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Conserved domains on  [gi|15217514|ref|NP_177305|]
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Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

Protein Classification

pentatricopeptide repeat-containing protein( domain architecture ID 1000585)

pentatricopeptide repeat (PPR)-containing protein may form anti-parallel alpha helices and bind single-stranded RNA in a sequence-specific and modular manner

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN03077 super family cl33629
Protein ECB2; Provisional
 10-674 2.56e-136

Protein ECB2; Provisional


The actual alignment was detected with superfamily member PLN03077:

Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 421.18  E-value: 2.56e-136
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15217514   10 LGHLASHGHLHDAFKTfsllrLQSSSAVSDDLVLHSAASLLSACVDVRAFLAGVQVHAHCISS----GVEYHSVLVPKLV 85
Cdd:PLN03077  58 LRALCSHGQLEQALKL-----LESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSShpslGVRLGNAMLSMFV 132

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15217514   86 TFYSAFNLHNEAQSIIENsDILhplPWNVLIASYAKNELFEEVIAAYKRMVSKGIRPDAFTYPSVLKACGETLDVAFGRV 165
Cdd:PLN03077 133 RFGELVHAWYVFGKMPER-DLF---SWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGRE 208

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15217514  166 VHGSIEVSSYKSSLYVCNALISMYKRFRNMGIARRLFDRMFERDAVSWNAVIN-------C------------------- 219
Cdd:PLN03077 209 VHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISgyfengeCleglelfftmrelsvdpdl 288

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15217514  220 --------------------------------------------YASEGMWSEAFELFDKMWFSgvevSVITWNIISGGC 255
Cdd:PLN03077 289 mtitsvisacellgderlgremhgyvvktgfavdvsvcnsliqmYLSLGSWGEAEKVFSRMETK----DAVSWTAMISGY 364

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15217514  256 LQTGNYVGALGLISRMRNFPTSLDPVAMIIGLKACSLIGAIRLGKEIHGLAIHSSYDGIDNVRNTLITMYSKCKDLRHAL 335
Cdd:PLN03077 365 EKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKAL 444

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15217514  336 IVFRQTEENSLCTWNSIISGYAQLNKSEEASHLLREMLvAGFQPNSITLASILPLCARIANLQHGKEFHCYILRRKC-FK 414
Cdd:PLN03077 445 EVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQML-LTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIgFD 523

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15217514  415 DYtmLWNSLVDVYAKSGKI-VAAKQVSdlMSKRDEVTYTSLIDGYGNQGEGGVALALFKEMTRSGIKPDHVTVVAVLSAC 493
Cdd:PLN03077 524 GF--LPNALLDLYVRCGRMnYAWNQFN--SHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCAC 599

                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15217514  494 SHSKLVHEGERLFMKMQCEYGIRPCLQHFSCMVDLYGRAGFLAKAKDIIHNMPYKPSGATWATLLNACHIHGNTQIGKWA 573
Cdd:PLN03077 600 SRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELA 679

                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15217514  574 AEKLLEMKPENPGYYVLIANMYAAAGSWSKLAEVRTIMRDLGVKKDPGCAWIDTDSGFSLFSVGDTSSPEACNTYPLLDG 653
Cdd:PLN03077 680 AQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEG 759

                        730       740
                 ....*....|....*....|.
gi 15217514  654 LNQLMKDnAGYAINKVQSSDE 674
Cdd:PLN03077 760 FYEKMKA-SGLAGSESSSMDE 779
 
Name Accession Description Interval E-value
PLN03077 PLN03077
Protein ECB2; Provisional
 10-674 2.56e-136

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 421.18  E-value: 2.56e-136
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15217514   10 LGHLASHGHLHDAFKTfsllrLQSSSAVSDDLVLHSAASLLSACVDVRAFLAGVQVHAHCISS----GVEYHSVLVPKLV 85
Cdd:PLN03077  58 LRALCSHGQLEQALKL-----LESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSShpslGVRLGNAMLSMFV 132

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15217514   86 TFYSAFNLHNEAQSIIENsDILhplPWNVLIASYAKNELFEEVIAAYKRMVSKGIRPDAFTYPSVLKACGETLDVAFGRV 165
Cdd:PLN03077 133 RFGELVHAWYVFGKMPER-DLF---SWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGRE 208

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15217514  166 VHGSIEVSSYKSSLYVCNALISMYKRFRNMGIARRLFDRMFERDAVSWNAVIN-------C------------------- 219
Cdd:PLN03077 209 VHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISgyfengeCleglelfftmrelsvdpdl 288

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15217514  220 --------------------------------------------YASEGMWSEAFELFDKMWFSgvevSVITWNIISGGC 255
Cdd:PLN03077 289 mtitsvisacellgderlgremhgyvvktgfavdvsvcnsliqmYLSLGSWGEAEKVFSRMETK----DAVSWTAMISGY 364

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15217514  256 LQTGNYVGALGLISRMRNFPTSLDPVAMIIGLKACSLIGAIRLGKEIHGLAIHSSYDGIDNVRNTLITMYSKCKDLRHAL 335
Cdd:PLN03077 365 EKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKAL 444

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15217514  336 IVFRQTEENSLCTWNSIISGYAQLNKSEEASHLLREMLvAGFQPNSITLASILPLCARIANLQHGKEFHCYILRRKC-FK 414
Cdd:PLN03077 445 EVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQML-LTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIgFD 523

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15217514  415 DYtmLWNSLVDVYAKSGKI-VAAKQVSdlMSKRDEVTYTSLIDGYGNQGEGGVALALFKEMTRSGIKPDHVTVVAVLSAC 493
Cdd:PLN03077 524 GF--LPNALLDLYVRCGRMnYAWNQFN--SHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCAC 599

                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15217514  494 SHSKLVHEGERLFMKMQCEYGIRPCLQHFSCMVDLYGRAGFLAKAKDIIHNMPYKPSGATWATLLNACHIHGNTQIGKWA 573
Cdd:PLN03077 600 SRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELA 679

                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15217514  574 AEKLLEMKPENPGYYVLIANMYAAAGSWSKLAEVRTIMRDLGVKKDPGCAWIDTDSGFSLFSVGDTSSPEACNTYPLLDG 653
Cdd:PLN03077 680 AQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEG 759

                        730       740
                 ....*....|....*....|.
gi 15217514  654 LNQLMKDnAGYAINKVQSSDE 674
Cdd:PLN03077 760 FYEKMKA-SGLAGSESSSMDE 779
E_motif pfam20431
E motif; This entry represents the E motif found in plant pentatricopeptide repeat (PPR) ...
 564-626 2.06e-18

E motif; This entry represents the E motif found in plant pentatricopeptide repeat (PPR) proteins which contain a DYW deaminase domain. The DYW domain is required for RNA editing, a process that deaminates specific cytidines to uridines. This motif, together with the E+ motif, precedes the DYW domain and, although their role is not clear, they are essential in the RNA editing reaction. The E/E+ motifs may contain two degenerate PPR motifs that could be involved in RNA or protein binding.


Pssm-ID: 466580 [Multi-domain]  Cd Length: 63  Bit Score: 79.51  E-value: 2.06e-18
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15217514   564 HGNTQIGKWAAEKLLEMKPENPGYYVLIANMYAAAGSWSKLAEVRTIMRDLGVKKDPGCAWID 626
Cdd:pfam20431   1 YSNVELAEKAANILLELEKTNDGNYTLLSNIYAYAGRWKDVERIRKLMKSSGIKKRPGCSWIE 63
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 211-245 8.30e-07

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 45.91  E-value: 8.30e-07
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 15217514   211 VSWNAVINCYASEGMWSEAFELFDKMWFSGVEVSV 245
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
 
Name Accession Description Interval E-value
PLN03077 PLN03077
Protein ECB2; Provisional
 10-674 2.56e-136

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 421.18  E-value: 2.56e-136
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15217514   10 LGHLASHGHLHDAFKTfsllrLQSSSAVSDDLVLHSAASLLSACVDVRAFLAGVQVHAHCISS----GVEYHSVLVPKLV 85
Cdd:PLN03077  58 LRALCSHGQLEQALKL-----LESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSShpslGVRLGNAMLSMFV 132

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15217514   86 TFYSAFNLHNEAQSIIENsDILhplPWNVLIASYAKNELFEEVIAAYKRMVSKGIRPDAFTYPSVLKACGETLDVAFGRV 165
Cdd:PLN03077 133 RFGELVHAWYVFGKMPER-DLF---SWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGRE 208

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15217514  166 VHGSIEVSSYKSSLYVCNALISMYKRFRNMGIARRLFDRMFERDAVSWNAVIN-------C------------------- 219
Cdd:PLN03077 209 VHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISgyfengeCleglelfftmrelsvdpdl 288

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15217514  220 --------------------------------------------YASEGMWSEAFELFDKMWFSgvevSVITWNIISGGC 255
Cdd:PLN03077 289 mtitsvisacellgderlgremhgyvvktgfavdvsvcnsliqmYLSLGSWGEAEKVFSRMETK----DAVSWTAMISGY 364

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15217514  256 LQTGNYVGALGLISRMRNFPTSLDPVAMIIGLKACSLIGAIRLGKEIHGLAIHSSYDGIDNVRNTLITMYSKCKDLRHAL 335
Cdd:PLN03077 365 EKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKAL 444

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15217514  336 IVFRQTEENSLCTWNSIISGYAQLNKSEEASHLLREMLvAGFQPNSITLASILPLCARIANLQHGKEFHCYILRRKC-FK 414
Cdd:PLN03077 445 EVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQML-LTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIgFD 523

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15217514  415 DYtmLWNSLVDVYAKSGKI-VAAKQVSdlMSKRDEVTYTSLIDGYGNQGEGGVALALFKEMTRSGIKPDHVTVVAVLSAC 493
Cdd:PLN03077 524 GF--LPNALLDLYVRCGRMnYAWNQFN--SHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCAC 599

                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15217514  494 SHSKLVHEGERLFMKMQCEYGIRPCLQHFSCMVDLYGRAGFLAKAKDIIHNMPYKPSGATWATLLNACHIHGNTQIGKWA 573
Cdd:PLN03077 600 SRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELA 679

                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15217514  574 AEKLLEMKPENPGYYVLIANMYAAAGSWSKLAEVRTIMRDLGVKKDPGCAWIDTDSGFSLFSVGDTSSPEACNTYPLLDG 653
Cdd:PLN03077 680 AQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEG 759

                        730       740
                 ....*....|....*....|.
gi 15217514  654 LNQLMKDnAGYAINKVQSSDE 674
Cdd:PLN03077 760 FYEKMKA-SGLAGSESSSMDE 779
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 183-677 3.22e-101

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 324.90  E-value: 3.22e-101
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15217514  183 NALISMYKRFRNMGIARRLFDRM----FERDAVSWNAVINCYASEGMWSEAFELFDKMwfsgVEVSVITWNIISGGCLQT 258
Cdd:PLN03081 127 DALVEACIALKSIRCVKAVYWHVessgFEPDQYMMNRVLLMHVKCGMLIDARRLFDEM----PERNLASWGTIIGGLVDA 202

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15217514  259 GNYVGALGLISRMRNFPTSLDPVAMIIGLKACSLIGAIRLGKEIHGLAIHSSYDGIDNVRNTLITMYSKCKDLRHALIVF 338
Cdd:PLN03081 203 GNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVF 282

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15217514  339 RQTEENSLCTWNSIISGYAQLNKSEEASHLLREMLVAGFQPNSITLASILPLCARIANLQHGKEFHCYILRRKcFKDYTM 418
Cdd:PLN03081 283 DGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTG-FPLDIV 361

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15217514  419 LWNSLVDVYAKSGKIVAAKQVSDLMSKRDEVTYTSLIDGYGNQGEGGVALALFKEMTRSGIKPDHVTVVAVLSACSHSKL 498
Cdd:PLN03081 362 ANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGL 441

