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Conserved domains on  [gi|15225232|ref|NP_180168|]
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Mannose-binding lectin superfamily protein [Arabidopsis thaliana]

Protein Classification

jacalin family lectin; zinc metalloproteinase family protein( domain architecture ID 10477402)

jacalin family lectin is a sugar-binding protein containing a jacalin domain| zinc metalloproteinase family protein contains an HEXXH motif characteristic of metallopeptidases; contains a Jacalin-like lectin domain that may bind mono- or oligosaccharides

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Jacalin pfam01419
Jacalin-like lectin domain; Proteins containing this domain are lectins. It is found in 1 to 6 ...
 314-446 7.92e-64

Jacalin-like lectin domain; Proteins containing this domain are lectins. It is found in 1 to 6 copies in these proteins. The domain is also found in the animal prostatic spermine-binding protein.


:

Pssm-ID: 396138 [Multi-domain]  Cd Length: 134  Bit Score: 202.12  E-value: 7.92e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225232   314 GESWDDGAFDGVRKIYVGQGENGIASVKFVYDKNNQLVLGEEHGKHTLLGYEEFELDYPSEYITAVEGYYDKVFGSESSV 393
Cdd:pfam01419   1 GASWDDGVYDGVRKVYVGQGGDGITYIKFEYVKGGGKVEGDEHGKKGLLGPEEFEIDYPDEYITSVEGTYDKVFGSDSEV 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 15225232   394 IVMLKFKTNK-RTSPPYGMDAGVSFILGKEGHKVVGFHGKASPELYQIGVTVAP 446
Cdd:pfam01419  81 ITSLTFKTNKgRTSPFFGTPSGTKFSLEVKGKKIVGFHGRAGNALNALGAYFAP 134
Jacalin pfam01419
Jacalin-like lectin domain; Proteins containing this domain are lectins. It is found in 1 to 6 ...
 158-292 1.02e-46

Jacalin-like lectin domain; Proteins containing this domain are lectins. It is found in 1 to 6 copies in these proteins. The domain is also found in the animal prostatic spermine-binding protein.


:

Pssm-ID: 396138 [Multi-domain]  Cd Length: 134  Bit Score: 157.82  E-value: 1.02e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225232   158 GSPWDHGIYTGIRKVYVTFSPVSISHIKVDYDK-DGKVETRQDGDMLGenrvqGQPNEFVVDYPYEYITSIEVTCDKV-S 235
Cdd:pfam01419   1 GASWDDGVYDGVRKVYVGQGGDGITYIKFEYVKgGGKVEGDEHGKKGL-----LGPEEFEIDYPDEYITSVEGTYDKVfG 75

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 15225232   236 GNTNRVRSLSFKTSKDRTSPTYGRKSERTFVFESKGRALVGLHGRCCWAIDALGAHF 292
Cdd:pfam01419  76 SDSEVITSLTFKTNKGRTSPFFGTPSGTKFSLEVKGKKIVGFHGRAGNALNALGAYF 132
Jacalin pfam01419
Jacalin-like lectin domain; Proteins containing this domain are lectins. It is found in 1 to 6 ...
 13-144 1.40e-44

Jacalin-like lectin domain; Proteins containing this domain are lectins. It is found in 1 to 6 copies in these proteins. The domain is also found in the animal prostatic spermine-binding protein.


:

Pssm-ID: 396138 [Multi-domain]  Cd Length: 134  Bit Score: 152.05  E-value: 1.40e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225232    13 GNQWDDGaDHENVTKIHVRGGLEGIQFIKFEYVKAGQTVVGPIHGVSGKGFTQTFEINHLNgEHVVSVKGCYDNI----S 88
Cdd:pfam01419   1 GASWDDG-VYDGVRKVYVGQGGDGITYIKFEYVKGGGKVEGDEHGKKGLLGPEEFEIDYPD-EYITSVEGTYDKVfgsdS 78

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 15225232    89 GVIQALQFETN-QRSSEVMGYdDTGTKFTLEISGNKITGFHGSADANLKSLGAYFTP 144
Cdd:pfam01419  79 EVITSLTFKTNkGRTSPFFGT-PSGTKFSLEVKGKKIVGFHGRAGNALNALGAYFAP 134
 
Name Accession Description Interval E-value
Jacalin pfam01419
Jacalin-like lectin domain; Proteins containing this domain are lectins. It is found in 1 to 6 ...
 314-446 7.92e-64

Jacalin-like lectin domain; Proteins containing this domain are lectins. It is found in 1 to 6 copies in these proteins. The domain is also found in the animal prostatic spermine-binding protein.


Pssm-ID: 396138 [Multi-domain]  Cd Length: 134  Bit Score: 202.12  E-value: 7.92e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225232   314 GESWDDGAFDGVRKIYVGQGENGIASVKFVYDKNNQLVLGEEHGKHTLLGYEEFELDYPSEYITAVEGYYDKVFGSESSV 393
Cdd:pfam01419   1 GASWDDGVYDGVRKVYVGQGGDGITYIKFEYVKGGGKVEGDEHGKKGLLGPEEFEIDYPDEYITSVEGTYDKVFGSDSEV 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 15225232   394 IVMLKFKTNK-RTSPPYGMDAGVSFILGKEGHKVVGFHGKASPELYQIGVTVAP 446
Cdd:pfam01419  81 ITSLTFKTNKgRTSPFFGTPSGTKFSLEVKGKKIVGFHGRAGNALNALGAYFAP 134
Jacalin pfam01419
Jacalin-like lectin domain; Proteins containing this domain are lectins. It is found in 1 to 6 ...
 158-292 1.02e-46

Jacalin-like lectin domain; Proteins containing this domain are lectins. It is found in 1 to 6 copies in these proteins. The domain is also found in the animal prostatic spermine-binding protein.


