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Conserved domains on  [gi|22330359|ref|NP_176302|]
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low-molecular-weight cysteine-rich 66 [Arabidopsis thaliana]

Protein Classification

gamma-thionin family protein( domain architecture ID 10447803)

gamma-thionin family protein adopting the "knottin" fold, a stable cysteine-rich scaffold, in which one disulfide bridge crosses the macrocycle made by two other disulfide bridges and the connecting backbone segments, found in plant lectins/antimicrobial peptides, plant proteinase/amylase inhibitors, plant gamma-thionins, and arthropod defensins

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Gamma-thionin pfam00304
Gamma-thionin family;
33-76 2.09e-15

Gamma-thionin family;


:

Pssm-ID: 395240  Cd Length: 44  Bit Score: 63.06  E-value: 2.09e-15
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 22330359   33 ETSSNLFNGPCLSSSNCANVCHNEGFSDGDCRGFRRRCLCTRPC 76
Cdd:pfam00304  1 ESKSGRFKGPCLSDSNCANVCINEGFGGGHCSGPRRRCFCTRPC 44
 
Name Accession Description Interval E-value
Gamma-thionin pfam00304
Gamma-thionin family;
33-76 2.09e-15

Gamma-thionin family;


Pssm-ID: 395240  Cd Length: 44  Bit Score: 63.06  E-value: 2.09e-15
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 22330359   33 ETSSNLFNGPCLSSSNCANVCHNEGFSDGDCRGFRRRCLCTRPC 76
Cdd:pfam00304  1 ESKSGRFKGPCLSDSNCANVCINEGFGGGHCSGPRRRCFCTRPC 44
Knot1 smart00505
Knottins; Knottins, representing plant lectins/antimicrobial peptides, plant proteinase ...
 31-74 1.07e-08

Knottins; Knottins, representing plant lectins/antimicrobial peptides, plant proteinase/amylase inhibitors, plant gamma-thionins and arthropod defensins.


Pssm-ID: 214700  Cd Length: 45  Bit Score: 45.92  E-value: 1.07e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 22330359    31 TCETSSNLFNGPCLSSS-NCANVCHNEGFSDGDCRGFRRRCLCTR 74
Cdd:smart00505  1 TCDGYSVTFSGNCKSSCaLCAKLCKKKGAKGGYCRGTTRRCFCYK 45
Knot1 cd00107
The "knottin" fold is stable cysteine-rich scaffold, in which one disulfide bridge crosses the ...
 41-73 4.52e-06

The "knottin" fold is stable cysteine-rich scaffold, in which one disulfide bridge crosses the macrocycle made by two other disulfide bridges and the connecting backbone segments. Members include plant lectins/antimicrobial peptides, plant proteinase/amylase inhibitors, plant gamma-thionins, and arthropod defensins.


Pssm-ID: 238055  Cd Length: 33  Bit Score: 39.26  E-value: 4.52e-06
                       10        20        30
               ....*....|....*....|....*....|...
gi 22330359 41 GPCLSSSNCANVCHNEGFSDGDCRGFRRRCLCT 73
Cdd:cd00107  1 GTCFSDSYCDKECKKKGASGGYCYGQGLACWCY 33
 
Name Accession Description Interval E-value
Gamma-thionin pfam00304
Gamma-thionin family;
33-76 2.09e-15

Gamma-thionin family;


Pssm-ID: 395240  Cd Length: 44  Bit Score: 63.06  E-value: 2.09e-15
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 22330359   33 ETSSNLFNGPCLSSSNCANVCHNEGFSDGDCRGFRRRCLCTRPC 76
Cdd:pfam00304  1 ESKSGRFKGPCLSDSNCANVCINEGFGGGHCSGPRRRCFCTRPC 44
Knot1 smart00505
Knottins; Knottins, representing plant lectins/antimicrobial peptides, plant proteinase ...
 31-74 1.07e-08

Knottins; Knottins, representing plant lectins/antimicrobial peptides, plant proteinase/amylase inhibitors, plant gamma-thionins and arthropod defensins.


Pssm-ID: 214700  Cd Length: 45  Bit Score: 45.92  E-value: 1.07e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 22330359    31 TCETSSNLFNGPCLSSS-NCANVCHNEGFSDGDCRGFRRRCLCTR 74
Cdd:smart00505  1 TCDGYSVTFSGNCKSSCaLCAKLCKKKGAKGGYCRGTTRRCFCYK 45
Knot1 cd00107
The "knottin" fold is stable cysteine-rich scaffold, in which one disulfide bridge crosses the ...
 41-73 4.52e-06

The "knottin" fold is stable cysteine-rich scaffold, in which one disulfide bridge crosses the macrocycle made by two other disulfide bridges and the connecting backbone segments. Members include plant lectins/antimicrobial peptides, plant proteinase/amylase inhibitors, plant gamma-thionins, and arthropod defensins.


Pssm-ID: 238055  Cd Length: 33  Bit Score: 39.26  E-value: 4.52e-06
                       10        20        30
               ....*....|....*....|....*....|...
gi 22330359 41 GPCLSSSNCANVCHNEGFSDGDCRGFRRRCLCT 73
Cdd:cd00107  1 GTCFSDSYCDKECKKKGASGGYCYGQGLACWCY 33
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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