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Conserved domains on  [gi|15221949|ref|NP_175895|]
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proline-rich protein 1 [Arabidopsis thaliana]

Protein Classification

pollen Ole e 1 allergen/extensin family protein( domain architecture ID 10471875)

pollen Ole e 1 allergen/extensin family protein similar to Olea europaea major pollen allergen Ole e 1 that may be involved in recognition between pollen-stigma and\n pollen tube-style cells

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Pollen_Ole_e_1 pfam01190
Pollen protein Ole e 1 like;
214-296 1.58e-16

Pollen protein Ole e 1 like;


:

Pssm-ID: 460103 [Multi-domain]  Cd Length: 94  Bit Score: 73.93  E-value: 1.58e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221949   214 VGGIILCKNGY-------ETYPIQGAKAKIVCseRGSYEKSKNEVVIY-SDPTDFKGYFHV-----VLTHIKNLSNCRVK 280
Cdd:pfam01190   1 VEGLVYCDSCSrgsfslkGAKPLPGAKVRVTC--KNGKDGTKGEVTSYaSGTTDKNGYFKVelpgfDEKDDLKIKECKAK 78

                          90
                  ....*....|....*.
gi 15221949   281 LYTSPVETCKNPTNVN 296
Cdd:pfam01190  79 LVSSPDPTCNVPTNVN 94
PHA03247 super family cl33720
large tegument protein UL36; Provisional
 17-208 4.23e-07

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 51.86  E-value: 4.23e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221949    17 ATIATADYYAPSSPPVYTSPVNKPTLPPPVYTPPVhkPTLPPPVYTPPVHKPTLSPPVytKPTLP---------PPAYTP 87
Cdd:PHA03247 2791 LSESRESLPSPWDPADPPAAVLAPAAALPPAASPA--GPLPPPTSAQPTAPPPPPGPP--PPSLPlggsvapggDVRRRP 2866

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221949    88 PVYNKPTLPAPVYTPPVYK---PTLSPPVYTKPtLLPPVFKPTLSPPVYTKPTLSPTVYKPTLSPPVNNKPSLSPPVYKP 164
Cdd:PHA03247 2867 PSRSPAAKPAAPARPPVRRlarPAVSRSTESFA-LPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAP 2945

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 15221949   165 TLSPPVYTKPTlpPPVYKKSPSYSPPPPFAPKPTYTPPTKPYVP 208
Cdd:PHA03247 2946 TTDPAGAGEPS--GAVPQPWLGALVPGRVAVPRFRVPQPAPSRE 2987
 
Name Accession Description Interval E-value
Pollen_Ole_e_1 pfam01190
Pollen protein Ole e 1 like;
214-296 1.58e-16

Pollen protein Ole e 1 like;


Pssm-ID: 460103 [Multi-domain]  Cd Length: 94  Bit Score: 73.93  E-value: 1.58e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221949   214 VGGIILCKNGY-------ETYPIQGAKAKIVCseRGSYEKSKNEVVIY-SDPTDFKGYFHV-----VLTHIKNLSNCRVK 280
Cdd:pfam01190   1 VEGLVYCDSCSrgsfslkGAKPLPGAKVRVTC--KNGKDGTKGEVTSYaSGTTDKNGYFKVelpgfDEKDDLKIKECKAK 78

                          90
                  ....*....|....*.
gi 15221949   281 LYTSPVETCKNPTNVN 296
Cdd:pfam01190  79 LVSSPDPTCNVPTNVN 94
PHA03247 PHA03247
large tegument protein UL36; Provisional
 17-208 4.23e-07

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 51.86  E-value: 4.23e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221949    17 ATIATADYYAPSSPPVYTSPVNKPTLPPPVYTPPVhkPTLPPPVYTPPVHKPTLSPPVytKPTLP---------PPAYTP 87
Cdd:PHA03247 2791 LSESRESLPSPWDPADPPAAVLAPAAALPPAASPA--GPLPPPTSAQPTAPPPPPGPP--PPSLPlggsvapggDVRRRP 2866

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221949    88 PVYNKPTLPAPVYTPPVYK---PTLSPPVYTKPtLLPPVFKPTLSPPVYTKPTLSPTVYKPTLSPPVNNKPSLSPPVYKP 164
Cdd:PHA03247 2867 PSRSPAAKPAAPARPPVRRlarPAVSRSTESFA-LPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAP 2945

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 15221949   165 TLSPPVYTKPTlpPPVYKKSPSYSPPPPFAPKPTYTPPTKPYVP 208
Cdd:PHA03247 2946 TTDPAGAGEPS--GAVPQPWLGALVPGRVAVPRFRVPQPAPSRE 2987
Retinal pfam15449
Retinal protein; This family of proteins is found in the photoreceptor cells of the retina. ...
 29-179 4.70e-07

Retinal protein; This family of proteins is found in the photoreceptor cells of the retina. Mutations of the gene encoding this protein have been associated with retinal disorders such as retinitis pigmentosa and late-onset progressive retinal atrophy. The function of this family of proteins is unknown, but it is likely to be important in the development and function of the retina.


Pssm-ID: 464722 [Multi-domain]  Cd Length: 1293  Bit Score: 51.70  E-value: 4.70e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221949     29 SPPVYTSPVnKPTLPPpVYTPPvhKPTLPPPVYTPPVHKPTLSPPVYTKPTLPPPAY--TPPVYNKPTLPAPVYTPPVYK 106
Cdd:pfam15449 1035 SLPSSHRPA-QPSLPT-VQRSP--SPPLSPRAPSPPRSPRVLSPPTSKKRTSPPPQHklPSPPPESPPAQHKLSSPPTQR 1110

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221949    107 PTLSPPVyTKPTLLPPVfkptlSPPVYTKPTLSP---------------TVYKPTLSPPVNNKPSLSPPvyKPTLSPPVY 171
Cdd:pfam15449 1111 TEASSPS-SGPSPSPPT-----SPSQGHKETRDSedsqaatakasgntcSIFCPATSSLFEAKSPFSTA--HPLLPPEAG 1182


                   ....*...
gi 15221949    172 TKPTLPPP 179
Cdd:pfam15449 1183 GPLETPAG 1190
BimA_second NF040983
trimeric autotransporter actin-nucleating factor BimA; This HMM describes BimA (Burkholderia ...
 36-113 6.00e-05

trimeric autotransporter actin-nucleating factor BimA; This HMM describes BimA (Burkholderia intracellular motility A), WP_004266405.1-like proteins in Burkholderia mallei or B. pseudomallei. The term BimA has also been used for WP_011205626.1-like homologs that have a very different N-terminal half.


Pssm-ID: 468913 [Multi-domain]  Cd Length: 382  Bit Score: 44.51  E-value: 6.00e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15221949   36 PVNKPTLPPPVYTPPVHKPTLPPPvytPPVHKPTLSPPVYTKPTLPPPAYTPPVYNKPTLPAPVYTPPVYKPTLSPPV 113
Cdd:NF040983  92 PPPPPPPPPPPPPTPPPPPPPPPP---PPPPSPPPPPPPSPPPSPPPPTTTPPTRTTPSTTTPTPSMHPIQPTQLPSI 166
BimA_second NF040983
trimeric autotransporter actin-nucleating factor BimA; This HMM describes BimA (Burkholderia ...
 56-141 6.36e-04

trimeric autotransporter actin-nucleating factor BimA; This HMM describes BimA (Burkholderia intracellular motility A), WP_004266405.1-like proteins in Burkholderia mallei or B. pseudomallei. The term BimA has also been used for WP_011205626.1-like homologs that have a very different N-terminal half.


Pssm-ID: 468913 [Multi-domain]  Cd Length: 382  Bit Score: 41.04  E-value: 6.36e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221949   56 LPPPVYTPPVHKPTLSPPVYTKPTLPPPAYTPPVYNKPTLPAPVYTPPVYK-PTLSPPVYTKPTLLPPVFKPTLSPPVyt 134
Cdd:NF040983  89 VPPPPPPPPPPPPPPPTPPPPPPPPPPPPPPSPPPPPPPSPPPSPPPPTTTpPTRTTPSTTTPTPSMHPIQPTQLPSI-- 166


                 ....*..
gi 15221949  135 kPTLSPT 141
Cdd:NF040983 167 -PNATPT 172
 
Name Accession Description Interval E-value
Pollen_Ole_e_1 pfam01190
Pollen protein Ole e 1 like;
214-296 1.58e-16

Pollen protein Ole e 1 like;


Pssm-ID: 460103 [Multi-domain]  Cd Length: 94  Bit Score: 73.93  E-value: 1.58e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221949   214 VGGIILCKNGY-------ETYPIQGAKAKIVCseRGSYEKSKNEVVIY-SDPTDFKGYFHV-----VLTHIKNLSNCRVK 280
Cdd:pfam01190   1 VEGLVYCDSCSrgsfslkGAKPLPGAKVRVTC--KNGKDGTKGEVTSYaSGTTDKNGYFKVelpgfDEKDDLKIKECKAK 78