Pssm-ID: 396138 [Multi-domain]  Cd Length: 134  Bit Score: 157.82  E-value: 1.02e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225232   158 GSPWDHGIYTGIRKVYVTFSPVSISHIKVDYDK-DGKVETRQDGDMLGenrvqGQPNEFVVDYPYEYITSIEVTCDKV-S 235
Cdd:pfam01419   1 GASWDDGVYDGVRKVYVGQGGDGITYIKFEYVKgGGKVEGDEHGKKGL-----LGPEEFEIDYPDEYITSVEGTYDKVfG 75

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 15225232   236 GNTNRVRSLSFKTSKDRTSPTYGRKSERTFVFESKGRALVGLHGRCCWAIDALGAHF 292
Cdd:pfam01419  76 SDSEVITSLTFKTNKGRTSPFFGTPSGTKFSLEVKGKKIVGFHGRAGNALNALGAYF 132
Jacalin cd09612
Jacalin-like plant lectin domain; Jacalin-like lectins are sugar-binding protein domains ...
 314-445 2.41e-46

Jacalin-like plant lectin domain; Jacalin-like lectins are sugar-binding protein domains mostly found in plants. They adopt a beta-prism topology consistent with a circularly permuted three-fold repeat of a structural motif. Proteins containing this domain may bind mono- or oligosaccharides with high specificity. The domain can occur in tandem-repeat arrangements with up to six copies, and in architectures combined with a variety of other functional domains. The family was initially named after an abundant protein found in the jackfruit seed. Jacalin specifically binds to the alpha-O-glycoside of the disaccharide Gal-beta1-3-GalNAc, and has proven useful in the study of O-linked glycoproteins. Jacalin-like lectins in this family may occur in various oligomerization states.


Pssm-ID: 187708 [Multi-domain]  Cd Length: 130  Bit Score: 156.57  E-value: 2.41e-46
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225232 314 GESWDDGAF-DGVRKIYVGQGENGIASVKFVYDKNNQLVLGEEHGKHTLlGYEEFELDYPSEYITAVEGYYDKVFGSEss 392
Cdd:cd09612   1 GSAWDDGVFpDGLRKITVRSGENGIDSIKFEYDKDGQHVVGPWHGGGGG-TPEEIVLDYPDEYITSVSGTYGPVSGSN-- 77

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|...
gi 15225232 393 VIVMLKFKTNKRTSPPYGMDAGVSFILGKEGHKVVGFHGKASPELYQIGVTVA 445
Cdd:cd09612  78 VITSLTFKTNKRTYGPFGVESGTPFSLPVEGGKIVGFHGRSGDYLDAIGVYVS 130
Jacalin smart00915
Jacalin-like lectin domain; This entry represents a mannose-binding lectin domain with a ...
 314-446 7.77e-46

Jacalin-like lectin domain; This entry represents a mannose-binding lectin domain with a beta-prism fold consisting of three 4-stranded beta-sheets, with an internal pseudo 3-fold symmetry. Some lectins in this group stimulate distinct T- and B- cell functions, such as Jacalin, which binds to the T-antigen and acts as an agglutinin. This domain is found in 1 to 6 copies in lectins. The domain is also found in the salt-stress induced protein from rice and an animal prostatic spermine-binding protein.


Pssm-ID: 214909 [Multi-domain]  Cd Length: 128  Bit Score: 155.08  E-value: 7.77e-46
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225232    314 GESWDDGAFDGVRKIYVGQGENGIASVKFVYDKnNQLVLGEEHGKHTLLGyeEFELDYPSEYITAVEGYYDKvfgseSSV 393
Cdd:smart00915   1 GTEWDDGAFDGVRKIYVGQGGEGIKSIQFDYDK-GGKVWGDEHGGKGGTG--EEILLYPGEYITSVEGTYDK-----SGV 72

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 15225232    394 IVMLKFKTNK-RTSPPYGMDAGVSFILG-KEGHKVVGFHG-KASPELYQIGVTVAP 446
Cdd:smart00915  73 ITSLTFKTNKgRTSPFGGYEGGTKFVLEsKEGKKIVGFHGrSSGDGLDSLGAYFSP 128
Jacalin pfam01419
Jacalin-like lectin domain; Proteins containing this domain are lectins. It is found in 1 to 6 ...
 13-144 1.40e-44

Jacalin-like lectin domain; Proteins containing this domain are lectins. It is found in 1 to 6 copies in these proteins. The domain is also found in the animal prostatic spermine-binding protein.


