NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|145337451|ref|NP_177386|]
View 

NADH:ubiquinone oxidoreductase intermediate-associated protein 30 [Arabidopsis thaliana]

Protein Classification

CIA30 family protein( domain architecture ID 10554017)

CIA30 family protein similar to eukaryotic complex I intermediate-associated protein 30, a chaperone protein involved in the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I)

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
CIA30 pfam08547
Complex I intermediate-associated protein 30 (CIA30); This protein is associated with ...
 35-219 1.58e-53

Complex I intermediate-associated protein 30 (CIA30); This protein is associated with mitochondrial Complex I intermediate-associated protein 30 (CIA30) in human and mouse. The family is also present in Schizosaccharomyces pombe which does not contain the NADH dehydrogenase component of complex I, or many of the other essential subunits. This means it is possible that this family of protein may not be directly involved in oxidative phosphorylation.


:

Pssm-ID: 462515  Cd Length: 156  Bit Score: 169.31  E-value: 1.58e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145337451   35 FKFNSKEDLKTWHLYSDSEYGGLSSASLEIKDGGNrsdcnGVFSGNLSTDmregskwniNRSGFCGMRSKKFDGFIDLEG 114
Cdd:pfam08547   1 FDFTSPESLDKWRSVNDRVMGGVSTSSLKLSVDGT-----ARFSGNLSLE---------NNGGFASVRSRNFDPPLDLSG 66

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145337451  115 YDSIALRLKGDGRCYISTIYTENwvnspgQAEDNSWQAFVFAPKGNWYTAKVPLTRYLPTWKGNVIDAEMEMNPGHVVGM 194
Cdd:pfam08547  67 YDGLELRVKGDGRTYKLNLRTES------LRDGDSYQADFYTTPGEWQTVKIPFSDFVPTFRGRVVDDAPPLDLSKIKQI 140

                         170       180
                  ....*....|....*....|....*
gi 145337451  195 SLSVnaqgggfigAKSGAGDFQVEI 219
Cdd:pfam08547 141 GLLL---------SDKQEGPFELEI 156
 
Name Accession Description Interval E-value
CIA30 pfam08547
Complex I intermediate-associated protein 30 (CIA30); This protein is associated with ...
 35-219 1.58e-53

Complex I intermediate-associated protein 30 (CIA30); This protein is associated with mitochondrial Complex I intermediate-associated protein 30 (CIA30) in human and mouse. The family is also present in Schizosaccharomyces pombe which does not contain the NADH dehydrogenase component of complex I, or many of the other essential subunits. This means it is possible that this family of protein may not be directly involved in oxidative phosphorylation.


Pssm-ID: 462515  Cd Length: 156  Bit Score: 169.31  E-value: 1.58e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145337451   35 FKFNSKEDLKTWHLYSDSEYGGLSSASLEIKDGGNrsdcnGVFSGNLSTDmregskwniNRSGFCGMRSKKFDGFIDLEG 114
Cdd:pfam08547   1 FDFTSPESLDKWRSVNDRVMGGVSTSSLKLSVDGT-----ARFSGNLSLE---------NNGGFASVRSRNFDPPLDLSG 66

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145337451  115 YDSIALRLKGDGRCYISTIYTENwvnspgQAEDNSWQAFVFAPKGNWYTAKVPLTRYLPTWKGNVIDAEMEMNPGHVVGM 194
Cdd:pfam08547  67 YDGLELRVKGDGRTYKLNLRTES------LRDGDSYQADFYTTPGEWQTVKIPFSDFVPTFRGRVVDDAPPLDLSKIKQI 140

                         170       180
                  ....*....|....*....|....*
gi 145337451  195 SLSVnaqgggfigAKSGAGDFQVEI 219
Cdd:pfam08547 141 GLLL---------SDKQEGPFELEI 156
 
Name Accession Description Interval E-value
CIA30 pfam08547
Complex I intermediate-associated protein 30 (CIA30); This protein is associated with ...
 35-219 1.58e-53

Complex I intermediate-associated protein 30 (CIA30); This protein is associated with mitochondrial Complex I intermediate-associated protein 30 (CIA30) in human and mouse. The family is also present in Schizosaccharomyces pombe which does not contain the NADH dehydrogenase component of complex I, or many of the other essential subunits. This means it is possible that this family of protein may not be directly involved in oxidative phosphorylation.


Pssm-ID: 462515  Cd Length: 156  Bit Score: 169.31  E-value: 1.58e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145337451   35 FKFNSKEDLKTWHLYSDSEYGGLSSASLEIKDGGNrsdcnGVFSGNLSTDmregskwniNRSGFCGMRSKKFDGFIDLEG 114
Cdd:pfam08547   1 FDFTSPESLDKWRSVNDRVMGGVSTSSLKLSVDGT-----ARFSGNLSLE---------NNGGFASVRSRNFDPPLDLSG 66

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145337451  115 YDSIALRLKGDGRCYISTIYTENwvnspgQAEDNSWQAFVFAPKGNWYTAKVPLTRYLPTWKGNVIDAEMEMNPGHVVGM 194
Cdd:pfam08547  67 YDGLELRVKGDGRTYKLNLRTES------LRDGDSYQADFYTTPGEWQTVKIPFSDFVPTFRGRVVDDAPPLDLSKIKQI 140

                         170       180
                  ....*....|....*....|....*
gi 145337451  195 SLSVnaqgggfigAKSGAGDFQVEI 219
Cdd:pfam08547 141 GLLL---------SDKQEGPFELEI 156
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH