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Conserved domains on  [gi|15223612|ref|NP_176068|]
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myb domain protein 50 [Arabidopsis thaliana]

Protein Classification

SANT/Myb-like DNA-binding domain-containing protein( domain architecture ID 999994)

SANT (SWI3, ADA2, N-CoR and TFIIIB)/Myb-like DNA-binding domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN03091 super family cl33633
hypothetical protein; Provisional
 1-310 6.53e-105

hypothetical protein; Provisional


The actual alignment was detected with superfamily member PLN03091:

Pssm-ID: 215570 [Multi-domain]  Cd Length: 459  Bit Score: 314.22  E-value: 6.53e-105
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15223612    1 MKRHSCCYKQKLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLERCGKSCRLRWINYLRPDLKRGAFSSEEQNLIVE 80
Cdd:PLN03091   1 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15223612   81 LHAVLGNRWSQIAARLPGRTDNEIKNLWNSCIKKKLMKKGIDPITHKPLSEV---------------------------- 132
Cdd:PLN03091  81 LHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHKPLSEVengedknpptddksdkassvvsnelnll 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15223612  133 --------------------------------GKETNRSDNNNSTS---FSSETNQDLFVKK-------------TSDFA 164
Cdd:PLN03091 161 kadnskplaalqekrsssispagyqlevesssSSKINNSNNNNHSNsnlMTPTPNKDFFLDRfttshessttscrPSDLV 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15223612  165 EYSAFQK--------------------EESNSVSLRNSLSS-MIPTqfnIDDGSVSNAGFDTQVCVKPSIILlpPPNNT- 222
Cdd:PLN03091 241 GHFPFQQlnyasnarlstnpnptlwfsQNSKSFEMNSEFSSsMTPS---ILPPSVTSSFLPTPMSYKPSISL--PSDNPs 315

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15223612  223 --SSTVSGQDHVNVSEPNWESNSGTTS----------------------------------HLNNPGMEEMKWSeEYLNE 266
Cdd:PLN03091 316 ipSFTVNGVRNWEAGAFSNNSNSSNGSsssielqsnssffensifswgladcgksdkeaqiHLLESDPEDIKWP-EYLQN 394

                        410       420       430       440       450       460
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15223612  267 SLF---------STQVY--VKSETDF---NSNIAFPWSQS-----QACDVFPKDLQRMAFSFG 310
Cdd:PLN03091 395 PFLmaatlqnqtPQPLYneIKPETHFiteGSSTMWPHNQQqqeplQNPDIYTKDLQRLTAAFG 457
 
Name Accession Description Interval E-value
PLN03091 PLN03091
hypothetical protein; Provisional
 1-310 6.53e-105

hypothetical protein; Provisional


Pssm-ID: 215570 [Multi-domain]  Cd Length: 459  Bit Score: 314.22  E-value: 6.53e-105
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15223612    1 MKRHSCCYKQKLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLERCGKSCRLRWINYLRPDLKRGAFSSEEQNLIVE 80
Cdd:PLN03091   1 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15223612   81 LHAVLGNRWSQIAARLPGRTDNEIKNLWNSCIKKKLMKKGIDPITHKPLSEV---------------------------- 132
Cdd:PLN03091  81 LHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHKPLSEVengedknpptddksdkassvvsnelnll 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15223612  133 --------------------------------GKETNRSDNNNSTS---FSSETNQDLFVKK-------------TSDFA 164
Cdd:PLN03091 161 kadnskplaalqekrsssispagyqlevesssSSKINNSNNNNHSNsnlMTPTPNKDFFLDRfttshessttscrPSDLV 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15223612  165 EYSAFQK--------------------EESNSVSLRNSLSS-MIPTqfnIDDGSVSNAGFDTQVCVKPSIILlpPPNNT- 222
Cdd:PLN03091 241 GHFPFQQlnyasnarlstnpnptlwfsQNSKSFEMNSEFSSsMTPS---ILPPSVTSSFLPTPMSYKPSISL--PSDNPs 315

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15223612  223 --SSTVSGQDHVNVSEPNWESNSGTTS----------------------------------HLNNPGMEEMKWSeEYLNE 266
Cdd:PLN03091 316 ipSFTVNGVRNWEAGAFSNNSNSSNGSsssielqsnssffensifswgladcgksdkeaqiHLLESDPEDIKWP-EYLQN 394