Pssm-ID: 396138 [Multi-domain]  Cd Length: 134  Bit Score: 152.05  E-value: 1.40e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225232    13 GNQWDDGaDHENVTKIHVRGGLEGIQFIKFEYVKAGQTVVGPIHGVSGKGFTQTFEINHLNgEHVVSVKGCYDNI----S 88
Cdd:pfam01419   1 GASWDDG-VYDGVRKVYVGQGGDGITYIKFEYVKGGGKVEGDEHGKKGLLGPEEFEIDYPD-EYITSVEGTYDKVfgsdS 78

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 15225232    89 GVIQALQFETN-QRSSEVMGYdDTGTKFTLEISGNKITGFHGSADANLKSLGAYFTP 144
Cdd:pfam01419  79 EVITSLTFKTNkGRTSPFFGT-PSGTKFSLEVKGKKIVGFHGRAGNALNALGAYFAP 134
Jacalin smart00915
Jacalin-like lectin domain; This entry represents a mannose-binding lectin domain with a ...
 13-144 6.02e-44

Jacalin-like lectin domain; This entry represents a mannose-binding lectin domain with a beta-prism fold consisting of three 4-stranded beta-sheets, with an internal pseudo 3-fold symmetry. Some lectins in this group stimulate distinct T- and B- cell functions, such as Jacalin, which binds to the T-antigen and acts as an agglutinin. This domain is found in 1 to 6 copies in lectins. The domain is also found in the salt-stress induced protein from rice and an animal prostatic spermine-binding protein.


Pssm-ID: 214909 [Multi-domain]  Cd Length: 128  Bit Score: 150.07  E-value: 6.02e-44
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225232     13 GNQWDDGaDHENVTKIHVRGGLEGIQFIKFEYVKaGQTVVGPIHGVSGkgfTQTFEINHLNGEHVVSVKGCYDNiSGVIQ 92
Cdd:smart00915   1 GTEWDDG-AFDGVRKIYVGQGGEGIKSIQFDYDK-GGKVWGDEHGGKG---GTGEEILLYPGEYITSVEGTYDK-SGVIT 74

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 15225232     93 ALQFETNQ-RSSEVMGYdDTGTKFTLEI-SGNKITGFHG-SADANLKSLGAYFTP 144
Cdd:smart00915  75 SLTFKTNKgRTSPFGGY-EGGTKFVLESkEGKKIVGFHGrSSGDGLDSLGAYFSP 128
PLN02193 PLN02193
nitrile-specifier protein
 304-445 1.03e-41

nitrile-specifier protein


Pssm-ID: 177844 [Multi-domain]  Cd Length: 470  Bit Score: 153.96  E-value: 1.03e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225232  304 EKLQGSGGDGGESWDDGAFDGVRKIYVGQGENGIASVKFVYDKNNQLVLGEEHGKHTLLGYEEFELDyPSEYITAVEGYY 383
Cdd:PLN02193   3 QKLEAKGGETGDVWDDGVYDNVRKVYVGQGQYGIAFVKFEYVNGSQVVVGDEHGKKTELGVEEFEID-ADDYIVYVEGYR 81

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15225232  384 DKVFGSESSVIVMLKFKTNK-RTSPPYGMDAGVSFILgkEGHKVVGFHGKASPELYQIGVTVA 445
Cdd:PLN02193  82 EKVNDMTSEMITFLSFKTYKgKTSHPIEKRPGVKFVL--QGGKIVGFHGRSTDVLHSLGAYIS 142
Jacalin cd09612
Jacalin-like plant lectin domain; Jacalin-like lectins are sugar-binding protein domains ...
 13-143 2.71e-39

Jacalin-like plant lectin domain; Jacalin-like lectins are sugar-binding protein domains mostly found in plants. They adopt a beta-prism topology consistent with a circularly permuted three-fold repeat of a structural motif. Proteins containing this domain may bind mono- or oligosaccharides with high specificity. The domain can occur in tandem-repeat arrangements with up to six copies, and in architectures combined with a variety of other functional domains. The family was initially named after an abundant protein found in the jackfruit seed. Jacalin specifically binds to the alpha-O-glycoside of the disaccharide Gal-beta1-3-GalNAc, and has proven useful in the study of O-linked glycoproteins. Jacalin-like lectins in this family may occur in various oligomerization states.


Pssm-ID: 187708 [Multi-domain]  Cd Length: 130  Bit Score: 138.08  E-value: 2.71e-39
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225232  13 GNQWDDGADHENVTKIHVRGGLEGIQFIKFEYVKAGQTVVGPIHGVSGkGFTQTFEINHlNGEHVVSVKGCYDNISG--V 90
Cdd:cd09612   1 GSAWDDGVFPDGLRKITVRSGENGIDSIKFEYDKDGQHVVGPWHGGGG-GTPEEIVLDY-PDEYITSVSGTYGPVSGsnV 78

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|...
gi 15225232  91 IQALQFETNQRSSEVMGYdDTGTKFTLEISGNKITGFHGSADANLKSLGAYFT 143
Cdd:cd09612  79 ITSLTFKTNKRTYGPFGV-ESGTPFSLPVEGGKIVGFHGRSGDYLDAIGVYVS 130
Jacalin smart00915
Jacalin-like lectin domain; This entry represents a mannose-binding lectin domain with a ...
 158-293 4.12e-39

Jacalin-like lectin domain; This entry represents a mannose-binding lectin domain with a beta-prism fold consisting of three 4-stranded beta-sheets, with an internal pseudo 3-fold symmetry. Some lectins in this group stimulate distinct T- and B- cell functions, such as Jacalin, which binds to the T-antigen and acts as an agglutinin. This domain is found in 1 to 6 copies in lectins. The domain is also found in the salt-stress induced protein from rice and an animal prostatic spermine-binding protein.


