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Conserved domains on  [gi|15222362|ref|NP_177115|]
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myb domain protein 105 [Arabidopsis thaliana]

Protein Classification

SANT/Myb-like DNA-binding domain-containing protein( domain architecture ID 999994)

SANT (SWI3, ADA2, N-CoR and TFIIIB)/Myb-like DNA-binding domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN03091 super family cl33633
hypothetical protein; Provisional
 96-233 7.89e-25

hypothetical protein; Provisional


The actual alignment was detected with superfamily member PLN03091:

Pssm-ID: 215570 [Multi-domain]  Cd Length: 459  Bit Score: 104.29  E-value: 7.89e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222362   96 SCGHSSKasVSRGHWRPAEDTKLKELVAVYGPQNWNLIAeKLQG--RSGKSCRLRWFNQLDPRINRRAFTEEEEERLMQA 173
Cdd:PLN03091   5 SCCYKQK--LRKGLWSPEEDEKLLRHITKYGHGCWSSVP-KQAGlqRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIEL 81

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222362  174 HRLYGNKWAMIARLFPGRTDNSVKNHWHVIMARKFREQSssyrrrktmvslkplINPNPH 233
Cdd:PLN03091  82 HAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRG---------------IDPNTH 126
 
Name Accession Description Interval E-value
PLN03091 PLN03091
hypothetical protein; Provisional
 96-233 7.89e-25

hypothetical protein; Provisional


Pssm-ID: 215570 [Multi-domain]  Cd Length: 459  Bit Score: 104.29  E-value: 7.89e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222362   96 SCGHSSKasVSRGHWRPAEDTKLKELVAVYGPQNWNLIAeKLQG--RSGKSCRLRWFNQLDPRINRRAFTEEEEERLMQA 173
Cdd:PLN03091   5 SCCYKQK--LRKGLWSPEEDEKLLRHITKYGHGCWSSVP-KQAGlqRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIEL 81

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222362  174 HRLYGNKWAMIARLFPGRTDNSVKNHWHVIMARKFREQSssyrrrktmvslkplINPNPH 233
Cdd:PLN03091  82 HAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRG---------------IDPNTH 126
REB1 COG5147
Myb superfamily proteins, including transcription factors and mRNA splicing factors ...
 108-255 1.77e-18

Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning];


Pssm-ID: 227476 [Multi-domain]  Cd Length: 512  Bit Score: 85.99  E-value: 1.77e-18
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222362 108 GHWRPAEDTKLKELVAVYGPQNWNLIAEKLQGRSGKSCRLRWFNQLDPRINRRAFTEEEEERLMQAHRLYGNKWAMIARL 187
Cdd:COG5147  21 GSWKRTEDEDLKALVKKLGPNNWSKVASLLISSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQWSTIADY 100

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222362 188 FPGRTDNSVKNHWHVIMARKFREQSSSYRRRKTMVSLKPLIN-----PNPHIFNDFDPT-------RLALTHLASSDHKQ 255
Cdd:COG5147 101 KDRRTAQQCVERYVNTLEDLSSTHDSKLQRRNEFDKIDPFNEnsarrPDIYEDELLEREvnreasyRLRVPRVSKADVKP 180
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 159-201 1.16e-15

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 69.84  E-value: 1.16e-15
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 15222362   159 RRAFTEEEEERLMQAHRLYGNKWAMIARLFPGRTDNSVKNHWH 201
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLGNRWKKIAKLLPGRTDNQCKNRWQ 43
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
107-155 3.52e-12

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 60.32  E-value: 3.52e-12
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 15222362    107 RGHWRPAEDTKLKELVAVYGPQNWNLIAEKLQGRSGKSCRLRWFNQLDP 155
Cdd:smart00717   1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWRNLLKP 49
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 110-151 4.35e-12

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 59.90  E-value: 4.35e-12
                        10        20        30        40
                ....*....|....*....|....*....|....*....|..
gi 15222362 110 WRPAEDTKLKELVAVYGPQNWNLIAEKLQGRSGKSCRLRWFN 151
Cdd:cd00167   2 WTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRN 43
 
Name Accession Description Interval E-value
PLN03091 PLN03091
hypothetical protein; Provisional
 96-233 7.89e-25

hypothetical protein; Provisional


Pssm-ID: 215570 [Multi-domain]  Cd Length: 459  Bit Score: 104.29  E-value: 7.89e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222362   96 SCGHSSKasVSRGHWRPAEDTKLKELVAVYGPQNWNLIAeKLQG--RSGKSCRLRWFNQLDPRINRRAFTEEEEERLMQA 173
Cdd:PLN03091   5 SCCYKQK--LRKGLWSPEEDEKLLRHITKYGHGCWSSVP-KQAGlqRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIEL 81

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222362  174 HRLYGNKWAMIARLFPGRTDNSVKNHWHVIMARKFREQSssyrrrktmvslkplINPNPH 233
Cdd:PLN03091  82 HAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRG---------------IDPNTH 126
PLN03212 PLN03212
Transcription repressor MYB5; Provisional
 85-211 1.52e-24

Transcription repressor MYB5; Provisional


Pssm-ID: 178751 [Multi-domain]  Cd Length: 249  Bit Score: 99.77  E-value: 1.52e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222362   85 NCNKKDTTVYRSCGHSSKASVSRGHWRPAEDTKLKELVAVYGPQNWNLIAEKLQG-RSGKSCRLRWFNQLDPRINRRAFT 163
Cdd:PLN03212   3 SCGGKKPVSKKTTPCCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLlRCGKSCRLRWMNYLRPSVKRGGIT 82

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 15222362  164 EEEEERLMQAHRLYGNKWAMIARLFPGRTDNSVKNHWHVIMARKFREQ 211
Cdd:PLN03212  83 SDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQ 130
REB1 COG5147
Myb superfamily proteins, including transcription factors and mRNA splicing factors ...
 108-255 1.77e-18

Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning];


Pssm-ID: 227476 [Multi-domain]  Cd Length: 512  Bit Score: 85.99  E-value: 1.77e-18
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222362 108 GHWRPAEDTKLKELVAVYGPQNWNLIAEKLQGRSGKSCRLRWFNQLDPRINRRAFTEEEEERLMQAHRLYGNKWAMIARL 187
Cdd:COG5147  21 GSWKRTEDEDLKALVKKLGPNNWSKVASLLISSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQWSTIADY 100

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222362 188 FPGRTDNSVKNHWHVIMARKFREQSSSYRRRKTMVSLKPLIN-----PNPHIFNDFDPT-------RLALTHLASSDHKQ 255
Cdd:COG5147 101 KDRRTAQQCVERYVNTLEDLSSTHDSKLQRRNEFDKIDPFNEnsarrPDIYEDELLEREvnreasyRLRVPRVSKADVKP 180
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 159-201 1.16e-15

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 69.84  E-value: 1.16e-15
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 15222362   159 RRAFTEEEEERLMQAHRLYGNKWAMIARLFPGRTDNSVKNHWH 201
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLGNRWKKIAKLLPGRTDNQCKNRWQ 43
Myb_DNA-bind_6 pfam13921
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 110-170 6.77e-14

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 372817 [Multi-domain]  Cd Length: 60  Bit Score: 65.41  E-value: 6.77e-14
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 15222362   110 WRPAEDTKLKELVAVYGpQNWNLIAEKLQGRSGKSCRLRWFNQLDPRINRRAFTEEEEERL 170
Cdd:pfam13921   1 WTEEEDEKLLKLVEKYG-NDWKQIAKELGRRTPKQCFDRWRRKLNPKISRGPWSKEEDQRL 60
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 107-153 9.14e-13

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 61.75  E-value: 9.14e-13
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 15222362   107 RGHWRPAEDTKLKELVAVYGPqNWNLIAEKLQGRSGKSCRLRWFNQL 153
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLGN-RWKKIAKLLPGRTDNQCKNRWQNYL 46
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
107-155 3.52e-12

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 60.32  E-value: 3.52e-12
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 15222362    107 RGHWRPAEDTKLKELVAVYGPQNWNLIAEKLQGRSGKSCRLRWFNQLDP 155
Cdd:smart00717   1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWRNLLKP 49
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 110-151 4.35e-12

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 59.90  E-value: 4.35e-12
                        10        20        30        40
                ....*....|....*....|....*....|....*....|..
gi 15222362 110 WRPAEDTKLKELVAVYGPQNWNLIAEKLQGRSGKSCRLRWFN 151
Cdd:cd00167   2 WTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRN 43
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 161-201 1.65e-11

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 58.36  E-value: 1.65e-11
                        10        20        30        40
                ....*....|....*....|....*....|....*....|..
gi 15222362 161 AFTEEEEERLMQAHRLYG-NKWAMIARLFPGRTDNSVKNHWH 201
Cdd:cd00167   1 PWTEEEDELLLEAVKKYGkNNWEKIAKELPGRTPKQCRERWR 42
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
159-206 3.12e-11

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 57.62  E-value: 3.12e-11
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 15222362    159 RRAFTEEEEERLMQAHRLYG-NKWAMIARLFPGRTDNSVKNHWHVIMAR 206
Cdd:smart00717   1 KGEWTEEEDELLIELVKKYGkNNWEKIAKELPGRTAEQCRERWRNLLKP 49
Myb_DNA-bind_6 pfam13921
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 162-201 3.53e-07

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 372817 [Multi-domain]  Cd Length: 60  Bit Score: 46.53  E-value: 3.53e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 15222362   162 FTEEEEERLMQAHRLYGNKWAMIARLFPGRTDNSVKNHWH 201
Cdd:pfam13921   1 WTEEEDEKLLKLVEKYGNDWKQIAKELGRRTPKQCFDRWR 40
SANT_CDC5_II cd11659
SANT/myb-like DNA-binding domain of Cell Division Cycle 5-Like Protein repeat II; In humans, ...
 155-194 1.61e-04

SANT/myb-like DNA-binding domain of Cell Division Cycle 5-Like Protein repeat II; In humans, cell division cycle 5-like protein (CDC5) functions in pre-mRNA splicing in cell cycle control. The DNA-binding, myb-like domain of CDC5 is a member of the SANT/myb group. SANT is named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. The SANT domain resembles the 3 alpha-helix bundle of DNA-binding Myb domains and is found in a diverse set of proteins.


Pssm-ID: 212557 [Multi-domain]  Cd Length: 53  Bit Score: 38.83  E-value: 1.61e-04
                        10        20        30        40
                ....*....|....*....|....*....|....*....|
gi 15222362 155 PRINRRAFTEEEEERLMQAHRLYGNKWAMIARLFpGRTDN 194
Cdd:cd11659   1 PSIKKTEWTREEDEKLLHLAKLLPTQWRTIAPIV-GRTAQ 39
Myb_DNA-bind_7 pfam15963
Myb DNA-binding like;
156-198 4.25e-03

Myb DNA-binding like;


Pssm-ID: 464956 [Multi-domain]  Cd Length: 85  Bit Score: 35.59  E-value: 4.25e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 15222362   156 RINRRAFTEEEEERLMQAHRLYGNKWAMIARLFPGRTDNSVKN 198
Cdd:pfam15963   5 RKKTKRWSKEETELFYKALSMFGTDFSLIAQLFPGRTRRQIKL 47
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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