|
Name |
Accession |
Description |
Interval |
E-value |
| PLN03081 |
PLN03081 |
pentatricopeptide (PPR) repeat-containing protein; Provisional |
46-462 |
4.97e-82 |
|
pentatricopeptide (PPR) repeat-containing protein; Provisional
Pssm-ID: 215563 [Multi-domain] Cd Length: 697 Bit Score: 267.51 E-value: 4.97e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15223858 46 RNKLLATLLSnCTSLARVRRIhgdifrsriLDQYPI--AFLWNNIMRSYIRHESPLDAIQVYLGMVRSTVLPDRYSLPIV 123
Cdd:PLN03081 161 MNRVLLMHVK-CGMLIDARRL---------FDEMPErnLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVM 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15223858 124 IKAAVQIHDFTLGKELHSVAVRLGFVGDEFCESGFITLYCKAGEFENARKVFDENPERKLGSWNAIIGGLNHAGRANEAV 203
Cdd:PLN03081 231 LRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEAL 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15223858 204 EMFVDMKRSGLEPDDFTMVSVTASCGGLGDLSLAFQLHKCVLQAKTEekSDIMMLNSLIDMYGKCGRMDLASHIFEEMRQ 283
Cdd:PLN03081 311 CLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFP--LDIVANTALVDLYSKWGRMEDARNVFDRMPR 388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15223858 284 RNVVSWSSMIVGYAANGNTLEALECFRQMREFGVRPNKITFVGVLSACVHGGLVEEGKTYFAMMKSEFELEPGLSHYGCI 363
Cdd:PLN03081 389 KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACM 468
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15223858 364 VDLLSRDGQLKEAKKVVEEMPMKPNVMVWGCLMGGCEKFGDVEMAEWVAPYMVELEPWNDGVYVVLANVYALRGMWKDVE 443
Cdd:PLN03081 469 IELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAA 548
|
410
....*....|....*....
gi 15223858 444 RVRKLMKTKKVAKIPAYSY 462
Cdd:PLN03081 549 KVVETLKRKGLSMHPACTW 567
|
|
| E_motif |
pfam20431 |
E motif; This entry represents the E motif found in plant pentatricopeptide repeat (PPR) ... |
402-462 |
8.79e-16 |
|
E motif; This entry represents the E motif found in plant pentatricopeptide repeat (PPR) proteins which contain a DYW deaminase domain. The DYW domain is required for RNA editing, a process that deaminates specific cytidines to uridines. This motif, together with the E+ motif, precedes the DYW domain and, although their role is not clear, they are essential in the RNA editing reaction. The E/E+ motifs may contain two degenerate PPR motifs that could be involved in RNA or protein binding.
Pssm-ID: 466580 [Multi-domain] Cd Length: 63 Bit Score: 71.42 E-value: 8.79e-16
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 15223858 402 FGDVEMAEWVAPYMVELEPWNDGVYVVLANVYALRGMWKDVERVRKLMKTKKVAKIPAYSY 462
Cdd:pfam20431 1 YSNVELAEKAANILLELEKTNDGNYTLLSNIYAYAGRWKDVERIRKLMKSSGIKKRPGCSW 61
|
|
| PPR |
TIGR00756 |
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ... |
287-320 |
1.93e-05 |
|
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Pssm-ID: 273253 [Multi-domain] Cd Length: 35 Bit Score: 41.29 E-value: 1.93e-05
10 20 30
....*....|....*....|....*....|....
gi 15223858 287 VSWSSMIVGYAANGNTLEALECFRQMREFGVRPN 320
Cdd:TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
161-318 |
2.03e-03 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 39.99 E-value: 2.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15223858 161 LYCKAGEFENARKVFDE----NPErKLGSWNAIIGGLNHAGRANEAVEMFvdmKRS-GLEPDDF-TMVSVTASCGGLGDL 234
Cdd:COG0457 17 AYRRLGRYEEAIEDYEKalelDPD-DAEALYNLGLAYLRLGRYEEALADY---EQAlELDPDDAeALNNLGLALQALGRY 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15223858 235 SLAFQLHKCVLQAKTEeksDIMMLNSLIDMYGKCGRMDLASHIFE---EMRQRNVVSWSSMIVGYAANGNTLEALECFRQ 311
Cdd:COG0457 93 EEALEDYDKALELDPD---DAEALYNLGLALLELGRYDEAIEAYEralELDPDDADALYNLGIALEKLGRYEEALELLEK 169
|
....*..
