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Conserved domains on  [gi|15218298|ref|NP_177342|]
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uncharacterized protein AT1G71970 [Arabidopsis thaliana]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF688 super family cl04934
Protein of unknown function (DUF688); This family contains several uncharacterized proteins ...
 67-145 9.69e-03

Protein of unknown function (DUF688); This family contains several uncharacterized proteins found in Arabidopsis thaliana.


The actual alignment was detected with superfamily member pfam05097:

Pssm-ID: 368284  Cd Length: 443  Bit Score: 36.66  E-value: 9.69e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15218298    67 VPFSWEQLPGKPKDYSHrlnnrrnnessnlllPLPPHRNISFPATGKKPKPNNSSKKNSFPVTGKDPFAAALLECSKDE 145
Cdd:pfam05097  62 VPFKWEQTPGKPKDESK---------------PQIPDFSPKLPPGRSRVPVSAVLRKDDDDDDEEDDYLDALDTLSRTE 125
 
Name Accession Description Interval E-value
DUF688 pfam05097
Protein of unknown function (DUF688); This family contains several uncharacterized proteins ...
 67-145 9.69e-03

Protein of unknown function (DUF688); This family contains several uncharacterized proteins found in Arabidopsis thaliana.


Pssm-ID: 368284  Cd Length: 443  Bit Score: 36.66  E-value: 9.69e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15218298    67 VPFSWEQLPGKPKDYSHrlnnrrnnessnlllPLPPHRNISFPATGKKPKPNNSSKKNSFPVTGKDPFAAALLECSKDE 145
Cdd:pfam05097  62 VPFKWEQTPGKPKDESK---------------PQIPDFSPKLPPGRSRVPVSAVLRKDDDDDDEEDDYLDALDTLSRTE 125
 
Name Accession Description Interval E-value
DUF688 pfam05097
Protein of unknown function (DUF688); This family contains several uncharacterized proteins ...
 67-145 9.69e-03

Protein of unknown function (DUF688); This family contains several uncharacterized proteins found in Arabidopsis thaliana.


Pssm-ID: 368284  Cd Length: 443  Bit Score: 36.66  E-value: 9.69e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15218298    67 VPFSWEQLPGKPKDYSHrlnnrrnnessnlllPLPPHRNISFPATGKKPKPNNSSKKNSFPVTGKDPFAAALLECSKDE 145
Cdd:pfam05097  62 VPFKWEQTPGKPKDESK---------------PQIPDFSPKLPPGRSRVPVSAVLRKDDDDDDEEDDYLDALDTLSRTE 125
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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