Pssm-ID: 214909 [Multi-domain]  Cd Length: 128  Bit Score: 137.36  E-value: 4.12e-39
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225232    158 GSPWDHGIYTGIRKVYVTFSPVSISHIKVDYDKDGKVETRQDGDMLGEnrvqgqpNEFVVDYPYEYITSIEVTCDKvsgn 237
Cdd:smart00915   1 GTEWDDGAFDGVRKIYVGQGGEGIKSIQFDYDKGGKVWGDEHGGKGGT-------GEEILLYPGEYITSVEGTYDK---- 69

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 15225232    238 TNRVRSLSFKTSKDRTSPTYGRKSERTFVFESK-GRALVGLHGRC-CWAIDALGAHFG 293
Cdd:smart00915  70 SGVITSLTFKTNKGRTSPFGGYEGGTKFVLESKeGKKIVGFHGRSsGDGLDSLGAYFS 127
Jacalin cd09612
Jacalin-like plant lectin domain; Jacalin-like lectins are sugar-binding protein domains ...
 158-292 5.99e-37

Jacalin-like plant lectin domain; Jacalin-like lectins are sugar-binding protein domains mostly found in plants. They adopt a beta-prism topology consistent with a circularly permuted three-fold repeat of a structural motif. Proteins containing this domain may bind mono- or oligosaccharides with high specificity. The domain can occur in tandem-repeat arrangements with up to six copies, and in architectures combined with a variety of other functional domains. The family was initially named after an abundant protein found in the jackfruit seed. Jacalin specifically binds to the alpha-O-glycoside of the disaccharide Gal-beta1-3-GalNAc, and has proven useful in the study of O-linked glycoproteins. Jacalin-like lectins in this family may occur in various oligomerization states.


Pssm-ID: 187708 [Multi-domain]  Cd Length: 130  Bit Score: 131.53  E-value: 5.99e-37
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225232 158 GSPWDHGIY-TGIRKVYVTFSPVSISHIKVDYDKDGK-VETRQDGDMlgenrvQGQPNEFVVDYPYEYITSIEVTCDKVS 235
Cdd:cd09612   1 GSAWDDGVFpDGLRKITVRSGENGIDSIKFEYDKDGQhVVGPWHGGG------GGTPEEIVLDYPDEYITSVSGTYGPVS 74

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*..
gi 15225232 236 GNtNRVRSLSFKTSKdRTSPTYGRKSERTFVFESKGRALVGLHGRCCWAIDALGAHF 292
Cdd:cd09612  75 GS-NVITSLTFKTNK-RTYGPFGVESGTPFSLPVEGGKIVGFHGRSGDYLDAIGVYV 129
PLN02193 PLN02193
nitrile-specifier protein
 1-173 8.28e-26

nitrile-specifier protein


Pssm-ID: 177844 [Multi-domain]  Cd Length: 470  Bit Score: 109.27  E-value: 8.28e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225232    1 MAQRLEAKGGKGGNQWDDGAdHENVTKIHVRGGLEGIQFIKFEYVKAGQTVVGPIHGVSGKGFTQTFEINhlNGEHVVSV 80
Cdd:PLN02193   1 MAQKLEAKGGETGDVWDDGV-YDNVRKVYVGQGQYGIAFVKFEYVNGSQVVVGDEHGKKTELGVEEFEID--ADDYIVYV 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225232   81 KGCYDNISGV----IQALQFETNQRSSEVMGYDDTGTKFTLEisGNKITGFHGSADANLKSLGAYFTPPPP-------IK 149
Cdd:PLN02193  78 EGYREKVNDMtsemITFLSFKTYKGKTSHPIEKRPGVKFVLQ--GGKIVGFHGRSTDVLHSLGAYISLPSTpkllgkwIK 155

                        170       180
                 ....*....|....*....|....
gi 15225232  150 QEYQGGTGGSPWDHGIYTGIRKVY 173
Cdd:PLN02193 156 VEQKGEGPGLRCSHGIAQVGNKIY 179
 
Name Accession Description Interval E-value
Jacalin pfam01419
Jacalin-like lectin domain; Proteins containing this domain are lectins. It is found in 1 to 6 ...
 314-446 7.92e-64

Jacalin-like lectin domain; Proteins containing this domain are lectins. It is found in 1 to 6 copies in these proteins. The domain is also found in the animal prostatic spermine-binding protein.


Pssm-ID: 396138 [Multi-domain]  Cd Length: 134  Bit Score: 202.12  E-value: 7.92e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225232   314 GESWDDGAFDGVRKIYVGQGENGIASVKFVYDKNNQLVLGEEHGKHTLLGYEEFELDYPSEYITAVEGYYDKVFGSESSV 393
Cdd:pfam01419   1 GASWDDGVYDGVRKVYVGQGGDGITYIKFEYVKGGGKVEGDEHGKKGLLGPEEFEIDYPDEYITSVEGTYDKVFGSDSEV 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 15225232   394 IVMLKFKTNK-RTSPPYGMDAGVSFILGKEGHKVVGFHGKASPELYQIGVTVAP 446
Cdd:pfam01419  81 ITSLTFKTNKgRTSPFFGTPSGTKFSLEVKGKKIVGFHGRAGNALNALGAYFAP 134
Jacalin pfam01419
Jacalin-like lectin domain; Proteins containing this domain are lectins. It is found in 1 to 6 ...
 158-292 1.02e-46

Jacalin-like lectin domain; Proteins containing this domain are lectins. It is found in 1 to 6 copies in these proteins. The domain is also found in the animal prostatic spermine-binding protein.


Pssm-ID: 396138 [Multi-domain]  Cd Length: 134  Bit Score: 157.82  E-value: 1.02e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225232   158 GSPWDHGIYTGIRKVYVTFSPVSISHIKVDYDK-DGKVETRQDGDMLGenrvqGQPNEFVVDYPYEYITSIEVTCDKV-S 235
Cdd:pfam01419   1 GASWDDGVYDGVRKVYVGQGGDGITYIKFEYVKgGGKVEGDEHGKKGL-----LGPEEFEIDYPDEYITSVEGTYDKVfG 75

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 15225232   236 GNTNRVRSLSFKTSKDRTSPTYGRKSERTFVFESKGRALVGLHGRCCWAIDALGAHF 292
Cdd:pfam01419  76 SDSEVITSLTFKTNKGRTSPFFGTPSGTKFSLEVKGKKIVGFHGRAGNALNALGAYF 132
Jacalin cd09612
Jacalin-like plant lectin domain; Jacalin-like lectins are sugar-binding protein domains ...
 314-445 2.41e-46

Jacalin-like plant lectin domain; Jacalin-like lectins are sugar-binding protein domains mostly found in plants. They adopt a beta-prism topology consistent with a circularly permuted three-fold repeat of a structural motif. Proteins containing this domain may bind mono- or oligosaccharides with high specificity. The domain can occur in tandem-repeat arrangements with up to six copies, and in architectures combined with a variety of other functional domains. The family was initially named after an abundant protein found in the jackfruit seed. Jacalin specifically binds to the alpha-O-glycoside of the disaccharide Gal-beta1-3-GalNAc, and has proven useful in the study of O-linked glycoproteins. Jacalin-like lectins in this family may occur in various oligomerization states.


Pssm-ID: 187708 [Multi-domain]  Cd Length: 130  Bit Score: 156.57  E-value: 2.41e-46
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225232 314 GESWDDGAF-DGVRKIYVGQGENGIASVKFVYDKNNQLVLGEEHGKHTLlGYEEFELDYPSEYITAVEGYYDKVFGSEss 392
Cdd:cd09612   1 GSAWDDGVFpDGLRKITVRSGENGIDSIKFEYDKDGQHVVGPWHGGGGG-TPEEIVLDYPDEYITSVSGTYGPVSGSN-- 77

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|...
gi 15225232 393 VIVMLKFKTNKRTSPPYGMDAGVSFILGKEGHKVVGFHGKASPELYQIGVTVA 445
Cdd:cd09612  78 VITSLTFKTNKRTYGPFGVESGTPFSLPVEGGKIVGFHGRSGDYLDAIGVYVS 130
Jacalin smart00915
Jacalin-like lectin domain; This entry represents a mannose-binding lectin domain with a ...
 314-446 7.77e-46

Jacalin-like lectin domain; This entry represents a mannose-binding lectin domain with a beta-prism fold consisting of three 4-stranded beta-sheets, with an internal pseudo 3-fold symmetry. Some lectins in this group stimulate distinct T- and B- cell functions, such as Jacalin, which binds to the T-antigen and acts as an agglutinin. This domain is found in 1 to 6 copies in lectins. The domain is also found in the salt-stress induced protein from rice and an animal prostatic spermine-binding protein.


Pssm-ID: 214909 [Multi-domain]  Cd Length: 128  Bit Score: 155.08  E-value: 7.77e-46
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225232    314 GESWDDGAFDGVRKIYVGQGENGIASVKFVYDKnNQLVLGEEHGKHTLLGyeEFELDYPSEYITAVEGYYDKvfgseSSV 393
Cdd:smart00915   1 GTEWDDGAFDGVRKIYVGQGGEGIKSIQFDYDK-GGKVWGDEHGGKGGTG--EEILLYPGEYITSVEGTYDK-----SGV 72

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 15225232    394 IVMLKFKTNK-RTSPPYGMDAGVSFILG-KEGHKVVGFHG-KASPELYQIGVTVAP 446
Cdd:smart00915  73 ITSLTFKTNKgRTSPFGGYEGGTKFVLEsKEGKKIVGFHGrSSGDGLDSLGAYFSP 128
Jacalin pfam01419
Jacalin-like lectin domain; Proteins containing this domain are lectins. It is found in 1 to 6 ...
 13-144 1.40e-44

Jacalin-like lectin domain; Proteins containing this domain are lectins. It is found in 1 to 6 copies in these proteins. The domain is also found in the animal prostatic spermine-binding protein.


Pssm-ID: 396138 [Multi-domain]  Cd Length: 134  Bit Score: 152.05  E-value: 1.40e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225232    13 GNQWDDGaDHENVTKIHVRGGLEGIQFIKFEYVKAGQTVVGPIHGVSGKGFTQTFEINHLNgEHVVSVKGCYDNI----S 88
Cdd:pfam01419   1 GASWDDG-VYDGVRKVYVGQGGDGITYIKFEYVKGGGKVEGDEHGKKGLLGPEEFEIDYPD-EYITSVEGTYDKVfgsdS 78

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 15225232    89 GVIQALQFETN-QRSSEVMGYdDTGTKFTLEISGNKITGFHGSADANLKSLGAYFTP 144
Cdd:pfam01419  79 EVITSLTFKTNkGRTSPFFGT-PSGTKFSLEVKGKKIVGFHGRAGNALNALGAYFAP 134
Jacalin smart00915
Jacalin-like lectin domain; This entry represents a mannose-binding lectin domain with a ...
 13-144 6.02e-44

Jacalin-like lectin domain; This entry represents a mannose-binding lectin domain with a beta-prism fold consisting of three 4-stranded beta-sheets, with an internal pseudo 3-fold symmetry. Some lectins in this group stimulate distinct T- and B- cell functions, such as Jacalin, which binds to the T-antigen and acts as an agglutinin. This domain is found in 1 to 6 copies in lectins. The domain is also found in the salt-stress induced protein from rice and an animal prostatic spermine-binding protein.


