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Conserved domains on  [gi|15225223|ref|NP_180789|]
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uclacyanin 1 [Arabidopsis thaliana]

Protein Classification

phytocyanin family protein( domain architecture ID 10136022)

phytocyanin family protein may be involved in electron transfer reactions with the Cu center transitioning between the oxidized Cu(II) form and the reduced Cu(I) form; similar to Pisum sativum blue copper protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Phytocyanin cd04216
Phytocyanins are plant blue or type I copper proteins; Phytocyanins are plant blue or type I ...
 24-121 2.90e-49

Phytocyanins are plant blue or type I copper proteins; Phytocyanins are plant blue or type I copper proteins. They are involved in electron transfer reactions with the Cu center transitioning between the oxidized Cu(II) form and the reduced Cu(I) form. Phytocyanins are classified into four groups: stellacyanin, plantacyanin, uclacyanin and early nodulin groups. Stellacyanin appears to be associated with the plant cell wall; it may be involved in oxidative reactions to build polymeric material making up the cell wall. Plantacyanin is shown to play a role in reproduction in Arabidopsis. Plantacyanins may also be stress-related proteins and may be involved in plant defense responses. The early nodulin-like protein (OsENODL1) from Oryza sativa is expressed specifically at the late developmental stage of the seeds.


:

Pssm-ID: 259878 [Multi-domain]  Cd Length: 98  Bit Score: 157.42  E-value: 2.90e-49
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225223  24 TDHTIGGPSGWTVGASLRTWAAGQTFAVGDNLVFSYPAAFHDVVEVTKPEFDSCQAVKPLITFANGNSLVPLTTPGKRYF 103
Cdd:cd04216   1 TDYTVGDSNGWDLPVNYTAWASGKTFRVGDSLVFNYNAGAHSVVEVNEADYDSCDTSNPINTYTSGNDSVTLTKPGTRYF 80

                        90
                ....*....|....*...
gi 15225223 104 ICGMPGHCSQGMKLEVNV 121
Cdd:cd04216  81 ICGVPGHCQSGMKLAINV 98
 
Name Accession Description Interval E-value
Phytocyanin cd04216
Phytocyanins are plant blue or type I copper proteins; Phytocyanins are plant blue or type I ...
 24-121 2.90e-49

Phytocyanins are plant blue or type I copper proteins; Phytocyanins are plant blue or type I copper proteins. They are involved in electron transfer reactions with the Cu center transitioning between the oxidized Cu(II) form and the reduced Cu(I) form. Phytocyanins are classified into four groups: stellacyanin, plantacyanin, uclacyanin and early nodulin groups. Stellacyanin appears to be associated with the plant cell wall; it may be involved in oxidative reactions to build polymeric material making up the cell wall. Plantacyanin is shown to play a role in reproduction in Arabidopsis. Plantacyanins may also be stress-related proteins and may be involved in plant defense responses. The early nodulin-like protein (OsENODL1) from Oryza sativa is expressed specifically at the late developmental stage of the seeds.


Pssm-ID: 259878 [Multi-domain]  Cd Length: 98  Bit Score: 157.42  E-value: 2.90e-49
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225223  24 TDHTIGGPSGWTVGASLRTWAAGQTFAVGDNLVFSYPAAFHDVVEVTKPEFDSCQAVKPLITFANGNSLVPLTTPGKRYF 103
Cdd:cd04216   1 TDYTVGDSNGWDLPVNYTAWASGKTFRVGDSLVFNYNAGAHSVVEVNEADYDSCDTSNPINTYTSGNDSVTLTKPGTRYF 80

                        90
                ....*....|....*...
gi 15225223 104 ICGMPGHCSQGMKLEVNV 121
Cdd:cd04216  81 ICGVPGHCQSGMKLAINV 98
Cu_bind_like pfam02298
Plastocyanin-like domain; This family represents a domain found in flowering plants related to ...
 34-115 3.69e-43

Plastocyanin-like domain; This family represents a domain found in flowering plants related to the copper binding protein plastocyanin. Some members of this family may not bind copper due to the lack of key residues.


Pssm-ID: 280462  Cd Length: 84  Bit Score: 141.33  E-value: 3.69e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225223    34 WTVGAS--LRTWAAGQTFAVGDNLVFSYPAAFHDVVEVTKPEFDSCQAVKPLITFANGNSLVPLTTPGKRYFICGMPGHC 111
Cdd:pfam02298   1 WTVNAEsdYTTWAQGKTFRVGDTLVFKYDSDFHNVVEVTKADYESCDTSKPIRNYTTGSDKVTLTKPGPNYFICGVPGHC 80


                  ....
gi 15225223   112 SQGM 115
Cdd:pfam02298  81 KFGM 84
PLN03148 PLN03148
Blue copper-like protein; Provisional
 7-153 2.01e-19

Blue copper-like protein; Provisional


Pssm-ID: 178693  Cd Length: 167  Bit Score: 82.62  E-value: 2.01e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225223    7 LIIISVLATTLIGLTVATDHTIGGPSGWTVGASLRTWAAGQTFAVGDNLVFSYPAAFHDVVEVTKPEFDSCQAVKPLITF 86
Cdd:PLN03148   4 LLLFCFFALFSASATTATDHIVGANKGWNPGINYTLWANNQTFYVGDLISFRYQKTQYNVFEVNQTGYDNCTTEGAAGNW 83

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15225223   87 ANGNSLVPLTTPGKRYFICGmPGHCSQGMKLevnvvpTATVAPTAPLPNTVPSLNAPSPSSVLPIQP 153
Cdd:PLN03148  84 TSGKDFIPLNKAKRYYFICG-NGQCFNGMKV------TILVHPLPPPPSHTAAANGAKSHSAAPAAF 143
 
Name Accession Description Interval E-value
Phytocyanin cd04216
Phytocyanins are plant blue or type I copper proteins; Phytocyanins are plant blue or type I ...
 24-121 2.90e-49

Phytocyanins are plant blue or type I copper proteins; Phytocyanins are plant blue or type I copper proteins. They are involved in electron transfer reactions with the Cu center transitioning between the oxidized Cu(II) form and the reduced Cu(I) form. Phytocyanins are classified into four groups: stellacyanin, plantacyanin, uclacyanin and early nodulin groups. Stellacyanin appears to be associated with the plant cell wall; it may be involved in oxidative reactions to build polymeric material making up the cell wall. Plantacyanin is shown to play a role in reproduction in Arabidopsis. Plantacyanins may also be stress-related proteins and may be involved in plant defense responses. The early nodulin-like protein (OsENODL1) from Oryza sativa is expressed specifically at the late developmental stage of the seeds.


Pssm-ID: 259878 [Multi-domain]  Cd Length: 98  Bit Score: 157.42  E-value: 2.90e-49
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225223  24 TDHTIGGPSGWTVGASLRTWAAGQTFAVGDNLVFSYPAAFHDVVEVTKPEFDSCQAVKPLITFANGNSLVPLTTPGKRYF 103
Cdd:cd04216   1 TDYTVGDSNGWDLPVNYTAWASGKTFRVGDSLVFNYNAGAHSVVEVNEADYDSCDTSNPINTYTSGNDSVTLTKPGTRYF 80

                        90
                ....*....|....*...
gi 15225223 104 ICGMPGHCSQGMKLEVNV 121
Cdd:cd04216  81 ICGVPGHCQSGMKLAINV 98
Cu_bind_like pfam02298
Plastocyanin-like domain; This family represents a domain found in flowering plants related to ...
 34-115 3.69e-43

Plastocyanin-like domain; This family represents a domain found in flowering plants related to the copper binding protein plastocyanin. Some members of this family may not bind copper due to the lack of key residues.


Pssm-ID: 280462  Cd Length: 84  Bit Score: 141.33  E-value: 3.69e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225223    34 WTVGAS--LRTWAAGQTFAVGDNLVFSYPAAFHDVVEVTKPEFDSCQAVKPLITFANGNSLVPLTTPGKRYFICGMPGHC 111
Cdd:pfam02298   1 WTVNAEsdYTTWAQGKTFRVGDTLVFKYDSDFHNVVEVTKADYESCDTSKPIRNYTTGSDKVTLTKPGPNYFICGVPGHC 80


                  ....
gi 15225223   112 SQGM 115
Cdd:pfam02298  81 KFGM 84
Stellacyanin cd13920
Stellacyanin is a subclass of phytocyanins, a plant type I copper protein; Stellacyanin is a ...
 24-121 1.64e-36

Stellacyanin is a subclass of phytocyanins, a plant type I copper protein; Stellacyanin is a subclass of the phytocyanins, a ubiquitous family of plant cupredoxins. Stellacyanin is involved in electron transfer reactions with the Cu center transitioning between the oxidized Cu(II) form and the reduced Cu(I) form. The copper is tetrahedrally coordinated by a cysteine, 2 histidines, and a glutamine residue. The glutamine residue substitutes for a methione ligand typically found in other blue copper proteins. The exact function of stellacyanin is unknown. However, stellacyanin appears to be associated with the plant cell wall; it may be involved in oxidative reactions to build polymeric material making up the cell wall.


Pssm-ID: 259987 [Multi-domain]  Cd Length: 101  Bit Score: 125.12  E-value: 1.64e-36
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225223  24 TDHTIGGPSGWTVGASL---RTWAAGQTFAVGDNLVFSYPAAFHDVVEVTKPEFDSCQAVKPLITFANGNSLVPLTTPGK 100
Cdd:cd13920   1 TDHIVGGSLGWSIPPNAsfyTDWAANRTFRVGDSLVFNFEAGVHNVVEVSKEEYDNCTTTNPIKVFTTGPVIITLNETGT 80

                        90       100
                ....*....|....*....|.
gi 15225223 101 RYFICGMPGHCSQGMKLEVNV 121
Cdd:cd13920  81 RYFICTVGNHCSLGQKVSINV 101
Mavicyanin cd11014
Mavicyanin is a subclass of phytocyanins, a plant blue copper protein; Mavicyanin is a ...
 24-122 2.02e-32

Mavicyanin is a subclass of phytocyanins, a plant blue copper protein; Mavicyanin is a glycosylated protein isolated from Cucurbita pepo medullosa (zucchini) peelings. It belongs to the phytocyanin family of blue copper proteins, a ubiquitous family of plant cupredoxins. Mavicyanin is involved in electron transfer reactions with the Cu center transitioning between the oxidized Cu(II) form and the reduced Cu(I) form. The copper is tetrahedrally coordinated by a cysteine, 2 histidines, and a glutamine residue, like in the case of stellacyanin. The biological roles of mavicyanin have not been elucidated yet.


Pssm-ID: 259900  Cd Length: 101  Bit Score: 114.41  E-value: 2.02e-32
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225223  24 TDHTIGGPSGWTVGASL--RTWAAGQTFAVGDNLVFSYPAAFHDVVEVTKPEFDSCQAVKPLITFANGNSLVPLTTPGKR 101
Cdd:cd11014   1 TVYKVGDSDGWTVYDSDyyYKWSSSKTFHVGDSLIFQYNKEFHDVTEVTGEEFESCNSTSPIAVYNTGHDIIKLTKPGQY 80

                        90       100
                ....*....|....*....|.
gi 15225223 102 YFICGMPGHCSQGMKLEVNVV 122
Cdd:cd11014  81 YFICGVPGHCDSGQKLQVNVT 101
OsENODL1_like cd11019
Early nodulin-like protein (OsENODL1) and similar proteins; This family includes early ...
 24-121 3.45e-29

Early nodulin-like protein (OsENODL1) and similar proteins; This family includes early nodulin-like protein (OsENODL1) from Oryza sativa and similar proteins. It belongs to the phytocyanin family of blue copper proteins, a ubiquitous family of plant cupredoxins. Phytocyanin is involved in electron transfer reactions with the Cu center transitioning between the oxidized Cu(II) form and the reduced Cu(I) form. OsENODL1 expression occurs specifically at the late developmental stage of the seeds. Members of this subgroup appear to have lost the T1 copper binding site.


