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Conserved domains on  [gi|42569284|ref|NP_180007|]
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Calmodulin-binding protein [Arabidopsis thaliana]

Protein Classification

ACBP60 family protein( domain architecture ID 10545878)

ACBP60 family protein similar to protein SAR DEFICIENT 1 and calmodulin-binding protein 60, which are transcription activators that bind DNA in a sequence-specific manner, likely 5'-GAAATTTTGG-3', to promote the expression of target genes

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Calmodulin_bind pfam07887
Calmodulin binding protein-like N-terminal domain; The members of this family are putative or ...
 42-189 9.15e-77

Calmodulin binding protein-like N-terminal domain; The members of this family are putative or actual calmodulin binding proteins expressed by various plant species. Some members (for example, Swiss:Q8H6T7), are known to be involved in the induction of plant defence responses. However, their precise function in this regards is as yet unknown.


:

Pssm-ID: 462302  Cd Length: 147  Bit Score: 238.97  E-value: 9.15e-77
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42569284    42 LQLHFRTRMPPHLFTGGKVEGERGSAIHVVLIDANTGNVVQTGEESASKLNVVVLEGDFNDEDDEDWTREHFESFEVKER 121
Cdd:pfam07887   1 LKLRFLNKLSLPIFTGSKIEDEDGNPLKIALVDANTGQVVTSGPLSSAKVEIVVLDGDFNSGDQENWTEEEFNSNIVKER 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 42569284   122 EGKRPILTGDTQIVLKEGVGTLGELTFTDNSSWIRSRKFRLGVKPASGYgDSFCIREAKTEPFAVKDH 189
Cdd:pfam07887  81 EGKRPLLTGDLTVTLKDGVASIGDISFTDNSSWIRSRKFRLGARVVPSC-DGVRIREAVTEPFVVKDH 147
Calmod_bind_M pfam20451
Calmodulin binding protein central domain; The members of this family are putative or actual ...
 201-267 5.77e-38

Calmodulin binding protein central domain; The members of this family are putative or actual calmodulin binding proteins expressed by various plant species. Some members are known to be involved in the induction of plant defence responses. However, their precise function in this regards is as yet unknown.


:

Pssm-ID: 466600  Cd Length: 67  Bit Score: 133.85  E-value: 5.77e-38
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 42569284   201 AVHDEVWRLDRIAKDGVLHKKLLKANIVTVEDFLRLLVKDPQKLRNLLGSGMSNRMWENTVEHAKTC 267
Cdd:pfam20451   1 ALDDEVWRLEKIGKDGAFHKRLSSEGINTVQDFLRLYVVDPQKLRKILGSGMSDKMWEVTVEHAKTC 67
Calmod_bind_C pfam20452
Calmodulin binding protein C-terminal domain; The members of this family are putative or ...
 272-334 7.02e-19

Calmodulin binding protein C-terminal domain; The members of this family are putative or actual calmodulin binding proteins expressed by various plant species. Some members are known to be involved in the induction of plant defence responses. However, their precise function in this regards is as yet unknown.


:

Pssm-ID: 466601  Cd Length: 62  Bit Score: 80.66  E-value: 7.02e-19
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 42569284   272 KLYVFYTDQTHaTGVVFNHIYEFRGLITNGQFLSLESLNHDQKISADILVKLAYENWHKAIEY 334
Cdd:pfam20452   1 KLYVYYVRGQN-VGLVFNSIYELVGVIIGGQYVSQDKLSETQKAYVDQLVKQAYENWDQLEEY 62
 
Name Accession Description Interval E-value
Calmodulin_bind pfam07887
Calmodulin binding protein-like N-terminal domain; The members of this family are putative or ...
 42-189 9.15e-77

Calmodulin binding protein-like N-terminal domain; The members of this family are putative or actual calmodulin binding proteins expressed by various plant species. Some members (for example, Swiss:Q8H6T7), are known to be involved in the induction of plant defence responses. However, their precise function in this regards is as yet unknown.


Pssm-ID: 462302  Cd Length: 147  Bit Score: 238.97  E-value: 9.15e-77
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42569284    42 LQLHFRTRMPPHLFTGGKVEGERGSAIHVVLIDANTGNVVQTGEESASKLNVVVLEGDFNDEDDEDWTREHFESFEVKER 121
Cdd:pfam07887   1 LKLRFLNKLSLPIFTGSKIEDEDGNPLKIALVDANTGQVVTSGPLSSAKVEIVVLDGDFNSGDQENWTEEEFNSNIVKER 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 42569284   122 EGKRPILTGDTQIVLKEGVGTLGELTFTDNSSWIRSRKFRLGVKPASGYgDSFCIREAKTEPFAVKDH 189
Cdd:pfam07887  81 EGKRPLLTGDLTVTLKDGVASIGDISFTDNSSWIRSRKFRLGARVVPSC-DGVRIREAVTEPFVVKDH 147
Calmod_bind_M pfam20451
Calmodulin binding protein central domain; The members of this family are putative or actual ...
 201-267 5.77e-38

Calmodulin binding protein central domain; The members of this family are putative or actual calmodulin binding proteins expressed by various plant species. Some members are known to be involved in the induction of plant defence responses. However, their precise function in this regards is as yet unknown.


Pssm-ID: 466600  Cd Length: 67  Bit Score: 133.85  E-value: 5.77e-38
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 42569284   201 AVHDEVWRLDRIAKDGVLHKKLLKANIVTVEDFLRLLVKDPQKLRNLLGSGMSNRMWENTVEHAKTC 267
Cdd:pfam20451   1 ALDDEVWRLEKIGKDGAFHKRLSSEGINTVQDFLRLYVVDPQKLRKILGSGMSDKMWEVTVEHAKTC 67
Calmod_bind_C pfam20452
Calmodulin binding protein C-terminal domain; The members of this family are putative or ...
 272-334 7.02e-19

Calmodulin binding protein C-terminal domain; The members of this family are putative or actual calmodulin binding proteins expressed by various plant species. Some members are known to be involved in the induction of plant defence responses. However, their precise function in this regards is as yet unknown.


Pssm-ID: 466601  Cd Length: 62  Bit Score: 80.66  E-value: 7.02e-19
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 42569284   272 KLYVFYTDQTHaTGVVFNHIYEFRGLITNGQFLSLESLNHDQKISADILVKLAYENWHKAIEY 334
Cdd:pfam20452   1 KLYVYYVRGQN-VGLVFNSIYELVGVIIGGQYVSQDKLSETQKAYVDQLVKQAYENWDQLEEY 62
 
Name Accession Description Interval E-value
Calmodulin_bind pfam07887
Calmodulin binding protein-like N-terminal domain; The members of this family are putative or ...
 42-189 9.15e-77

Calmodulin binding protein-like N-terminal domain; The members of this family are putative or actual calmodulin binding proteins expressed by various plant species. Some members (for example, Swiss:Q8H6T7), are known to be involved in the induction of plant defence responses. However, their precise function in this regards is as yet unknown.


Pssm-ID: 462302  Cd Length: 147  Bit Score: 238.97  E-value: 9.15e-77
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42569284    42 LQLHFRTRMPPHLFTGGKVEGERGSAIHVVLIDANTGNVVQTGEESASKLNVVVLEGDFNDEDDEDWTREHFESFEVKER 121
Cdd:pfam07887   1 LKLRFLNKLSLPIFTGSKIEDEDGNPLKIALVDANTGQVVTSGPLSSAKVEIVVLDGDFNSGDQENWTEEEFNSNIVKER 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 42569284   122 EGKRPILTGDTQIVLKEGVGTLGELTFTDNSSWIRSRKFRLGVKPASGYgDSFCIREAKTEPFAVKDH 189
Cdd:pfam07887  81 EGKRPLLTGDLTVTLKDGVASIGDISFTDNSSWIRSRKFRLGARVVPSC-DGVRIREAVTEPFVVKDH 147
Calmod_bind_M pfam20451
Calmodulin binding protein central domain; The members of this family are putative or actual ...
 201-267 5.77e-38

Calmodulin binding protein central domain; The members of this family are putative or actual calmodulin binding proteins expressed by various plant species. Some members are known to be involved in the induction of plant defence responses. However, their precise function in this regards is as yet unknown.


Pssm-ID: 466600  Cd Length: 67  Bit Score: 133.85  E-value: 5.77e-38
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 42569284   201 AVHDEVWRLDRIAKDGVLHKKLLKANIVTVEDFLRLLVKDPQKLRNLLGSGMSNRMWENTVEHAKTC 267
Cdd:pfam20451   1 ALDDEVWRLEKIGKDGAFHKRLSSEGINTVQDFLRLYVVDPQKLRKILGSGMSDKMWEVTVEHAKTC 67
Calmod_bind_C pfam20452
Calmodulin binding protein C-terminal domain; The members of this family are putative or ...
 272-334 7.02e-19

Calmodulin binding protein C-terminal domain; The members of this family are putative or actual calmodulin binding proteins expressed by various plant species. Some members are known to be involved in the induction of plant defence responses. However, their precise function in this regards is as yet unknown.


Pssm-ID: 466601  Cd Length: 62  Bit Score: 80.66  E-value: 7.02e-19
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 42569284   272 KLYVFYTDQTHaTGVVFNHIYEFRGLITNGQFLSLESLNHDQKISADILVKLAYENWHKAIEY 334
Cdd:pfam20452   1 KLYVYYVRGQN-VGLVFNSIYELVGVIIGGQYVSQDKLSETQKAYVDQLVKQAYENWDQLEEY 62
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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