Pssm-ID: 214909 [Multi-domain]  Cd Length: 128  Bit Score: 150.07  E-value: 6.02e-44
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225232     13 GNQWDDGaDHENVTKIHVRGGLEGIQFIKFEYVKaGQTVVGPIHGVSGkgfTQTFEINHLNGEHVVSVKGCYDNiSGVIQ 92
Cdd:smart00915   1 GTEWDDG-AFDGVRKIYVGQGGEGIKSIQFDYDK-GGKVWGDEHGGKG---GTGEEILLYPGEYITSVEGTYDK-SGVIT 74

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 15225232     93 ALQFETNQ-RSSEVMGYdDTGTKFTLEI-SGNKITGFHG-SADANLKSLGAYFTP 144
Cdd:smart00915  75 SLTFKTNKgRTSPFGGY-EGGTKFVLESkEGKKIVGFHGrSSGDGLDSLGAYFSP 128
PLN02193 PLN02193
nitrile-specifier protein
 304-445 1.03e-41

nitrile-specifier protein


Pssm-ID: 177844 [Multi-domain]  Cd Length: 470  Bit Score: 153.96  E-value: 1.03e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225232  304 EKLQGSGGDGGESWDDGAFDGVRKIYVGQGENGIASVKFVYDKNNQLVLGEEHGKHTLLGYEEFELDyPSEYITAVEGYY 383
Cdd:PLN02193   3 QKLEAKGGETGDVWDDGVYDNVRKVYVGQGQYGIAFVKFEYVNGSQVVVGDEHGKKTELGVEEFEID-ADDYIVYVEGYR 81

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15225232  384 DKVFGSESSVIVMLKFKTNK-RTSPPYGMDAGVSFILgkEGHKVVGFHGKASPELYQIGVTVA 445
Cdd:PLN02193  82 EKVNDMTSEMITFLSFKTYKgKTSHPIEKRPGVKFVL--QGGKIVGFHGRSTDVLHSLGAYIS 142
Jacalin cd09612
Jacalin-like plant lectin domain; Jacalin-like lectins are sugar-binding protein domains ...
 13-143 2.71e-39

Jacalin-like plant lectin domain; Jacalin-like lectins are sugar-binding protein domains mostly found in plants. They adopt a beta-prism topology consistent with a circularly permuted three-fold repeat of a structural motif. Proteins containing this domain may bind mono- or oligosaccharides with high specificity. The domain can occur in tandem-repeat arrangements with up to six copies, and in architectures combined with a variety of other functional domains. The family was initially named after an abundant protein found in the jackfruit seed. Jacalin specifically binds to the alpha-O-glycoside of the disaccharide Gal-beta1-3-GalNAc, and has proven useful in the study of O-linked glycoproteins. Jacalin-like lectins in this family may occur in various oligomerization states.


Pssm-ID: 187708 [Multi-domain]  Cd Length: 130  Bit Score: 138.08  E-value: 2.71e-39
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225232  13 GNQWDDGADHENVTKIHVRGGLEGIQFIKFEYVKAGQTVVGPIHGVSGkGFTQTFEINHlNGEHVVSVKGCYDNISG--V 90
Cdd:cd09612   1 GSAWDDGVFPDGLRKITVRSGENGIDSIKFEYDKDGQHVVGPWHGGGG-GTPEEIVLDY-PDEYITSVSGTYGPVSGsnV 78

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|...
gi 15225232  91 IQALQFETNQRSSEVMGYdDTGTKFTLEISGNKITGFHGSADANLKSLGAYFT 143
Cdd:cd09612  79 ITSLTFKTNKRTYGPFGV-ESGTPFSLPVEGGKIVGFHGRSGDYLDAIGVYVS 130
Jacalin smart00915
Jacalin-like lectin domain; This entry represents a mannose-binding lectin domain with a ...
 158-293 4.12e-39

Jacalin-like lectin domain; This entry represents a mannose-binding lectin domain with a beta-prism fold consisting of three 4-stranded beta-sheets, with an internal pseudo 3-fold symmetry. Some lectins in this group stimulate distinct T- and B- cell functions, such as Jacalin, which binds to the T-antigen and acts as an agglutinin. This domain is found in 1 to 6 copies in lectins. The domain is also found in the salt-stress induced protein from rice and an animal prostatic spermine-binding protein.


Pssm-ID: 214909 [Multi-domain]  Cd Length: 128  Bit Score: 137.36  E-value: 4.12e-39
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225232    158 GSPWDHGIYTGIRKVYVTFSPVSISHIKVDYDKDGKVETRQDGDMLGEnrvqgqpNEFVVDYPYEYITSIEVTCDKvsgn 237
Cdd:smart00915   1 GTEWDDGAFDGVRKIYVGQGGEGIKSIQFDYDKGGKVWGDEHGGKGGT-------GEEILLYPGEYITSVEGTYDK---- 69

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 15225232    238 TNRVRSLSFKTSKDRTSPTYGRKSERTFVFESK-GRALVGLHGRC-CWAIDALGAHFG 293
Cdd:smart00915  70 SGVITSLTFKTNKGRTSPFGGYEGGTKFVLESKeGKKIVGFHGRSsGDGLDSLGAYFS 127
Jacalin cd09612
Jacalin-like plant lectin domain; Jacalin-like lectins are sugar-binding protein domains ...
 158-292 5.99e-37

Jacalin-like plant lectin domain; Jacalin-like lectins are sugar-binding protein domains mostly found in plants. They adopt a beta-prism topology consistent with a circularly permuted three-fold repeat of a structural motif. Proteins containing this domain may bind mono- or oligosaccharides with high specificity. The domain can occur in tandem-repeat arrangements with up to six copies, and in architectures combined with a variety of other functional domains. The family was initially named after an abundant protein found in the jackfruit seed. Jacalin specifically binds to the alpha-O-glycoside of the disaccharide Gal-beta1-3-GalNAc, and has proven useful in the study of O-linked glycoproteins. Jacalin-like lectins in this family may occur in various oligomerization states.