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15217514  499 VHEGERLFMKMQCEYGIRPCLQHFSCMVDLYGRAGFLAKAKDIIHNMPYKPSGATWATLLNACHIHGNTQIGKWAAEKLL 578
Cdd:PLN03081 442 SEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLY 521

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15217514  579 EMKPENPGYYVLIANMYAAAGSWSKLAEVRTIMRDLGVKKDPGCAWI---DTDSGFslFSvGDTSSPEACNTYPLLDgln 655
Cdd:PLN03081 522 GMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIevkKQDHSF--FS-GDRLHPQSREIYQKLD--- 595

                        490       500
                 ....*....|....*....|....
gi 15217514  656 QLMKD--NAGYAinkvqSSDEELL 677
Cdd:PLN03081 596 ELMKEisEYGYV-----AEENELL 614
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 10-259 1.15e-20

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 96.86  E-value: 1.15e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15217514   10 LGHLASHGHLHDAFKTFSLLRLQSSSAVSddlvlHSAASLLSACVDVRAFLAGVQVHAHCISSGVEYHSVLVPKLVTFYS 89
Cdd:PLN03081 196 IGGLVDAGNYREAFALFREMWEDGSDAEP-----RTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYS 270

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15217514   90 AFNLHNEAQSIIENSDILHPLPWNVLIASYAKNELFEEVIAAYKRMVSKGIRPDAFTYPSVLKACGETLDVAFGRVVHGS 169
Cdd:PLN03081 271 KCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAG 350

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15217514  170 IEVSSYKSSLYVCNALISMYKRFRNMGIARRLFDRMFERDAVSWNAVINCYASEGMWSEAFELFDKMWFSGVEVSVITWN 249
Cdd:PLN03081 351 LIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFL 430

                        250
                 ....*....|
gi 15217514  250 IISGGCLQTG 259
Cdd:PLN03081 431 AVLSACRYSG 440
E_motif pfam20431
E motif; This entry represents the E motif found in plant pentatricopeptide repeat (PPR) ...
 564-626 2.06e-18

E motif; This entry represents the E motif found in plant pentatricopeptide repeat (PPR) proteins which contain a DYW deaminase domain. The DYW domain is required for RNA editing, a process that deaminates specific cytidines to uridines. This motif, together with the E+ motif, precedes the DYW domain and, although their role is not clear, they are essential in the RNA editing reaction. The E/E+ motifs may contain two degenerate PPR motifs that could be involved in RNA or protein binding.


Pssm-ID: 466580 [Multi-domain]  Cd Length: 63  Bit Score: 79.51  E-value: 2.06e-18
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15217514   564 HGNTQIGKWAAEKLLEMKPENPGYYVLIANMYAAAGSWSKLAEVRTIMRDLGVKKDPGCAWID 626
Cdd:pfam20431   1 YSNVELAEKAANILLELEKTNDGNYTLLSNIYAYAGRWKDVERIRKLMKSSGIKKRPGCSWIE 63
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 319-580 1.01e-16

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 84.54  E-value: 1.01e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15217514   319 NTLITMYSKCKDLRHALIVFRQTEENSL---CT-WNSIISGYAQLNKSEEASHLLREMLVAGFQPNSITLASILPLCARI 394
Cdd:PLN03218  441 NMLMSVCASSQDIDGALRVLRLVQEAGLkadCKlYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARA 520

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15217514   395 AnlQHGKEFHCY-ILRRKCFKDYTMLWNSLVDVYAKSGKIVAAKQVSDLMS------KRDEVTYTSLIDGYGNQGEGGVA 467
Cdd:PLN03218  521 G--QVAKAFGAYgIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKaethpiDPDHITVGALMKACANAGQVDRA 598

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15217514   468 LALFKEMTRSGIKPDHVTVVAVLSACSHSKLVHEGERLFMKMQcEYGIRPCLQHFSCMVDLYGRAGFLAKAKDIIHNMP- 546
Cdd:PLN03218  599 KEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMK-KKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARk 677