gi 15223858 312 MREFGVR 318
Cdd:COG0457 170 LEAAALA 176
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PLN03081 |
PLN03081 |
pentatricopeptide (PPR) repeat-containing protein; Provisional |
46-462 |
4.97e-82 |
|
pentatricopeptide (PPR) repeat-containing protein; Provisional
Pssm-ID: 215563 [Multi-domain] Cd Length: 697 Bit Score: 267.51 E-value: 4.97e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15223858 46 RNKLLATLLSnCTSLARVRRIhgdifrsriLDQYPI--AFLWNNIMRSYIRHESPLDAIQVYLGMVRSTVLPDRYSLPIV 123
Cdd:PLN03081 161 MNRVLLMHVK-CGMLIDARRL---------FDEMPErnLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVM 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15223858 124 IKAAVQIHDFTLGKELHSVAVRLGFVGDEFCESGFITLYCKAGEFENARKVFDENPERKLGSWNAIIGGLNHAGRANEAV 203
Cdd:PLN03081 231 LRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEAL 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15223858 204 EMFVDMKRSGLEPDDFTMVSVTASCGGLGDLSLAFQLHKCVLQAKTEekSDIMMLNSLIDMYGKCGRMDLASHIFEEMRQ 283
Cdd:PLN03081 311 CLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFP--LDIVANTALVDLYSKWGRMEDARNVFDRMPR 388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15223858 284 RNVVSWSSMIVGYAANGNTLEALECFRQMREFGVRPNKITFVGVLSACVHGGLVEEGKTYFAMMKSEFELEPGLSHYGCI 363
Cdd:PLN03081 389 KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACM 468
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15223858 364 VDLLSRDGQLKEAKKVVEEMPMKPNVMVWGCLMGGCEKFGDVEMAEWVAPYMVELEPWNDGVYVVLANVYALRGMWKDVE 443
Cdd:PLN03081 469 IELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAA 548
|
410
....*....|....*....
gi 15223858 444 RVRKLMKTKKVAKIPAYSY 462
Cdd:PLN03081 549 KVVETLKRKGLSMHPACTW 567
|
|
| PLN03077 |
PLN03077 |
Protein ECB2; Provisional |
85-462 |
1.22e-81 |
|
Protein ECB2; Provisional
Pssm-ID: 215561 [Multi-domain] Cd Length: 857 Bit Score: 269.80 E-value: 1.22e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15223858 85 WNNIMRSYIRHESPLDAIQVYLGMVRSTVLPDRYSLPIVIKAAVQIHDFTLGKELHSVAVRLGFVGDEFCESGFITLYCK 164
Cdd:PLN03077 357 WTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSK 436
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15223858 165 AGEFENARKVFDENPERKLGSWNAIIGGLNHAGRANEAVEMFVDMKRSgLEPDDFTMVSVTASCGGLGDLSLAFQLHKCV 244
Cdd:PLN03077 437 CKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHV 515
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15223858 245 LqaKTEEKSDIMMLNSLIDMYGKCGRMDLASHIFEeMRQRNVVSWSSMIVGYAANGNTLEALECFRQMREFGVRPNKITF 324
Cdd:PLN03077 516 L--RTGIGFDGFLPNALLDLYVRCGRMNYAWNQFN-SHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTF 592
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15223858 325 VGVLSACVHGGLVEEGKTYFAMMKSEFELEPGLSHYGCIVDLLSRDGQLKEAKKVVEEMPMKPNVMVWGCLMGGCEKFGD 404
Cdd:PLN03077 593 ISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRH 672
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 15223858 405 VEMAEWVAPYMVELEPWNDGVYVVLANVYALRGMWKDVERVRKLMKTKKVAKIPAYSY 462
Cdd:PLN03077 673 VELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSW 730
|
|
| PLN03077 |
PLN03077 |
Protein ECB2; Provisional |
83-398 |
3.23e-53 |
|
Protein ECB2; Provisional
Pssm-ID: 215561 [Multi-domain] Cd Length: 857 Bit Score: 191.60 E-value: 3.23e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15223858 83 FLWNNIMRSYIRHESPLDAIQVYLGMVRSTVLPDRYSLPIVIKAAVQIHDFTLGKELHSVAVRLGFVGDEFCESGFITLY 162
Cdd:PLN03077 153 FSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMY 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15223858 163 CKAGEFENARKVFDENPERKLGSWNAIIGGLNHAGRANEAVEMFVDMKRSGLEPDDFTMVSVTASCGGLGDLSLAFQLHK 242
Cdd:PLN03077 233 VKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHG 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15223858 243 CVLqaKTEEKSDIMMLNSLIDMYGKCGRMDLASHIFEEMRQRNVVSWSSMIVGYAANGNTLEALECFRQMREFGVRPNKI 322
Cdd:PLN03077 313 YVV--KTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEI 390
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15223858 323 TFVGVLSACVHGGLVEEGktyfaMMKSEFELEPGLSHY----GCIVDLLSRDGQLKEAKKVVEEMPMKpNVMVWGCLMGG 398
Cdd:PLN03077 391 TIASVLSACACLGDLDVG-----VKLHELAERKGLISYvvvaNALIEMYSKCKCIDKALEVFHNIPEK-DVISWTSIIAG 464
|
|
| PLN03077 |
PLN03077 |
Protein ECB2; Provisional |
137-403 |
2.82e-40 |
|
Protein ECB2; Provisional
Pssm-ID: 215561 [Multi-domain] Cd Length: 857 Bit Score: 154.24 E-value: 2.82e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15223858 137 KELHSVAVRLGfvgdefceSGFITLYCKAGEFENARKVFDENPERKLGSWNAIIGGLNHAGRANEAVEMFVDMKRSGLEP 216
Cdd:PLN03077 114 SSHPSLGVRLG--------NAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRP 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15223858 217 DDFTMVSVTASCGGLGDLSLAFQLHKCVLQAKTEEKSDImmLNSLIDMYGKCGRMDLASHIFEEMRQRNVVSWSSMIVGY 296
Cdd:PLN03077 186 DVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDV--VNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGY 263
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15223858 297 AANGNTLEALECFRQMREFGVRPNKITFVGVLSACVHGGLVEEGKTYFA-MMKSEFELEpgLSHYGCIVDLLSRDGQLKE 375
Cdd:PLN03077 264 FENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGyVVKTGFAVD--VSVCNSLIQMYLSLGSWGE 341
|
250 260
....*....|....*....|....*...
gi 15223858 376 AKKVVEEMPMKpNVMVWGCLMGGCEKFG 403
Cdd:PLN03077 342 AEKVFSRMETK-DAVSWTAMISGYEKNG 368
|
|
| E_motif |
pfam20431 |
E motif; This entry represents the E motif found in plant pentatricopeptide repeat (PPR) ... |
402-462 |
8.79e-16 |
|
E motif; This entry represents the E motif found in plant pentatricopeptide repeat (PPR) proteins which contain a DYW deaminase domain. The DYW domain is required for RNA editing, a process that deaminates specific cytidines to uridines. This motif, together with the E+ motif, precedes the DYW domain and, although their role is not clear, they are essential in the RNA editing reaction. The E/E+ motifs may contain two degenerate PPR motifs that could be involved in RNA or protein binding.
Pssm-ID: 466580 [Multi-domain] Cd Length: 63 Bit Score: 71.42 E-value: 8.79e-16
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 15223858 402 FGDVEMAEWVAPYMVELEPWNDGVYVVLANVYALRGMWKDVERVRKLMKTKKVAKIPAYSY 462
Cdd:pfam20431 1 YSNVELAEKAANILLELEKTNDGNYTLLSNIYAYAGRWKDVERIRKLMKSSGIKKRPGCSW 61
|
|
| PLN03218 |
PLN03218 |
maturation of RBCL 1; Provisional |
219-408 |
7.76e-12 |
|
maturation of RBCL 1; Provisional
Pssm-ID: 215636 [Multi-domain] Cd Length: 1060 Bit Score: 67.59 E-value: 7.76e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15223858 219 FTMV-SVTASCGglgDLSLAFQlhkcVLQAKTEE--KSDIMMLNSLIDMYGKCGRMDLASHIFEEMR----QRNVVSWSS 291
Cdd:PLN03218 440 FNMLmSVCASSQ---DIDGALR----VLRLVQEAglKADCKLYTTLISTCAKSGKVDAMFEVFHEMVnagvEANVHTFGA 512
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15223858 292 MIVGYAANGNTLEALECFRQMREFGVRPNKITFVGVLSACVHGGLVEEGKTYFAMMKSEFE-LEPGLSHYGCIVDLLSRD 370
Cdd:PLN03218 513 LIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHpIDPDHITVGALMKACANA 592
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 15223858 371 GQLKEAKKV---VEEMPMKPNVMVWGCLMGGCEKFGDVEMA 408
Cdd:PLN03218 593 GQVDRAKEVyqmIHEYNIKGTPEVYTIAVNSCSQKGDWDFA 633
|
|
| PLN03218 |
PLN03218 |
maturation of RBCL 1; Provisional |
188-399 |
2.03e-10 |
|
maturation of RBCL 1; Provisional
Pssm-ID: 215636 [Multi-domain] Cd Length: 1060 Bit Score: 63.36 E-value: 2.03e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15223858 188 AIIGGLNHAGRANEAVEMFVDMKRSGLE--PDDFTMVsvTASCGGLGDLSLAFQLHKCVLqaKTEEKSDIMMLNSLIDMY 265
Cdd:PLN03218 584 ALMKACANAGQVDRAKEVYQMIHEYNIKgtPEVYTIA--VNSCSQKGDWDFALSIYDDMK--KKGVKPDEVFFSALVDVA 659
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15223858 266 GKCGRMDLASHIFEEMR----QRNVVSWSSMIvGYAAN-GNTLEALECFRQMREFGVRPNKITFVGVLSACVHGGLVEEG 340
Cdd:PLN03218 660 GHAGDLDKAFEILQDARkqgiKLGTVSYSSLM-GACSNaKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKA 738
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15223858 341 KTYFAMMKSeFELEPGLSHYGCIVDLLSRDGQLKEAKKVVEEMP---MKPNVMVWGCLMGGC 399
Cdd:PLN03218 739 LEVLSEMKR-LGLCPNTITYSILLVASERKDDADVGLDLLSQAKedgIKPNLVMCRCITGLC 799
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
284-333 |
1.16e-08 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 50.82 E-value: 1.16e-08
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 15223858 284 RNVVSWSSMIVGYAANGNTLEALECFRQMREFGVRPNKITFVGVLSACVH 333
Cdd:pfam13041 1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
185-220 |
1.53e-07 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 47.74 E-value: 1.53e-07
10 20 30
....*....|....*....|....*....|....*.