                        410       420       430       440       450       460
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15223612  267 SLF---------STQVY--VKSETDF---NSNIAFPWSQS-----QACDVFPKDLQRMAFSFG 310
Cdd:PLN03091 395 PFLmaatlqnqtPQPLYneIKPETHFiteGSSTMWPHNQQqqeplQNPDIYTKDLQRLTAAFG 457
REB1 COG5147
Myb superfamily proteins, including transcription factors and mRNA splicing factors ...
 8-146 4.55e-15

Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning];


Pssm-ID: 227476 [Multi-domain]  Cd Length: 512  Bit Score: 75.59  E-value: 4.55e-15
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15223612   8 YKQKLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLeRCGKSCRLRWINYLRPDLKRGAFSSEEQNLIVELHAVLGN 87
Cdd:COG5147  14 MQTKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLIS-STGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGT 92

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*....
gi 15223612  88 RWSQIAARLPGRTDNEIKNLWNSCIKKKLMKKGIDPIThkpLSEVGKEtnrSDNNNSTS 146
Cdd:COG5147  93 QWSTIADYKDRRTAQQCVERYVNTLEDLSSTHDSKLQR---RNEFDKI---DPFNENSA 145
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 14-61 2.76e-13

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 63.29  E-value: 2.76e-13
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 15223612    14 KGLWSPEEDEKLLNYITKHGhGCWSSVPKLAGLeRCGKSCRLRWINYL 61
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLG-NRWKKIAKLLPG-RTDNQCKNRWQNYL 46
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 17-61 2.43e-11

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 57.59  E-value: 2.43e-11
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*
gi 15223612  17 WSPEEDEKLLNYITKHGHGCWSSVPKLAGLeRCGKSCRLRWINYL 61
Cdd:cd00167   2 WTEEEDELLLEAVKKYGKNNWEKIAKELPG-RTPKQCRERWRNLL 45
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
14-63 4.27e-11

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 57.23  E-value: 4.27e-11
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 15223612     14 KGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGlERCGKSCRLRWINYLRP 63
Cdd:smart00717   1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELP-GRTAEQCRERWRNLLKP 49
 
Name Accession Description Interval E-value
PLN03091 PLN03091
hypothetical protein; Provisional
 1-310 6.53e-105

hypothetical protein; Provisional


Pssm-ID: 215570 [Multi-domain]  Cd Length: 459  Bit Score: 314.22  E-value: 6.53e-105
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15223612    1 MKRHSCCYKQKLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLERCGKSCRLRWINYLRPDLKRGAFSSEEQNLIVE 80
Cdd:PLN03091   1 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15223612   81 LHAVLGNRWSQIAARLPGRTDNEIKNLWNSCIKKKLMKKGIDPITHKPLSEV---------------------------- 132
Cdd:PLN03091  81 LHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHKPLSEVengedknpptddksdkassvvsnelnll 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15223612  133 --------------------------------GKETNRSDNNNSTS---FSSETNQDLFVKK-------------TSDFA 164
Cdd:PLN03091 161 kadnskplaalqekrsssispagyqlevesssSSKINNSNNNNHSNsnlMTPTPNKDFFLDRfttshessttscrPSDLV 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15223612  165 EYSAFQK--------------------EESNSVSLRNSLSS-MIPTqfnIDDGSVSNAGFDTQVCVKPSIILlpPPNNT- 222
Cdd:PLN03091 241 GHFPFQQlnyasnarlstnpnptlwfsQNSKSFEMNSEFSSsMTPS---ILPPSVTSSFLPTPMSYKPSISL--PSDNPs 315

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15223612  223 --SSTVSGQDHVNVSEPNWESNSGTTS----------------------------------HLNNPGMEEMKWSeEYLNE 266
Cdd:PLN03091 316 ipSFTVNGVRNWEAGAFSNNSNSSNGSsssielqsnssffensifswgladcgksdkeaqiHLLESDPEDIKWP-EYLQN 394

                        410       420       430       440       450       460
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15223612  267 SLF---------STQVY--VKSETDF---NSNIAFPWSQS-----QACDVFPKDLQRMAFSFG 310
Cdd:PLN03091 395 PFLmaatlqnqtPQPLYneIKPETHFiteGSSTMWPHNQQqqeplQNPDIYTKDLQRLTAAFG 457
PLN03212 PLN03212
Transcription repressor MYB5; Provisional
 2-129 6.51e-57

Transcription repressor MYB5; Provisional


Pssm-ID: 178751 [Multi-domain]  Cd Length: 249  Bit Score: 184.13  E-value: 6.51e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15223612    2 KRHSCCYKQKLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLERCGKSCRLRWINYLRPDLKRGAFSSEEQNLIVEL 81
Cdd:PLN03212  13 KTTPCCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRL 92

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 15223612   82 HAVLGNRWSQIAARLPGRTDNEIKNLWNSCIKKKLMKKGIDPITHKPL 129
Cdd:PLN03212  93 HRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGIDPQTHKPL 140
REB1 COG5147
Myb superfamily proteins, including transcription factors and mRNA splicing factors ...
 8-146 4.55e-15

Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning];


Pssm-ID: 227476 [Multi-domain]  Cd Length: 512  Bit Score: 75.59  E-value: 4.55e-15
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15223612   8 YKQKLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLeRCGKSCRLRWINYLRPDLKRGAFSSEEQNLIVELHAVLGN 87
Cdd:COG5147  14 MQTKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLIS-STGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGT 92

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*....
gi 15223612  88 RWSQIAARLPGRTDNEIKNLWNSCIKKKLMKKGIDPIThkpLSEVGKEtnrSDNNNSTS 146
Cdd:COG5147  93 QWSTIADYKDRRTAQQCVERYVNTLEDLSSTHDSKLQR---RNEFDKI---DPFNENSA 145
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 14-61 2.76e-13

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 63.29  E-value: 2.76e-13
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 15223612    14 KGLWSPEEDEKLLNYITKHGhGCWSSVPKLAGLeRCGKSCRLRWINYL 61
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLG-NRWKKIAKLLPG-RTDNQCKNRWQNYL 46
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 67-110 4.34e-13

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 62.52  E-value: 4.34e-13
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 15223612    67 RGAFSSEEQNLIVELHAVLGNRWSQIAARLPGRTDNEIKNLWNS 110
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLGNRWKKIAKLLPGRTDNQCKNRWQN 44
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 17-61 2.43e-11

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 57.59  E-value: 2.43e-11
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*
gi 15223612  17 WSPEEDEKLLNYITKHGHGCWSSVPKLAGLeRCGKSCRLRWINYL 61
Cdd:cd00167   2 WTEEEDELLLEAVKKYGKNNWEKIAKELPG-RTPKQCRERWRNLL 45
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
14-63 4.27e-11

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 57.23  E-value: 4.27e-11
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 15223612     14 KGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGlERCGKSCRLRWINYLRP 63
Cdd:smart00717   1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELP-GRTAEQCRERWRNLLKP 49
Myb_DNA-bind_6 pfam13921
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 17-74 1.82e-09

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 372817 [Multi-domain]  Cd Length: 60  Bit Score: 53.08  E-value: 1.82e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 15223612    17 WSPEEDEKLLNYITKHGHGcWSSVPKLAGlERCGKSCRLRWINYLRPDLKRGAFSSEE 74
Cdd:pfam13921   1 WTEEEDEKLLKLVEKYGND-WKQIAKELG-RRTPKQCFDRWRRKLNPKISRGPWSKEE 56
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
67-114 1.07e-08

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 50.30  E-value: 1.07e-08
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 15223612     67 RGAFSSEEQNLIVELHAVLG-NRWSQIAARLPGRTDNEIKNLWNSCIKK 114
Cdd:smart00717   1 KGEWTEEEDELLIELVKKYGkNNWEKIAKELPGRTAEQCRERWRNLLKP 49
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 69-109 2.83e-08

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 49.11  E-value: 2.83e-08
                        10        20        30        40
                ....*....|....*....|....*....|....*....|..
gi 15223612  69 AFSSEEQNLIVELHAVLG-NRWSQIAARLPGRTDNEIKNLWN 109
Cdd:cd00167   1 PWTEEEDELLLEAVKKYGkNNWEKIAKELPGRTPKQCRERWR 42
Myb_DNA-bind_6 pfam13921
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 70-120 3.45e-04

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 372817 [Multi-domain]  Cd Length: 60  Bit Score: 38.06  E-value: 3.45e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 15223612    70 FSSEEQNLIVELHAVLGNRWSQIAARLPGRTDNEIKNLWNSCIKKKlMKKG 120
Cdd:pfam13921   1 WTEEEDEKLLKLVEKYGNDWKQIAKELGRRTPKQCFDRWRRKLNPK-ISRG 50
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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