                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 15217514   547 --YKPSGATWATLLNAChihgnTQIGKWaaEKLLEM 580
Cdd:PLN03218  678 qgIKLGTVSYSSLMGAC-----SNAKNW--KKALEL 706
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 446-495 2.99e-10

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 55.83  E-value: 2.99e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 15217514   446 RDEVTYTSLIDGYGNQGEGGVALALFKEMTRSGIKPDHVTVVAVLSACSH 495
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 208-255 9.04e-10

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 54.68  E-value: 9.04e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 15217514   208 RDAVSWNAVINCYASEGMWSEAFELFDKMWFSGVEVSVITWNIISGGC 255
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGL 48
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 112-154 1.53e-07

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 48.13  E-value: 1.53e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 15217514   112 WNVLIASYAKNELFEEVIAAYKRMVSKGIRPDAFTYPSVLKAC 154
Cdd:pfam13041   6 YNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGL 48
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 211-245 8.30e-07

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 45.91  E-value: 8.30e-07
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 15217514   211 VSWNAVINCYASEGMWSEAFELFDKMWFSGVEVSV 245
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 115-400 1.14e-06

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 52.19  E-value: 1.14e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15217514   115 LIASYAKNELFEEVIAAYKRMVSKGIRPDAFTYPSVLKACGETLDV--AFGrvVHGSIEVSSYKSSLYVCNALISMYKRf 192
Cdd:PLN03218  478 LISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVakAFG--AYGIMRSKNVKPDRVVFNALISACGQ- 554

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15217514   193 rnMGIARRLFDRMFER---------DAVSWNAVINCYASEGMWSEAFELFDKMWFSGVEVSVITWNIISGGCLQTGNYVG 263
Cdd:PLN03218  555 --SGAVDRAFDVLAEMkaethpidpDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDF 632

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15217514   264 ALGLISRMRN--------FPTSLDPVAMIIGL--KACSLIGAIRLGKEIHGLAIHSSydgidnvrntLITMYSKCKDLRH 333
Cdd:PLN03218  633 ALSIYDDMKKkgvkpdevFFSALVDVAGHAGDldKAFEILQDARKQGIKLGTVSYSS----------LMGACSNAKNWKK 702

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 15217514   334 ALIVFRQTEENSL----CTWNSIISGYAQLNKSEEASHLLREMLVAGFQPNSITLASILPLCARIANLQHG 400
Cdd:PLN03218  703 ALELYEDIKSIKLrptvSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVG 773
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 211-241 1.38e-06

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 45.15  E-value: 1.38e-06
                          10        20        30
                  ....*....|....*....|....*....|.
gi 15217514   211 VSWNAVINCYASEGMWSEAFELFDKMWFSGV 241
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 449-482 1.38e-06

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 45.14  E-value: 1.38e-06
                          10        20        30
                  ....*....|....*....|....*....|....
gi 15217514   449 VTYTSLIDGYGNQGEGGVALALFKEMTRSGIKPD 482
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 348-383 1.52e-06

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 45.43  E-value: 1.52e-06
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 15217514   348 TWNSIISGYAQLNKSEEASHLLREMLVAGFQPNSIT 383
Cdd:pfam13041   5 TYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYT 40
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 132-528 2.00e-06

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 51.42  E-value: 2.00e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15217514   132 YKRMVSKGIRPDAF------------TYPSVLKACGETLDVAFGRVVHGSIEVSSYKSSLYVCNALIS----------MY 189
Cdd:PLN03218  413 FKACKKQRAVKEAFrfaklirnptlsTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLIStcaksgkvdaMF 492

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15217514   190 KRFRNMGIARrlfdrmFERDAVSWNAVINCYASEGMWSEAFELFDKMWFSGVEVSVITWNIISGGCLQTGNYVGALGLIS 269
Cdd:PLN03218  493 EVFHEMVNAG------VEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLA 566

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15217514   270 RMRNFPTSLDPVAMIIG--LKACSLIGAIRLGKEIHGLAIHSSYDGIDNVRNTLITMYSKCKDLRHALIVFRQTEENSLC 347
Cdd:PLN03218  567 EMKAETHPIDPDHITVGalMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVK 646

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15217514   348 TWNSIIS------GYAQlnKSEEASHLLREMLVAGFQPNSITLASILPLCARIANlqhgkefhcyilrrkcfkdytmlWN 421
Cdd:PLN03218  647 PDEVFFSalvdvaGHAG--DLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKN-----------------------WK 701

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15217514   422 SLVDVYAKSGKIVAAKQVSdlmskrdevTYTSLIDGY--GNQGEGgvALALFKEMTRSGIKPDHVTVVAVLSACSHSKLV 499
Cdd:PLN03218  702 KALELYEDIKSIKLRPTVS---------TMNALITALceGNQLPK--ALEVLSEMKRLGLCPNTITYSILLVASERKDDA 770

                         410       420
                  ....*....|....*....|....*....
gi 15217514   500 HEGERLFMKMQCEyGIRPCLQHFSCMVDL 528
Cdd:PLN03218  771 DVGLDLLSQAKED-GIKPNLVMCRCITGL 798
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 420-460 1.84e-05

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 42.35  E-value: 1.84e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 15217514   420 WNSLVDVYAKSGKIVAAKQVSDLMSKR----DEVTYTSLIDGYGN 460
Cdd:pfam13041   6 YNTLINGYCKKGKVEEAFKLFNEMKKRgvkpNVYTYTILINGLCK 50
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 112-144 2.28e-05

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 41.67  E-value: 2.28e-05
                          10        20        30
                  ....*....|....*....|....*....|...
gi 15217514   112 WNVLIASYAKNELFEEVIAAYKRMVSKGIRPDA 144
Cdd:TIGR00756   3 YNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 347-381 2.33e-05

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 41.67  E-value: 2.33e-05
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 15217514   347 CTWNSIISGYAQLNKSEEASHLLREMLVAGFQPNS 381
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 449-479 2.35e-05

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 41.68  E-value: 2.35e-05
                          10        20        30
                  ....*....|....*....|....*....|.
gi 15217514   449 VTYTSLIDGYGNQGEGGVALALFKEMTRSGI 479
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 204-236 2.51e-05

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 41.56  E-value: 2.51e-05
                          10        20        30
                  ....*....|....*....|....*....|...
gi 15217514   204 RMFERDAVSWNAVINCYASEGMWSEAFELFDKM 236
Cdd:pfam12854   1 KGLKPDVVTYNTLINGLCRAGRVDEAFELLDEM 33
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 470-530 4.17e-05

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 41.96  E-value: 4.17e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 15217514   470 LFKEMTRSGIKPDHVTVVAVLSACSHSKLVHEGERLFMKMQcEYGIRPCLQHFSCMVDLYG 530
Cdd:pfam13812   2 ILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMK-KKGIKPTLDTYNAILGVIG 61
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 348-377 1.15e-04

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 39.76  E-value: 1.15e-04
                          10        20        30
                  ....*....|....*....|....*....|
gi 15217514   348 TWNSIISGYAQLNKSEEASHLLREMLVAGF 377
Cdd:pfam01535   2 TYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 447-493 2.80e-04

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 39.26  E-value: 2.80e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 15217514   447 DEVTYTSLIDGYGNQGEGGVALALFKEMTRSGIKPDHVTVVAVLSAC 493
Cdd:pfam13812  14 NVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVI 60
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 112-140 4.55e-04

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 37.83  E-value: 4.55e-04
                          10        20
                  ....*....|....*....|....*....
gi 15217514   112 WNVLIASYAKNELFEEVIAAYKRMVSKGI 140
Cdd:pfam01535   3 YNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 445-475 6.43e-04

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 37.71  E-value: 6.43e-04
                          10        20        30
                  ....*....|....*....|....*....|.
gi 15217514   445 KRDEVTYTSLIDGYGNQGEGGVALALFKEMT 475
Cdd:pfam12854   4 KPDVVTYNTLINGLCRAGRVDEAFELLDEME 34
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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