Pssm-ID: 187708 [Multi-domain]  Cd Length: 130  Bit Score: 131.53  E-value: 5.99e-37
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225232 158 GSPWDHGIY-TGIRKVYVTFSPVSISHIKVDYDKDGK-VETRQDGDMlgenrvQGQPNEFVVDYPYEYITSIEVTCDKVS 235
Cdd:cd09612   1 GSAWDDGVFpDGLRKITVRSGENGIDSIKFEYDKDGQhVVGPWHGGG------GGTPEEIVLDYPDEYITSVSGTYGPVS 74

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*..
gi 15225232 236 GNtNRVRSLSFKTSKdRTSPTYGRKSERTFVFESKGRALVGLHGRCCWAIDALGAHF 292
Cdd:cd09612  75 GS-NVITSLTFKTNK-RTYGPFGVESGTPFSLPVEGGKIVGFHGRSGDYLDAIGVYV 129
PLN02193 PLN02193
nitrile-specifier protein
 1-173 8.28e-26

nitrile-specifier protein


Pssm-ID: 177844 [Multi-domain]  Cd Length: 470  Bit Score: 109.27  E-value: 8.28e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225232    1 MAQRLEAKGGKGGNQWDDGAdHENVTKIHVRGGLEGIQFIKFEYVKAGQTVVGPIHGVSGKGFTQTFEINhlNGEHVVSV 80
Cdd:PLN02193   1 MAQKLEAKGGETGDVWDDGV-YDNVRKVYVGQGQYGIAFVKFEYVNGSQVVVGDEHGKKTELGVEEFEID--ADDYIVYV 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225232   81 KGCYDNISGV----IQALQFETNQRSSEVMGYDDTGTKFTLEisGNKITGFHGSADANLKSLGAYFTPPPP-------IK 149
Cdd:PLN02193  78 EGYREKVNDMtsemITFLSFKTYKGKTSHPIEKRPGVKFVLQ--GGKIVGFHGRSTDVLHSLGAYISLPSTpkllgkwIK 155

                        170       180
                 ....*....|....*....|....
gi 15225232  150 QEYQGGTGGSPWDHGIYTGIRKVY 173
Cdd:PLN02193 156 VEQKGEGPGLRCSHGIAQVGNKIY 179
Jacalin_like cd09302
Jacalin-like lectin domain; Jacalin-like lectins are sugar-binding protein domains mostly ...
 17-139 5.08e-07

Jacalin-like lectin domain; Jacalin-like lectins are sugar-binding protein domains mostly found in plants. They adopt a beta-prism topology consistent with a circularly permuted three-fold repeat of a structural motif. Proteins containing this domain may bind mono- or oligosaccharides with high specificity. The domain can occur in tandem-repeat arrangements with up to six copies, and in architectures combined with a variety of other functional domains. Taxonomic distribution is not restricted to plants, the domain is also found in various mammalian proteins, for example.


Pssm-ID: 187706  Cd Length: 128  Bit Score: 48.55  E-value: 5.08e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225232  17 DDGADHENVTKIHVRGG--LEGIQFiKFEyvkagqTVVGPIHGvsGKGFTQTFEINHLNGEHVVSVKGCYDNISGV--IQ 92
Cdd:cd09302   6 DTGGDGARLTEIRVRSGgaVDAIRV-VLR------DYTDGRHG--GNGGPNTSSVFLDPGEYITITSVSSGDNGGGtrID 76

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*...
gi 15225232  93 ALQFETNQRSSEVMGYDDTGTKFTLEI-SGNKITGFHGSADANLKSLG 139
Cdd:cd09302  77 AIQFTTNKGRSGTYGTTSGALGTEFTVpVGGEIVGIYGRAGDDVDAFG 124
griffithsin_like cd09614
Jacalin-like lectin domain of griffithsin and related proteins; Griffithsin is a lectin ...
 10-143 2.61e-05

Jacalin-like lectin domain of griffithsin and related proteins; Griffithsin is a lectin isolated from a red alga, which has shown potential as an inhibitor of viral entry, exhibiting antiviral activity against HIV and SARS. The biological functions of griffithsin and griffithsin-like proteins with respect to their source organisms are not known.


