NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|30698765|ref|NP_177248|]
View 

homeobox-leucine zipper protein 18 [Arabidopsis thaliana]

Protein Classification

homeodomain and HALZ domain-containing protein( domain architecture ID 11267597)

homeodomain and HALZ domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 66-122 3.91e-17

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


:

Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 71.90  E-value: 3.91e-17
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 30698765     66 RRRKKLRLTKEQSHLLEESFIQNHTLTPKQKKDLATFLKLSQRQVEVWFQNRRARSK 122
Cdd:smart00389   1 KRRKRTSFTPEQLEELEKEFQKNPYPSREEREELAKKLGLSERQVKVWFQNRRAKWK 57
HALZ super family cl46918
homeobox associated leucin zipper;
124-167 1.75e-13

homeobox associated leucin zipper;


The actual alignment was detected with superfamily member smart00340:

Pssm-ID: 128634  Cd Length: 44  Bit Score: 62.08  E-value: 1.75e-13
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....
gi 30698765    124 KHTEMECEYLKRWFGSLKEQNRRLQIEVEELRALKPSSTSALTM 167
Cdd:smart00340   1 KQTEVDCELLKRCCESLTEENRRLQKEVQELRALKLSPPLYMQH 44
 
Name Accession Description Interval E-value
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 66-122 3.91e-17

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 71.90  E-value: 3.91e-17
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 30698765     66 RRRKKLRLTKEQSHLLEESFIQNHTLTPKQKKDLATFLKLSQRQVEVWFQNRRARSK 122
Cdd:smart00389   1 KRRKRTSFTPEQLEELEKEFQKNPYPSREEREELAKKLGLSERQVKVWFQNRRAKWK 57
Homeodomain pfam00046
Homeodomain;
67-122 2.38e-16

Homeodomain;


Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 69.84  E-value: 2.38e-16
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 30698765    67 RRKKLRLTKEQSHLLEESFIQNHTLTPKQKKDLATFLKLSQRQVEVWFQNRRARSK 122
Cdd:pfam00046   1 RRKRTTFTPEQLEELEKEFQENPYPSAEEREELAAQLGLTERQVKVWFQNRRAKWK 56
homeodomain cd00086
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...
 67-125 1.83e-15

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.


Pssm-ID: 238039 [Multi-domain]  Cd Length: 59  Bit Score: 67.65  E-value: 1.83e-15
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*....
gi 30698765  67 RRKKLRLTKEQSHLLEESFIQNHTLTPKQKKDLATFLKLSQRQVEVWFQNRRARSKLKH 125
Cdd:cd00086   1 RRKRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLKRSE 59
HALZ smart00340
homeobox associated leucin zipper;
124-167 1.75e-13

homeobox associated leucin zipper;


Pssm-ID: 128634  Cd Length: 44  Bit Score: 62.08  E-value: 1.75e-13
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....
gi 30698765    124 KHTEMECEYLKRWFGSLKEQNRRLQIEVEELRALKPSSTSALTM 167
Cdd:smart00340   1 KQTEVDCELLKRCCESLTEENRRLQKEVQELRALKLSPPLYMQH 44
COG5576 COG5576
Homeodomain-containing transcription factor [Transcription];
60-124 9.39e-12

Homeodomain-containing transcription factor [Transcription];


Pssm-ID: 227863 [Multi-domain]  Cd Length: 156  Bit Score: 60.53  E-value: 9.39e-12
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 30698765  60 DSNSGGRRRKKLRLTKEQSHLLEESFIQNHTLTPKQKKDLATFLKLSQRQVEVWFQNRRARSKLK 124
Cdd:COG5576  45 QDGSSPPKSKRRRTTDEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQIWFQNKRAKEKKK 109
HALZ pfam02183
Homeobox associated leucine zipper;
124-158 1.32e-05

Homeobox associated leucine zipper;


Pssm-ID: 460477 [Multi-domain]  Cd Length: 42  Bit Score: 40.97  E-value: 1.32e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 30698765   124 KHTEMECEYLKRWFGSLK-------EQNRRLQIEVEELRALK 158
Cdd:pfam02183   1 KQLERDYDVLKASYDALKsdfdslkKENQKLQAELQELKEKL 42
 
Name Accession Description Interval E-value
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 66-122 3.91e-17

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 71.90  E-value: 3.91e-17
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 30698765     66 RRRKKLRLTKEQSHLLEESFIQNHTLTPKQKKDLATFLKLSQRQVEVWFQNRRARSK 122
Cdd:smart00389   1 KRRKRTSFTPEQLEELEKEFQKNPYPSREEREELAKKLGLSERQVKVWFQNRRAKWK 57
Homeodomain pfam00046
Homeodomain;
67-122 2.38e-16

Homeodomain;


Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 69.84  E-value: 2.38e-16
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 30698765    67 RRKKLRLTKEQSHLLEESFIQNHTLTPKQKKDLATFLKLSQRQVEVWFQNRRARSK 122
Cdd:pfam00046   1 RRKRTTFTPEQLEELEKEFQENPYPSAEEREELAAQLGLTERQVKVWFQNRRAKWK 56
homeodomain cd00086
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...
 67-125 1.83e-15

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.


Pssm-ID: 238039 [Multi-domain]  Cd Length: 59  Bit Score: 67.65  E-value: 1.83e-15
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*....
gi 30698765  67 RRKKLRLTKEQSHLLEESFIQNHTLTPKQKKDLATFLKLSQRQVEVWFQNRRARSKLKH 125
Cdd:cd00086   1 RRKRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLKRSE 59
HALZ smart00340
homeobox associated leucin zipper;
124-167 1.75e-13

homeobox associated leucin zipper;


Pssm-ID: 128634  Cd Length: 44  Bit Score: 62.08  E-value: 1.75e-13
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....
gi 30698765    124 KHTEMECEYLKRWFGSLKEQNRRLQIEVEELRALKPSSTSALTM 167
Cdd:smart00340   1 KQTEVDCELLKRCCESLTEENRRLQKEVQELRALKLSPPLYMQH 44
COG5576 COG5576
Homeodomain-containing transcription factor [Transcription];
60-124 9.39e-12

Homeodomain-containing transcription factor [Transcription];


Pssm-ID: 227863 [Multi-domain]  Cd Length: 156  Bit Score: 60.53  E-value: 9.39e-12
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 30698765  60 DSNSGGRRRKKLRLTKEQSHLLEESFIQNHTLTPKQKKDLATFLKLSQRQVEVWFQNRRARSKLK 124
Cdd:COG5576  45 QDGSSPPKSKRRRTTDEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQIWFQNKRAKEKKK 109
HALZ pfam02183
Homeobox associated leucine zipper;
124-158 1.32e-05

Homeobox associated leucine zipper;


Pssm-ID: 460477 [Multi-domain]  Cd Length: 42  Bit Score: 40.97  E-value: 1.32e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 30698765   124 KHTEMECEYLKRWFGSLK-------EQNRRLQIEVEELRALK 158
Cdd:pfam02183   1 KQLERDYDVLKASYDALKsdfdslkKENQKLQAELQELKEKL 42
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH