----FQRAS 427
Cdd:COG0790 122 ALEWYEKAAEQ--GDADAQYNLGL-LYLNGEgvpkdPAKAAEWYRKAAEQ--GDADAQYNLGVLYEN-GRgvpkdPAKAL 195

                       170       180       190
                ....*....|....*....|....*....|....*....
gi 15225686 428 EMYTRvlAVWPNHWRAQLNKAVSLL-GAGETEEAKRALK 465
Cdd:COG0790 196 EWYRK--AAEQGDADAQYNLGRLYLnGEGVEKDLEKALR 232
BTAD smart01043
Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. ...
 321-402 1.54e-05

Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. This region of AFSR along with the C terminal region is capable of independently directing actinorhodin production. This family contains TPR repeats.


Pssm-ID: 198111 [Multi-domain]  Cd Length: 145  Bit Score: 45.37  E-value: 1.54e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686    321 VLSACEYYREAAIlcpthyRALKLLGSALFGVGEYRAAVKALEEAIYLKPDYADAHCDLASSLHAMGEDERAIEVFQRAI 400
Cdd:smart01043  49 AEAERERLRELRL------EALEALAEALLALGRHEEALALLERLLALDPLRERLHRLLMRALYRAGRRAEALRAYRRLR 122


                   ..
gi 15225686    401 DL 402
Cdd:smart01043 123 RL 124
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
230-303 1.55e-05

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 46.83  E-value: 1.55e-05
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15225686 230 DGHMAIGKVLYEHQLFKEALVSFKRACELQPTDVRPHFKAGNCLYVLGKYKESKDEFLLALEAAES--GGNQWAYL 303
Cdd:COG4785 108 EAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNdpERALWLYL 183
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 341-426 1.87e-05

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 48.06  E-value: 1.87e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686   341 ALKLLGSALFGVGEYRAAVKALEEAIYLKPDYAdAHCDLASSLHAMGEDERAIEVFQRAIDLKPGHVDALYNLGGLYMDL 420
Cdd:TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPV-YYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGL 207


                  ....*.
gi 15225686   421 GRFQRA 426
Cdd:TIGR00990 208 GKYADA 213
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
276-371 3.77e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 43.24  E-value: 3.77e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686 276 LGKYKESKDEFLLALEAAESggnqwaylLPQIYVNLGISLEGEGMVLSAcEYYREAAILCPTHYRALKLLGSALFGVGEY 355
Cdd:COG3063   5 LGDLEEAEEYYEKALELDPD--------NADALNNLGLLLLEQGRYDEA-IALEKALKLDPNNAEALLNLAELLLELGDY 75

                        90
                ....*....|....*.
gi 15225686 356 RAAVKALEEAIYLKPD 371
Cdd:COG3063  76 DEALAYLERALELDPS 91
TPR_1 pfam00515
Tetratricopeptide repeat;
407-440 4.82e-05

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 40.87  E-value: 4.82e-05
                          10        20        30
                  ....*....|....*....|....*....|....
gi 15225686   407 VDALYNLGGLYMDLGRFQRASEMYTRVLAVWPNH 440
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 353-471 5.78e-05

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 46.06  E-value: 5.78e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686 353 GEYRAAVKALEEAIYLKPDYAdahcdLASSL--HAMGEDERAIEVFQRAIDLKPGHVDALYNLGGLYMDLGRFQRASEMY 430
Cdd:COG3071 207 GDHDEAERLLREALKRQWDPR-----LVRLYgrLQGGDPAKQLKRAEKWLKKHPNDPDLLLALGRLCLRNQLWGKAREYL 281

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*
gi 15225686 431 TRVLAVWPN----HWRAQLnkavsLLGAGETEEAKRALKEALKMT 471
Cdd:COG3071 282 EAALALRPSaeayAELARL-----LEQLGDPEEAAEHYRKALALA 321
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 407-440 6.54e-05

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 40.51  E-value: 6.54e-05
                           10        20        30
                   ....*....|....*....|....*....|....
gi 15225686    407 VDALYNLGGLYMDLGRFQRASEMYTRVLAVWPNH 440
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
TPR_19 pfam14559
Tetratricopeptide repeat;
421-469 8.57e-05

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 41.03  E-value: 8.57e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 15225686   421 GRFQRASEMYTRVLAVWPNHWRAQLNKAVSLLGAGETEEAKRALKEALK 469
Cdd:pfam14559   2 GDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPA 50
COG3899 COG3899
Predicted ATPase [General function prediction only];
324-468 1.06e-04

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 46.00  E-value: 1.06e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686  324 ACEYYREAAIlcpthyRALKllgsalfgVGEYRAAVKALEEAIYLKPD------YADAHCDLASSLHAMGEDERAIEVFQ 397
Cdd:COG3899  704 AARLLLRAAR------RALA--------RGAYAEALRYLERALELLPPdpeeeyRLALLLELAEALYLAGRFEEAEALLE 769

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686  398 RAID---------LKPGHVD----ALYNLGGLYmdLGRFQRASEMYTRVLAV------WPNHWRAQLNKAVSLLGAGETE 458
Cdd:COG3899  770 RALAaralaalaaLRHGNPPasarAYANLGLLL--LGDYEEAYEFGELALALaerlgdRRLEARALFNLGFILHWLGPLR 847

                        170
                 ....*....|
gi 15225686  459 EAKRALKEAL 468
Cdd:COG3899  848 EALELLREAL 857
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 378-440 1.10e-04

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 40.78  E-value: 1.10e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15225686   378 DLASSLHAMGEDERAIEVFQRAIDL---KPGHVDALYNLGGLYMDLGRFQRASEMYTRVLAVWPNH 440
Cdd:pfam13432   2 ALARAALRAGDYDDAAAALEAALARfpeSPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGD 67
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 239-341 1.22e-04

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 42.29  E-value: 1.22e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686 239 LYEHQLFKEALVSFKRACELQPTDVRP---HFKAGNCLYVLGKYKESKDEFLLALEAAESGgnqwaYLLPQIYVNLGISL 315
Cdd:COG1729   3 LLKAGDYDEAIAAFKAFLKRYPNSPLApdaLYWLGEAYYALGDYDEAAEAFEKLLKRYPDS-----PKAPDALLKLGLSY 77

                        90       100
                ....*....|....*....|....*.
gi 15225686 316 EGEGMVLSACEYYREAAILCPTHYRA 341
Cdd:COG1729  78 LELGDYDKARATLEELIKKYPDSEAA 103
LcrH_SycD TIGR02552
type III secretion low calcium response chaperone LcrH/SycD; Genes in this family are found in ...
 229-291 1.74e-04

type III secretion low calcium response chaperone LcrH/SycD; Genes in this family are found in type III secretion operons. LcrH, from Yersinia is believed to have a regulatory function in the low-calcium response of the secretion system. The same protein is also known as SycD (SYC = Specific Yop Chaperone) for its chaperone role. In Pseudomonas, where the homolog is known as PcrH, the chaperone role has been demonstrated and the regulatory role appears to be absent. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.


Pssm-ID: 274197 [Multi-domain]  Cd Length: 135  Bit Score: 42.28  E-value: 1.74e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15225686   229 FDGHMAIGKVLYEHQLFKEALVSFKRACELQPTDVRPHFKAGNCLYVLGKYKESKDEFLLALE 291
Cdd:TIGR02552  51 SRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIE 113
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 273-474 2.00e-04

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 44.91  E-value: 2.00e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686  273 LYVLGKYKESKD---EFLLALEAAESGGNQWAYLLPQiyVNLGISLEG-----EGMVLSACEYYREAAILCPTHYRALKL 344
Cdd:NF040586 572 LRELGRYAEALDlleEALERYREVLGGPDHPDTLRAA--KSLAVALRRagrleEALELAEDTYERYRRRFGPDHPDTLAA 649

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686  345 ---LGSALFGVGEYRAAVKALEEAI--YLKpDYADAH-----C--DLASSLHAMGEDERAIEVFQRAID-----LKPGH- 406
Cdd:NF040586 650 alsLANDLRALGDADEARELAREVLdrYRR-VLGEDHpftlaCrnNLAVLLRALGDPEEARELAEAALEglrerLGPDHp 728

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686  407 --VDALYNLGGLYMDLGRFQRAS---------EMYTRVLAVWPNH---WRAQLNKAVSLLGAGETEEAKRALKEALKMTN 472
Cdd:NF040586 729 ytLAAAVNLANDLAALGDLDAALgeealerlrRLLGEDLRAGPDHpdtLACAANLALDLRATGRTEEAEELRADTLARLR 808


                 ..
gi 15225686  473 RV 474
Cdd:NF040586 809 RV 810
ZZ cd02249
Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ...
 730-763 2.02e-04

Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins.


Pssm-ID: 239069 [Multi-domain]  Cd Length: 46  Bit Score: 39.73  E-value: 2.02e-04
                        10        20        30
                ....*....|....*....|....*....|....*
gi 15225686 730 VCSVCRYPIIGSRFK-EVKTGFSLCNQCYSEGKIP 763
Cdd:cd02249   2 SCDGCLKPIVGVRYHcLVCEDFDLCSSCYAKGKKG 36
PRK11788 PRK11788
tetratricopeptide repeat protein; Provisional
 376-434 2.10e-04

tetratricopeptide repeat protein; Provisional


Pssm-ID: 236983 [Multi-domain]  Cd Length: 389  Bit Score: 44.41  E-value: 2.10e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 15225686  376 HCDLASSLHAMGEDERAIEVFQRAIDLKPGHVDALYNLGGLYMDLGRFQRASEMYTRVL 434
Cdd:PRK11788 183 YCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVE 241
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 353-469 2.20e-04

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 44.13  E-value: 2.20e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686 353 GEYRAAVKALEEAIYLKPDYADAHCDLASSLHAMGEDERAIEVFQRAIDLKPG-HVDALYNLGGLYMDLGRFQRASEMYT 431
Cdd:COG3071  30 GRYARAEKLLSKAAEHSEAPLLAYLLAARAAQALGDYERRDEYLAQALELAPEaELAVLLTRAELLLDQGQAEQALATLE 109

                        90       100       110       120
                ....*....|....*....|....*....|....*....|
gi 15225686 432 RVLAVWPNHWRAQ--LNKAvsLLGAGETEEAKRALKEALK 469
Cdd:COG3071 110 ALRAGAPRHPQVLrlLLQA--YRQLGDWEELLELLPALRK 147
TPR_19 pfam14559
Tetratricopeptide repeat;
353-409 2.79e-04

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 39.87  E-value: 2.79e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 15225686   353 GEYRAAVKALEEAIYLKPDYADAHCDLASSLHAMGEDERAIEVFQRAIDLKPGHVDA 409
Cdd:pfam14559   2 GDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRY 58
TPR_7 pfam13176
Tetratricopeptide repeat;
409-437 3.49e-04

Tetratricopeptide repeat;


Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 38.68  E-value: 3.49e-04
                          10        20
                  ....*....|....*....|....*....
gi 15225686   409 ALYNLGGLYMDLGRFQRASEMYTRVLAVW 437
Cdd:pfam13176   1 ALLNLGRIYRKLGDYDEAISLYEQALALA 29
LcrH_SycD TIGR02552
type III secretion low calcium response chaperone LcrH/SycD; Genes in this family are found in ...
 328-402 3.79e-04

type III secretion low calcium response chaperone LcrH/SycD; Genes in this family are found in type III secretion operons. LcrH, from Yersinia is believed to have a regulatory function in the low-calcium response of the secretion system. The same protein is also known as SycD (SYC = Specific Yop Chaperone) for its chaperone role. In Pseudomonas, where the homolog is known as PcrH, the chaperone role has been demonstrated and the regulatory role appears to be absent. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.


Pssm-ID: 274197 [Multi-domain]  Cd Length: 135  Bit Score: 41.13  E-value: 3.79e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686   328 YREAAI----LC---PTHYRALKLLGSALFGVGEYRAAVKALEEAIYLKPDYADAHCDLASSLHAMGEDERAIEVFQRAI 400
Cdd:TIGR02552  33 YDEALKlfqlLAaydPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAI 112


                  ..
gi 15225686   401 DL 402
Cdd:TIGR02552 113 EI 114
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 343-406 5.34e-04

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 43.00  E-value: 5.34e-04
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15225686 343 KLLGSA--LFGVGEYRAAVKALEEAIYLKPDYADAHcDLASSLHA-MGEDERAIEVFQRAIDLKPGH 406
Cdd:cd24142   2 ELLEKAeeLLDQGNFELALKFLQRALELEPNNVEAL-ELLGEILLeLGDVEEAREVLLRAIELDPDG 67
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 273-375 5.54e-04

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 40.36  E-value: 5.54e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686 273 LYVLGKYKESKDEFLLALEAAESGgnqwaYLLPQIYVNLGISLEGEGMVLSACEYYREAAILCPTHYR---ALKLLGSAL 349
Cdd:COG1729   3 LLKAGDYDEAIAAFKAFLKRYPNS-----PLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKapdALLKLGLSY 77

                        90       100
                ....*....|....*....|....*.
gi 15225686 350 FGVGEYRAAVKALEEAIYLKPDYADA 375
Cdd:COG1729  78 LELGDYDKARATLEELIKKYPDSEAA 103
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 230-307 7.49e-04

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 40.37  E-value: 7.49e-04
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15225686 230 DGHMAIGKVLYEHQLFKEALVSFKRACELQPTDVRPHFKAGNCLYVLGKYKESKDEFLLALEAAeSGGNQWAYLLPQI 307
Cdd:COG4235  52 DALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALL-PADAPARLLEASI 128
TPR_11 pfam13414
TPR repeat;
236-277 8.57e-04

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 37.45  E-value: 8.57e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 15225686   236 GKVLYEHQLFKEALVSFKRACELQPTDVRPHFKAGNCLYVLG 277
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
TPR_1 pfam00515
Tetratricopeptide repeat;
373-406 1.06e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 37.02  E-value: 1.06e-03
                          10        20        30
                  ....*....|....*....|....*....|....
gi 15225686   373 ADAHCDLASSLHAMGEDERAIEVFQRAIDLKPGH 406
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
TPR_1 pfam00515
Tetratricopeptide repeat;
339-372 1.58e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 36.63  E-value: 1.58e-03
                          10        20        30
                  ....*....|....*....|....*....|....
gi 15225686   339 YRALKLLGSALFGVGEYRAAVKALEEAIYLKPDY 372
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
TPR COG0790
TPR repeat [General function prediction only];
287-432 1.74e-03

TPR repeat [General function prediction only];


Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 41.07  E-value: 1.74e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686 287 LLALEAAESGGNQWAYLLPQIYVNLGISLEGEGMVLSACEYYREAAILCPTHYRALKLLGSALF-GVG---EYRAAVKAL 362
Cdd:COG0790  11 AAAAAAALAAAAAAAGAAAAAAAAAAAAAALAAAAGAAAAAAAAAAAAAAGGAEAQYNLGLMYAeGRGvpkDYEKALEWF 90

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686 363 EEAIylKPDYADAHCDLASsLHAMGE-----DERAIEVFQRAIDLkpGHVDALYNLGGLYMDlGR-----FQRASEMYTR 432
Cdd:COG0790  91 EKAA--EQGDAEAQYNLGL-MYEEGLgvpqdYAKALEWYEKAAEQ--GDADAQYNLGLLYLN-GEgvpkdPAKAAEWYRK 164
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 373-406 2.27e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 36.27  E-value: 2.27e-03
                           10        20        30
                   ....*....|....*....|....*....|....
gi 15225686    373 ADAHCDLASSLHAMGEDERAIEVFQRAIDLKPGH 406
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
TPR_12 pfam13424
Tetratricopeptide repeat;
307-366 2.33e-03

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 37.37  E-value: 2.33e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15225686   307 IYVNLGISLEGEGMVLSACEYYREAAILC-----PTH---YRALKLLGSALFGVGEYRAAVKALEEAI 366
Cdd:pfam13424   5 ALNNLAAVLRRLGRYDEALELLEKALEIArrllgPDHpltATTLLNLGRLYLELGRYEEALELLERAL 72
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 212-476 3.35e-03

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 40.74  E-value: 3.35e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686   212 LGVLRSKA------DGARSREEAFDGHMAIGKVLYEHQL---FKEALVSFKRAC---ELQPTDVRPHFKAGNCLYVLGKY 279
Cdd:TIGR00990 268 LQSFRPKPrpagleDSNELDEETGNGQLQLGLKSPESKAdesYEEAARAFEKALdlgKLGEKEAIALNLRGTFKCLKGKH 347

