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Conserved domains on  [gi|15227127|ref|NP_179791|]
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elicitor peptide 6 precursor [Arabidopsis thaliana]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Pep1_7 super family cl38522
Elicitor peptide 1-7; This entry include a group of elicitor peptides from plants, including ...
 20-100 1.12e-09

Elicitor peptide 1-7; This entry include a group of elicitor peptides from plants, including Arabidopsis AtPEP1-7. AtPEP1 activates transcription of the defensive gene defensin (PDF1.2) and activates the synthesis of H(2)O(2), both being components of the innate immune response.


The actual alignment was detected with superfamily member pfam17232:

Pssm-ID: 407349  Cd Length: 82  Bit Score: 50.49  E-value: 1.12e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227127    20 DYYYSLLNSPCSVCNKFVQAILKCLGLESSSIPPSSSSSSPslvEEEDSGTETVEETGFMARITAVlrrrPRPPPYSSGR 99
Cdd:pfam17232   9 DEVSYYLWIPFQFIHQILRSFLKCLGLESSSSNSPSSSSEE---DEEETETVEVTSRGVVVKVLKR----RPKPPPSSGK 81


                  .
gi 15227127   100 P 100
Cdd:pfam17232  82 P 82
 
Name Accession Description Interval E-value
Pep1_7 pfam17232
Elicitor peptide 1-7; This entry include a group of elicitor peptides from plants, including ...
 20-100 1.12e-09

Elicitor peptide 1-7; This entry include a group of elicitor peptides from plants, including Arabidopsis AtPEP1-7. AtPEP1 activates transcription of the defensive gene defensin (PDF1.2) and activates the synthesis of H(2)O(2), both being components of the innate immune response.


Pssm-ID: 407349  Cd Length: 82  Bit Score: 50.49  E-value: 1.12e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227127    20 DYYYSLLNSPCSVCNKFVQAILKCLGLESSSIPPSSSSSSPslvEEEDSGTETVEETGFMARITAVlrrrPRPPPYSSGR 99
Cdd:pfam17232   9 DEVSYYLWIPFQFIHQILRSFLKCLGLESSSSNSPSSSSEE---DEEETETVEVTSRGVVVKVLKR----RPKPPPSSGK 81


                  .
gi 15227127   100 P 100
Cdd:pfam17232  82 P 82
 
Name Accession Description Interval E-value
Pep1_7 pfam17232
Elicitor peptide 1-7; This entry include a group of elicitor peptides from plants, including ...
 20-100 1.12e-09

Elicitor peptide 1-7; This entry include a group of elicitor peptides from plants, including Arabidopsis AtPEP1-7. AtPEP1 activates transcription of the defensive gene defensin (PDF1.2) and activates the synthesis of H(2)O(2), both being components of the innate immune response.


Pssm-ID: 407349  Cd Length: 82  Bit Score: 50.49  E-value: 1.12e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227127    20 DYYYSLLNSPCSVCNKFVQAILKCLGLESSSIPPSSSSSSPslvEEEDSGTETVEETGFMARITAVlrrrPRPPPYSSGR 99
Cdd:pfam17232   9 DEVSYYLWIPFQFIHQILRSFLKCLGLESSSSNSPSSSSEE---DEEETETVEVTSRGVVVKVLKR----RPKPPPSSGK 81


                  .
gi 15227127   100 P 100
Cdd:pfam17232  82 P 82
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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