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Conserved domains on  [gi|15226414|ref|NP_179684|]
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epidermal patterning factor 1 [Arabidopsis thaliana]

Protein Classification

epidermal patterning factor protein( domain architecture ID 12182556)

epidermal patterning factor protein controls stomatal patterning

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
EPF pfam17181
Epidermal patterning factor proteins; EPF is a family of plant epidermal cell growth factors. ...
 53-103 1.18e-10

Epidermal patterning factor proteins; EPF is a family of plant epidermal cell growth factors. It is a signalling peptide that determines the spacing and separation of the development of stomatal cells in the upper epidermis of plant leaf cells.


:

Pssm-ID: 407307  Cd Length: 45  Bit Score: 52.05  E-value: 1.18e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 15226414    53 AGSRLPDCSHACGSCSPCRLVMVSFVCASVeeaetcPMAYKCMCNNKSYPV 103
Cdd:pfam17181   1 PGSSPPDCSNKCGSCSPCKAVQVPVPCEYY------PEAWRCKCGNKLFMP 45
 
Name Accession Description Interval E-value
EPF pfam17181
Epidermal patterning factor proteins; EPF is a family of plant epidermal cell growth factors. ...
 53-103 1.18e-10

Epidermal patterning factor proteins; EPF is a family of plant epidermal cell growth factors. It is a signalling peptide that determines the spacing and separation of the development of stomatal cells in the upper epidermis of plant leaf cells.


Pssm-ID: 407307  Cd Length: 45  Bit Score: 52.05  E-value: 1.18e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 15226414    53 AGSRLPDCSHACGSCSPCRLVMVSFVCASVeeaetcPMAYKCMCNNKSYPV 103
Cdd:pfam17181   1 PGSSPPDCSNKCGSCSPCKAVQVPVPCEYY------PEAWRCKCGNKLFMP 45
 
Name Accession Description Interval E-value
EPF pfam17181
Epidermal patterning factor proteins; EPF is a family of plant epidermal cell growth factors. ...
 53-103 1.18e-10

Epidermal patterning factor proteins; EPF is a family of plant epidermal cell growth factors. It is a signalling peptide that determines the spacing and separation of the development of stomatal cells in the upper epidermis of plant leaf cells.


Pssm-ID: 407307  Cd Length: 45  Bit Score: 52.05  E-value: 1.18e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 15226414    53 AGSRLPDCSHACGSCSPCRLVMVSFVCASVeeaetcPMAYKCMCNNKSYPV 103
Cdd:pfam17181   1 PGSSPPDCSNKCGSCSPCKAVQVPVPCEYY------PEAWRCKCGNKLFMP 45
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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