gi 15223858 185 SWNAIIGGLNHAGRANEAVEMFVDMKRSGLEPDDFT 220
Cdd:pfam13041 5 TYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYT 40
|
|
| PLN03218 |
PLN03218 |
maturation of RBCL 1; Provisional |
164-408 |
4.52e-07 |
|
maturation of RBCL 1; Provisional
Pssm-ID: 215636 [Multi-domain] Cd Length: 1060 Bit Score: 52.57 E-value: 4.52e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15223858 164 KAGEFENARKVFDE----NPERKLGSWNAIIGGLNHAGRANEAVEMFVDMKRSGLEPDDFTMVSVTASCGGLGDLSLAFQ 239
Cdd:PLN03218 484 KSGKVDAMFEVFHEmvnaGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFD 563
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15223858 240 lhkcVLQAKTEE----KSDIMMLNSLIDMYGKCGRMDLASHIFEEMRQRNV----------VSWSSMIvgyaanGNTLEA 305
Cdd:PLN03218 564 ----VLAEMKAEthpiDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIkgtpevytiaVNSCSQK------GDWDFA 633
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15223858 306 LECFRQMREFGVRPNKITFVGVLSACVHGGLVEEGKTYFAMMKSE----------------------------FE----- 352
Cdd:PLN03218 634 LSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQgiklgtvsysslmgacsnaknwkkalelYEdiksi 713
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 15223858 353 -LEPGLSHYGCIVDLLSRDGQLKEAKKVVEEMP---MKPNVMVWGCLMGGCEKFGDVEMA 408
Cdd:PLN03218 714 kLRPTVSTMNALITALCEGNQLPKALEVLSEMKrlgLCPNTITYSILLVASERKDDADVG 773
|
|
| PLN03218 |
PLN03218 |
maturation of RBCL 1; Provisional |
113-369 |
7.03e-07 |
|
maturation of RBCL 1; Provisional
Pssm-ID: 215636 [Multi-domain] Cd Length: 1060 Bit Score: 51.80 E-value: 7.03e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15223858 113 VLPDRYSLPIVIKAAVQIHDFTLGKELHSVAVRLGFVGDEFCESGFITLYCKAGEFENARKVFDE------NPERKLGSw 186
Cdd:PLN03218 575 IDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDmkkkgvKPDEVFFS- 653
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15223858 187 nAIIGGLNHAGRANEAVEMFVDMKRSGLEPDDFTMVSVTASCGGLGDLSLAFQLHKCVLQAKTeeKSDIMMLNSLidMYG 266
Cdd:PLN03218 654 -ALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKL--RPTVSTMNAL--ITA 728
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15223858 267 KCgrmdlashifeemrqrnvvswssmivgyaaNGNTLE-ALECFRQMREFGVRPNKITFVGVLSACVHGGLVEEGKTYFA 345
Cdd:PLN03218 729 LC------------------------------EGNQLPkALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLS 778
|
250 260
....*....|....*....|....
gi 15223858 346 MMKSEfELEPGLSHYGCIVDLLSR 369
Cdd:PLN03218 779 QAKED-GIKPNLVMCRCITGLCLR 801
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
259-297 |
9.62e-06 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 42.74 E-value: 9.62e-06
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 15223858 259 NSLIDMYGKCGRMDLASHIFEEMRQR----NVVSWSSMIVGYA 297
Cdd:pfam13041 7 NTLINGYCKKGKVEEAFKLFNEMKKRgvkpNVYTYTILINGLC 49
|
|
| PPR |
pfam01535 |
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ... |
287-317 |
1.15e-05 |
|
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.
Pssm-ID: 366695 [Multi-domain] Cd Length: 31 Bit Score: 42.07 E-value: 1.15e-05
10 20 30
....*....|....*....|....*....|.
gi 15223858 287 VSWSSMIVGYAANGNTLEALECFRQMREFGV 317
Cdd:pfam01535 1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
|
|
| PPR_3 |
pfam13812 |
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ... |
277-332 |
1.57e-05 |
|
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.
Pssm-ID: 316342 [Multi-domain] Cd Length: 63 Bit Score: 42.35 E-value: 1.57e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 15223858 277 IFEEMRQR----NVVSWSSMIVGYAANGNTLEALECFRQMREFGVRPNKITFVGVLSACV 332
Cdd:pfam13812 2 ILREMVRDgiqlNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVIG 61
|
|
| PPR |
TIGR00756 |
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ... |
287-320 |
1.93e-05 |
|
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Pssm-ID: 273253 [Multi-domain] Cd Length: 35 Bit Score: 41.29 E-value: 1.93e-05
10 20 30
....*....|....*....|....*....|....
gi 15223858 287 VSWSSMIVGYAANGNTLEALECFRQMREFGVRPN 320
Cdd:TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
|
| PPR |
TIGR00756 |
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ... |
185-218 |
2.86e-05 |
|
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Pssm-ID: 273253 [Multi-domain] Cd Length: 35 Bit Score: 40.90 E-value: 2.86e-05
10 20 30
....*....|....*....|....*....|....
gi 15223858 185 SWNAIIGGLNHAGRANEAVEMFVDMKRSGLEPDD 218
Cdd:TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
|
| PPR |
pfam01535 |
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ... |
257-286 |
4.34e-04 |
|
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.
Pssm-ID: 366695 [Multi-domain] Cd Length: 31 Bit Score: 37.44 E-value: 4.34e-04
10 20 30
....*....|....*....|....*....|
gi 15223858 257 MLNSLIDMYGKCGRMDLASHIFEEMRQRNV 286
Cdd:pfam01535 2 TYNSLISGYCKNGKLEEALELFKEMKEKGI 31
|
|
| PLN03077 |
PLN03077 |
Protein ECB2; Provisional |
290-408 |
8.17e-04 |
|
Protein ECB2; Provisional
Pssm-ID: 215561 [Multi-domain] Cd Length: 857 Bit Score: 42.14 E-value: 8.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15223858 290 SSMIVGYAANGNTLEALECFRQMREFGVRPNKITFVGVLSACVHGGLVEEGKTYFAMMKSE---FELEPGlshyGCIVDL 366
Cdd:PLN03077 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSShpsLGVRLG----NAMLSM 130
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 15223858 367 LSRDGQLKEAKKVVEEMPMKpNVMVWGCLMGGCEKFGDVEMA 408
Cdd:PLN03077 131 FVRFGELVHAWYVFGKMPER-DLFSWNVLVGGYAKAGYFDEA 171
|
|
| PPR |
pfam01535 |
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ... |
185-214 |
9.07e-04 |
|
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.
Pssm-ID: 366695 [Multi-domain] Cd Length: 31 Bit Score: 36.67 E-value: 9.07e-04
10 20 30
....*....|....*....|....*....|
gi 15223858 185 SWNAIIGGLNHAGRANEAVEMFVDMKRSGL 214
Cdd:pfam01535 2 TYNSLISGYCKNGKLEEALELFKEMKEKGI 31
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
161-318 |
2.03e-03 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 39.99 E-value: 2.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15223858 161 LYCKAGEFENARKVFDE----NPErKLGSWNAIIGGLNHAGRANEAVEMFvdmKRS-GLEPDDF-TMVSVTASCGGLGDL 234
Cdd:COG0457 17 AYRRLGRYEEAIEDYEKalelDPD-DAEALYNLGLAYLRLGRYEEALADY---EQAlELDPDDAeALNNLGLALQALGRY 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15223858 235 SLAFQLHKCVLQAKTEeksDIMMLNSLIDMYGKCGRMDLASHIFE---EMRQRNVVSWSSMIVGYAANGNTLEALECFRQ 311
Cdd:COG0457 93 EEALEDYDKALELDPD---DAEALYNLGLALLELGRYDEAIEAYEralELDPDDADALYNLGIALEKLGRYEEALELLEK 169
|
....*..
gi 15223858 312 MREFGVR 318
Cdd:COG0457 170 LEAAALA 176
|
|
| PPR |
TIGR00756 |
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ... |
256-287 |
2.06e-03 |
|
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Pssm-ID: 273253 [Multi-domain] Cd Length: 35 Bit Score: 35.51 E-value: 2.06e-03
10 20 30
....*....|....*....|....*....|..
gi 15223858 256 MMLNSLIDMYGKCGRMDLASHIFEEMRQRNVV 287
Cdd:TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIE 32
|
|
| PPR_1 |
pfam12854 |
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ... |
254-282 |
7.38e-03 |
|
PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.
Pssm-ID: 403914 [Multi-domain] Cd Length: 34 Bit Score: 34.24 E-value: 7.38e-03
10 20
....*....|....*....|....*....
gi 15223858 254 DIMMLNSLIDMYGKCGRMDLASHIFEEMR 282
Cdd:pfam12854 6 DVVTYNTLINGLCRAGRVDEAFELLDEME 34
|
|
| |