Pssm-ID: 259905  Cd Length: 103  Bit Score: 106.20  E-value: 3.45e-29
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225223  24 TDHTIGGPSGWTV----GASLRTWAAGQTFAVGDNLVFSYPAAFHDVVEVTKPEFDSCQAVKPLITFANGNSLVPLTTPG 99
Cdd:cd11019   1 REFKVGGKDGWKVppsaSESYNQWAERNRFQVGDSLVFKYDKGNDSVLEVTKEDYDSCNTSSPIARFNDGNTKFTLDRSG 80

                        90       100
                ....*....|....*....|..
gi 15225223 100 KRYFICGMPGHCSQGMKLEVNV 121
Cdd:cd11019  81 PFYFISGAPGHCEKGQKLIVVV 102
Plantacyanin cd11013
Plantacyanin is a subclass of phytocyanins, plant type I copper proteins; Plantacyanins belong ...
 24-121 5.52e-24

Plantacyanin is a subclass of phytocyanins, plant type I copper proteins; Plantacyanins belong to the phytocyanin family of blue copper proteins, a ubiquitous family of plant cupredoxins. Plantacyanin is involved in electron transfer reactions with the Cu center transitioning between the oxidized Cu(II) form and the reduced Cu(I) form. The exact function of plantacyanin is unknown. However plantacyanin is shown to play a role in reproduction in Arabidopsis. Plantacyanins may also be stress-related proteins and be involved in plant defense responses.


Pssm-ID: 259899  Cd Length: 95  Bit Score: 92.42  E-value: 5.52e-24
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225223  24 TDHTIGGPSGWTVGASlrTWAAGQTFAVGDNLVFSYPAAFHDVVEVTKPEFDSCQAVKPLITFANGNSLVPLtTPGKRYF 103
Cdd:cd11013   1 ATYVVGDSIGWTFGVV--GWPNGKTFRAGDVLVFNYDPSAHNVVVVDEGGYRTCKAPPGAIVYTSGDDKITL-PKGVNYF 77

                        90
                ....*....|....*...
gi 15225223 104 ICGMPGHCSQGMKLEVNV 121
Cdd:cd11013  78 ICSFPGHCTSGMKIAVTA 95
Phytocyanin_like_1 cd11017
A subclass of phytocyanins, plant blue or type I copper proteins; Phytocyanins are plant blue ...
 24-121 8.61e-20

A subclass of phytocyanins, plant blue or type I copper proteins; Phytocyanins are plant blue or type I copper proteins. They are involved in electron transfer reactions with the Cu center transitioning between the oxidized Cu(II) form and the reduced Cu(I) form. Phytocyanins are classified into four groups: stellacyanin, plantacyanin, uclacyanin and early nodulin groups. Members of this unknown subgroup appear to have lost the T1 copper binding site.


Pssm-ID: 259903  Cd Length: 99  Bit Score: 81.67  E-value: 8.61e-20
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225223  24 TDHTIGGPS-GWTVGASLRTWAAGQTFAVGDNLVFSYPAAFHDVVEVTKPEFDSCQAVKPLI-TFANGNSLVPLTTPGKR 101
Cdd:cd11017   1 TLHTVGGNRiGWNPNINYTDWAKMHGFYSGDWLVFRYQRGRHNVVQVNETGYDNCDASNPISnYSSGGRDIFQLNETKRY 80

                        90       100
                ....*....|....*....|
gi 15225223 102 YFICGMpGHCSQGMKLEVNV 121
Cdd:cd11017  81 YFICGR-GYCYGGMKLAITV 99
PLN03148 PLN03148
Blue copper-like protein; Provisional
 7-153 2.01e-19

Blue copper-like protein; Provisional


Pssm-ID: 178693  Cd Length: 167  Bit Score: 82.62  E-value: 2.01e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225223    7 LIIISVLATTLIGLTVATDHTIGGPSGWTVGASLRTWAAGQTFAVGDNLVFSYPAAFHDVVEVTKPEFDSCQAVKPLITF 86
Cdd:PLN03148   4 LLLFCFFALFSASATTATDHIVGANKGWNPGINYTLWANNQTFYVGDLISFRYQKTQYNVFEVNQTGYDNCTTEGAAGNW 83

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15225223   87 ANGNSLVPLTTPGKRYFICGmPGHCSQGMKLevnvvpTATVAPTAPLPNTVPSLNAPSPSSVLPIQP 153
Cdd:PLN03148  84 TSGKDFIPLNKAKRYYFICG-NGQCFNGMKV------TILVHPLPPPPSHTAAANGAKSHSAAPAAF 143
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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