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Conserved domains on  [gi|15225570|ref|NP_179023|]
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wound-responsive protein-like protein [Arabidopsis thaliana]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FBD smart00579
domain in FBox and BRCT domain containing plant proteins;
1-56 2.26e-15

domain in FBox and BRCT domain containing plant proteins;


:

Pssm-ID: 214730  Cd Length: 72  Bit Score: 67.55  E-value: 2.26e-15
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 15225570      1 MKKQIEQVKQFLETMPNLEQMILYYDTPYDDDVLDVSMQLQMLHRvASAKCKIQVI 56
Cdd:smart00579  18 TEEEKELVKYFLENAPCLKKLTISVETSDDEEKLEILKELLSLPR-ASSSCQVQFL 72
DUF3774 pfam12609
Wound-induced protein; This family of proteins is found in eukaryotes. Proteins in this family ...
 117-191 1.22e-09

Wound-induced protein; This family of proteins is found in eukaryotes. Proteins in this family are typically between 81 and 97 amino acids in length. The proteins in the family are often annotated as wound-induced proteins however there is little accompanying literature to confirm this.


:

Pssm-ID: 463641  Cd Length: 77  Bit Score: 52.73  E-value: 1.22e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225570   117 VATAIAAVE-------TRWNYPLRFFNKDVRARLRAIAVTSRPPSSASSSSSSsadlvKENHPMPKSEASMERVMCLSCF 189
Cdd:pfam12609   1 VAASVGAVEalkdqglCRWNYALRSLHQHAKSSARSLSQAKKGSDSAGVARSS-----SSEEKRKQAEESLRTVMYLSCW 75


                  ..
gi 15225570   190 GP 191
Cdd:pfam12609  76 GP 77
 
Name Accession Description Interval E-value
FBD smart00579
domain in FBox and BRCT domain containing plant proteins;
1-56 2.26e-15

domain in FBox and BRCT domain containing plant proteins;


Pssm-ID: 214730  Cd Length: 72  Bit Score: 67.55  E-value: 2.26e-15
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 15225570      1 MKKQIEQVKQFLETMPNLEQMILYYDTPYDDDVLDVSMQLQMLHRvASAKCKIQVI 56
Cdd:smart00579  18 TEEEKELVKYFLENAPCLKKLTISVETSDDEEKLEILKELLSLPR-ASSSCQVQFL 72
DUF3774 pfam12609
Wound-induced protein; This family of proteins is found in eukaryotes. Proteins in this family ...
 117-191 1.22e-09

Wound-induced protein; This family of proteins is found in eukaryotes. Proteins in this family are typically between 81 and 97 amino acids in length. The proteins in the family are often annotated as wound-induced proteins however there is little accompanying literature to confirm this.


Pssm-ID: 463641  Cd Length: 77  Bit Score: 52.73  E-value: 1.22e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225570   117 VATAIAAVE-------TRWNYPLRFFNKDVRARLRAIAVTSRPPSSASSSSSSsadlvKENHPMPKSEASMERVMCLSCF 189
Cdd:pfam12609   1 VAASVGAVEalkdqglCRWNYALRSLHQHAKSSARSLSQAKKGSDSAGVARSS-----SSEEKRKQAEESLRTVMYLSCW 75


                  ..
gi 15225570   190 GP 191
Cdd:pfam12609  76 GP 77
 
Name Accession Description Interval E-value
FBD smart00579
domain in FBox and BRCT domain containing plant proteins;
1-56 2.26e-15

domain in FBox and BRCT domain containing plant proteins;


Pssm-ID: 214730  Cd Length: 72  Bit Score: 67.55  E-value: 2.26e-15
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 15225570      1 MKKQIEQVKQFLETMPNLEQMILYYDTPYDDDVLDVSMQLQMLHRvASAKCKIQVI 56
Cdd:smart00579  18 TEEEKELVKYFLENAPCLKKLTISVETSDDEEKLEILKELLSLPR-ASSSCQVQFL 72
DUF3774 pfam12609
Wound-induced protein; This family of proteins is found in eukaryotes. Proteins in this family ...
 117-191 1.22e-09

Wound-induced protein; This family of proteins is found in eukaryotes. Proteins in this family are typically between 81 and 97 amino acids in length. The proteins in the family are often annotated as wound-induced proteins however there is little accompanying literature to confirm this.


Pssm-ID: 463641  Cd Length: 77  Bit Score: 52.73  E-value: 1.22e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225570   117 VATAIAAVE-------TRWNYPLRFFNKDVRARLRAIAVTSRPPSSASSSSSSsadlvKENHPMPKSEASMERVMCLSCF 189
Cdd:pfam12609   1 VAASVGAVEalkdqglCRWNYALRSLHQHAKSSARSLSQAKKGSDSAGVARSS-----SSEEKRKQAEESLRTVMYLSCW 75


                  ..
gi 15225570   190 GP 191
Cdd:pfam12609  76 GP 77
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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