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Conserved domains on  [gi|15226880|ref|NP_178322|]
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low-molecular-weight cysteine-rich 72 [Arabidopsis thaliana]

Protein Classification

gamma-thionin family protein( domain architecture ID 10447803)

gamma-thionin family protein adopting the "knottin" fold, a stable cysteine-rich scaffold, in which one disulfide bridge crosses the macrocycle made by two other disulfide bridges and the connecting backbone segments, found in plant lectins/antimicrobial peptides, plant proteinase/amylase inhibitors, plant gamma-thionins, and arthropod defensins

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Gamma-thionin pfam00304
Gamma-thionin family;
32-73 1.82e-09

Gamma-thionin family;


:

Pssm-ID: 395240  Cd Length: 44  Bit Score: 47.66  E-value: 1.82e-09
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 15226880   32 ESPSNKFQGVCLNSQSCAKACPSEGFSGGRCS--SLRCYCSKAC 73
Cdd:pfam00304  1 ESKSGRFKGPCLSDSNCANVCINEGFGGGHCSgpRRRCFCTRPC 44
 
Name Accession Description Interval E-value
Gamma-thionin pfam00304
Gamma-thionin family;
32-73 1.82e-09

Gamma-thionin family;


Pssm-ID: 395240  Cd Length: 44  Bit Score: 47.66  E-value: 1.82e-09
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 15226880   32 ESPSNKFQGVCLNSQSCAKACPSEGFSGGRCS--SLRCYCSKAC 73
Cdd:pfam00304  1 ESKSGRFKGPCLSDSNCANVCINEGFGGGHCSgpRRRCFCTRPC 44
Knot1 smart00505
Knottins; Knottins, representing plant lectins/antimicrobial peptides, plant proteinase ...
 30-71 7.07e-06

Knottins; Knottins, representing plant lectins/antimicrobial peptides, plant proteinase/amylase inhibitors, plant gamma-thionins and arthropod defensins.


Pssm-ID: 214700  Cd Length: 45  Bit Score: 38.60  E-value: 7.07e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 15226880    30 TCESPSNKFQGVCLNS-QSCAKACPSEGFSGGRCS--SLRCYCSK 71
Cdd:smart00505  1 TCDGYSVTFSGNCKSScALCAKLCKKKGAKGGYCRgtTRRCFCYK 45
Knot1 cd00107
The "knottin" fold is stable cysteine-rich scaffold, in which one disulfide bridge crosses the ...
 40-69 5.38e-04

The "knottin" fold is stable cysteine-rich scaffold, in which one disulfide bridge crosses the macrocycle made by two other disulfide bridges and the connecting backbone segments. Members include plant lectins/antimicrobial peptides, plant proteinase/amylase inhibitors, plant gamma-thionins, and arthropod defensins.


Pssm-ID: 238055  Cd Length: 33  Bit Score: 33.86  E-value: 5.38e-04
                       10        20        30
               ....*....|....*....|....*....|..
gi 15226880 40 GVCLNSQSCAKACPSEGFSGGRCS--SLRCYC 69
Cdd:cd00107  1 GTCFSDSYCDKECKKKGASGGYCYgqGLACWC 32
 
Name Accession Description Interval E-value
Gamma-thionin pfam00304
Gamma-thionin family;
32-73 1.82e-09

Gamma-thionin family;


Pssm-ID: 395240  Cd Length: 44  Bit Score: 47.66  E-value: 1.82e-09
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 15226880   32 ESPSNKFQGVCLNSQSCAKACPSEGFSGGRCS--SLRCYCSKAC 73
Cdd:pfam00304  1 ESKSGRFKGPCLSDSNCANVCINEGFGGGHCSgpRRRCFCTRPC 44
Knot1 smart00505
Knottins; Knottins, representing plant lectins/antimicrobial peptides, plant proteinase ...
 30-71 7.07e-06

Knottins; Knottins, representing plant lectins/antimicrobial peptides, plant proteinase/amylase inhibitors, plant gamma-thionins and arthropod defensins.


Pssm-ID: 214700  Cd Length: 45  Bit Score: 38.60  E-value: 7.07e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 15226880    30 TCESPSNKFQGVCLNS-QSCAKACPSEGFSGGRCS--SLRCYCSK 71
Cdd:smart00505  1 TCDGYSVTFSGNCKSScALCAKLCKKKGAKGGYCRgtTRRCFCYK 45
Knot1 cd00107
The "knottin" fold is stable cysteine-rich scaffold, in which one disulfide bridge crosses the ...
 40-69 5.38e-04

The "knottin" fold is stable cysteine-rich scaffold, in which one disulfide bridge crosses the macrocycle made by two other disulfide bridges and the connecting backbone segments. Members include plant lectins/antimicrobial peptides, plant proteinase/amylase inhibitors, plant gamma-thionins, and arthropod defensins.


Pssm-ID: 238055  Cd Length: 33  Bit Score: 33.86  E-value: 5.38e-04
                       10        20        30
               ....*....|....*....|....*....|..
gi 15226880 40 GVCLNSQSCAKACPSEGFSGGRCS--SLRCYC 69
Cdd:cd00107  1 GTCFSDSYCDKECKKKGASGGYCYgqGLACWC 32
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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