Pssm-ID: 187710  Cd Length: 128  Bit Score: 43.54  E-value: 2.61e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225232  10 GKGGNQWDDgADHENVTKIHVRGG--LEGIQFIkFEYVKAGQTVVgpiHGVSGKGFTQTFEInhLNGEHVVSVKGCYdni 87
Cdd:cd09614   1 GFGGSPGSD-FDILTVSAIQLRSGsyVDQIITD-YQDLNGTQNFH---HGGGGGNLSPTLNF--SSGEYITEVTGRS--- 70

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*..
gi 15225232  88 SGVIQALQFETNQRSSEVMGYDDTGTKFTLEISGN-KITGFHGSADANLKSLGAYFT 143
Cdd:cd09614  71 GDRVDQVQFTTNYGGRTLPGGGGGGSAFTWTVPDNqKVIGFAGRSGSYLDQLQVYYL 127
Jacalin_like cd09302
Jacalin-like lectin domain; Jacalin-like lectins are sugar-binding protein domains mostly ...
 314-445 3.34e-05

Jacalin-like lectin domain; Jacalin-like lectins are sugar-binding protein domains mostly found in plants. They adopt a beta-prism topology consistent with a circularly permuted three-fold repeat of a structural motif. Proteins containing this domain may bind mono- or oligosaccharides with high specificity. The domain can occur in tandem-repeat arrangements with up to six copies, and in architectures combined with a variety of other functional domains. Taxonomic distribution is not restricted to plants, the domain is also found in various mammalian proteins, for example.


Pssm-ID: 187706  Cd Length: 128  Bit Score: 43.16  E-value: 3.34e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225232 314 GESWDDGAFDG--VRKIYVGQGeNGIASVKFVYDKNNQLVLGEEHGKHTllgyEEFELDyPSEYITAVEGYYDKVFGSEs 391
Cdd:cd09302   1 GKPFSDTGGDGarLTEIRVRSG-GAVDAIRVVLRDYTDGRHGGNGGPNT----SSVFLD-PGEYITITSVSSGDNGGGT- 73

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*..
gi 15225232 392 sVIVMLKFKTNKRTSPPYGM---DAGVSFILGkEGHKVVGFHGKASPELYQIGVTVA 445
Cdd:cd09302  74 -RIDAIQFTTNKGRSGTYGTtsgALGTEFTVP-VGGEIVGIYGRAGDDVDAFGFILS 128
Jacalin_ZG16_like cd09611
Jacalin-like lectin domain of the zymogen granule protein 16 and related proteins; ZG16p is a ...
 310-435 6.55e-05

Jacalin-like lectin domain of the zymogen granule protein 16 and related proteins; ZG16p is a conserved secreted vertebrate protein with tissue-specific expression profiles, which might play a role in glycoprotein secretion, perhaps as a linker protein that participates in the formation and/or transport of the zymogen granule. Its paralog ZG16b (PAUF) has been associated with roles in gene regulation and cancer. This domain family also contains mammalian proteins labelled as prostatic spermine-binding protein (SBP) and salivary-gland specific secreted proteins.


Pssm-ID: 187707 [Multi-domain]  Cd Length: 128  Bit Score: 42.31  E-value: 6.55e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225232 310 GGDGGESWDDGAFDG--VRKIYVGQGENGIASVKFVYDKNNQLVLGEEHGKHtllgyEEFELDyPSEYITAVEGYYDkvf 387
Cdd:cd09611   1 GSGGGKYFSDVGEGGgpITGIRVSVGNNYIKGIQVRYGSNWSDVYGGRGGNE-----QEIVLE-PGESITKVSGSYK--- 71

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|
gi 15225232 388 gsesSVIVMLKFKTNKRTSPPYGMDAGVSFI--LGKEGHKVVGFHGKASP 435
Cdd:cd09611  72 ----IYLHGLVFTTNKGRYLSFGKLRGRSFNatPPPSNYVLRGISGRYGG 117
Jacalin_like cd09302
Jacalin-like lectin domain; Jacalin-like lectins are sugar-binding protein domains mostly ...
 220-289 1.47e-04

Jacalin-like lectin domain; Jacalin-like lectins are sugar-binding protein domains mostly found in plants. They adopt a beta-prism topology consistent with a circularly permuted three-fold repeat of a structural motif. Proteins containing this domain may bind mono- or oligosaccharides with high specificity. The domain can occur in tandem-repeat arrangements with up to six copies, and in architectures combined with a variety of other functional domains. Taxonomic distribution is not restricted to plants, the domain is also found in various mammalian proteins, for example.


Pssm-ID: 187706  Cd Length: 128  Bit Score: 41.62  E-value: 1.47e-04
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15225232 220 PYEYITSIEVTCDkVSGNTNRVRSLSFKTSKdRTSPTYGRKSE---RTFVFESkGRALVGLHGRCCWAIDALG 289
Cdd:cd09302  55 PGEYITITSVSSG-DNGGGTRIDAIQFTTNK-GRSGTYGTTSGalgTEFTVPV-GGEIVGIYGRAGDDVDAFG 124
Jacalin_EEP cd09615
Jacalin-like lectin domains of putative endonucleases/exonucleases/phosphatases and related ...
 222-293 3.79e-04

Jacalin-like lectin domains of putative endonucleases/exonucleases/phosphatases and related proteins; Members of this taxonomically diverse family co-occur with metal-dependent endonucleases/exonucleases/phosphatases. They have not been functionally characterized.


Pssm-ID: 187711  Cd Length: 134  Bit Score: 40.46  E-value: 3.79e-04
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15225232 222 EYITSIEVTCDKVSGNTnRVRSLSFKTSKDRTSPTYGRKSERTFVFESKGRALVGLHGRCCWAIDALGAHFG 293
Cdd:cd09615  62 EYLTSATLCQGQKNGHT-RIFYASFTTSTGRTLAGGTTTSDCVTYTAPEGWQIVGFHGRAGDEVDKLGVIYA 132
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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