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686   280 KESKDEFLLALEAaESGGNQWAYLLPQIYVNLGISLEGEgmvlsacEYYREAAILCPTHYRALKLLGSALFGVGEYRAAV 359
Cdd:TIGR00990 348 LEALADLSKSIEL-DPRVTQSYIKRASMNLELGDPDKAE-------EDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAG 419

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686   360 KALEEAIYLKPDYADAHCDLASSLHAMGEDERAIEVFQRAIDLKPGHVDALYNLGGLYMDLGRFQRASEMYTRVLA---- 435
Cdd:TIGR00990 420 KDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEleke 499

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*....
gi 15225686   436 -------VWPnhwraQLNKAVSLLGAGET-EEAKRALKEALKMTNRVEL 476
Cdd:TIGR00990 500 tkpmymnVLP-----LINKALALFQWKQDfIEAENLCEKALIIDPECDI 543
TPR_17 pfam13431
Tetratricopeptide repeat;
396-426 3.51e-03

Tetratricopeptide repeat;


Pssm-ID: 433201 [Multi-domain]  Cd Length: 34  Bit Score: 35.60  E-value: 3.51e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 15225686   396 FQRAIDLKPGHVDALYNLGGLYMDLGRFQRA 426
Cdd:pfam13431   2 YLKALELDPNNADAYYNLAVLLLELGQSETA 32
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 232-293 3.63e-03

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 38.63  E-value: 3.63e-03
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15225686 232 HMAIGKVLYEHQLFKEALVSFKRACELQPTDVRPHFKAGNCLYVLGKYKESKDEFLLALEAA 293
Cdd:COG4783  75 RLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELD 136
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 232-293 3.87e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 38.79  E-value: 3.87e-03
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15225686 232 HMAIGKVLYEHQLFKEALVSFKRACELQPTDVRPHFKAGNCLYVLGKYKESKDEFLLALEAA 293
Cdd:COG5010  91 YYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
OM_YfiO TIGR03302
outer membrane assembly lipoprotein YfiO; Members of this protein family include YfiO, a ...
 353-440 4.23e-03

outer membrane assembly lipoprotein YfiO; Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 274513 [Multi-domain]  Cd Length: 235  Bit Score: 39.46  E-value: 4.23e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686   353 GEYRAAVKALEEAIYLKP--DYA-DAHCDLASSLHAMGEDERAIEVFQRAIDLKPGHVD---ALYNLGGLYM-------- 418
Cdd:TIGR03302  47 GDYTEAIKYFEALESRYPfsPYAeQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDadyAYYLRGLSNYnqidrvdr 126

                          90       100
                  ....*....|....*....|..
gi 15225686   419 DLGRFQRASEMYTRVLAVWPNH 440
Cdd:TIGR03302 127 DQTAAREAFEAFQELIRRYPNS 148
PRK11788 PRK11788
tetratricopeptide repeat protein; Provisional
 370-470 6.64e-03

tetratricopeptide repeat protein; Provisional


Pssm-ID: 236983 [Multi-domain]  Cd Length: 389  Bit Score: 39.79  E-value: 6.64e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225686  370 PDYADAHCDLAssLHAMGED-------ERAIEVFQRAIDLKPGHVDALYNLGGLYMDLGRFQRASEMYTRVLAVWPNHWR 442
Cdd:PRK11788  99 PDLTREQRLLA--LQELGQDylkagllDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLR 176

                         90       100       110
                 ....*....|....*....|....*....|...
gi 15225686  443 AQLNK-----AVSLLGAGETEEAKRALKEALKM 470
Cdd:PRK11788 177 VEIAHfycelAQQALARGDLDAARALLKKALAA 209
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 373-405 8.90e-03

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 34.42  E-value: 8.90e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 15225686   373 ADAHCDLASSLHAMGEDERAIEVFQRAIDLKPG 405
Cdd:pfam07719   1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 342-405 9.67e-03

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 39.12  E-value: 9.67e-03
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15225686 342 LKLLGSALFGVGEYRAAVKALEEAIYLKPDyADAHCDLASSLHAMGEDERAIEVFQRAIDLKPG 405
Cdd:COG3071 261 LLALGRLCLRNQLWGKAREYLEAALALRPS-AEAYAELARLLEQLGDPEEAAEHYRKALALALG 323
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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