                          90
                  ....*....|....*.
gi 15221949   281 LYTSPVETCKNPTNVN 296
Cdd:pfam01190  79 LVSSPDPTCNVPTNVN 94
PHA03247 PHA03247
large tegument protein UL36; Provisional
 17-208 4.23e-07

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 51.86  E-value: 4.23e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221949    17 ATIATADYYAPSSPPVYTSPVNKPTLPPPVYTPPVhkPTLPPPVYTPPVHKPTLSPPVytKPTLP---------PPAYTP 87
Cdd:PHA03247 2791 LSESRESLPSPWDPADPPAAVLAPAAALPPAASPA--GPLPPPTSAQPTAPPPPPGPP--PPSLPlggsvapggDVRRRP 2866

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221949    88 PVYNKPTLPAPVYTPPVYK---PTLSPPVYTKPtLLPPVFKPTLSPPVYTKPTLSPTVYKPTLSPPVNNKPSLSPPVYKP 164
Cdd:PHA03247 2867 PSRSPAAKPAAPARPPVRRlarPAVSRSTESFA-LPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAP 2945

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 15221949   165 TLSPPVYTKPTlpPPVYKKSPSYSPPPPFAPKPTYTPPTKPYVP 208
Cdd:PHA03247 2946 TTDPAGAGEPS--GAVPQPWLGALVPGRVAVPRFRVPQPAPSRE 2987
Retinal pfam15449
Retinal protein; This family of proteins is found in the photoreceptor cells of the retina. ...
 29-179 4.70e-07

Retinal protein; This family of proteins is found in the photoreceptor cells of the retina. Mutations of the gene encoding this protein have been associated with retinal disorders such as retinitis pigmentosa and late-onset progressive retinal atrophy. The function of this family of proteins is unknown, but it is likely to be important in the development and function of the retina.


Pssm-ID: 464722 [Multi-domain]  Cd Length: 1293  Bit Score: 51.70  E-value: 4.70e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221949     29 SPPVYTSPVnKPTLPPpVYTPPvhKPTLPPPVYTPPVHKPTLSPPVYTKPTLPPPAY--TPPVYNKPTLPAPVYTPPVYK 106
Cdd:pfam15449 1035 SLPSSHRPA-QPSLPT-VQRSP--SPPLSPRAPSPPRSPRVLSPPTSKKRTSPPPQHklPSPPPESPPAQHKLSSPPTQR 1110

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221949    107 PTLSPPVyTKPTLLPPVfkptlSPPVYTKPTLSP---------------TVYKPTLSPPVNNKPSLSPPvyKPTLSPPVY 171
Cdd:pfam15449 1111 TEASSPS-SGPSPSPPT-----SPSQGHKETRDSedsqaatakasgntcSIFCPATSSLFEAKSPFSTA--HPLLPPEAG 1182


                   ....*...
gi 15221949    172 TKPTLPPP 179
Cdd:pfam15449 1183 GPLETPAG 1190
PHA03247 PHA03247
large tegument protein UL36; Provisional
 26-223 6.13e-07

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 51.48  E-value: 6.13e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221949    26 APSSPPVYTSPVNKPTLPPPVYTPPVHKPTLP-----PPVYTPPVHKPTLSPPVYTKPTLPPPAYTPPVYNKPTLPAPVY 100
Cdd:PHA03247 2762 TTAGPPAPAPPAAPAAGPPRRLTRPAVASLSEsreslPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPP 2841

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221949   101 TPPVYKPTLSP--------PVYTKPTLLPPVFKPTLSPPVYTKPTLSPTVYKPTLSPPVnnkpslsPPVYKPTLSPPVYT 172
Cdd:PHA03247 2842 PPGPPPPSLPLggsvapggDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFAL-------PPDQPERPPQPQAP 2914

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 15221949   173 KPTLPPPVYKKSPSYSPPPPFAPKPTYTPPTKPYVPEIIKAVGGIILCKNG 223
Cdd:PHA03247 2915 PPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLG 2965
PHA03247 PHA03247
large tegument protein UL36; Provisional
 17-208 8.33e-07

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 51.09  E-value: 8.33e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221949    17 ATIATADYYAPSSPPVYTSPvnkPTLPPPVYTPPVHKPTLPPPVYTPPVHKPTLSPPVYTKPTLPPPAYTPPVYNKPTLP 96
Cdd:PHA03247 2761 PTTAGPPAPAPPAAPAAGPP---RRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPT 2837

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221949    97 APVYTPPVYKPTLSP--------PVYTKPTLLPPVFKPTLSPPVYTKPTLSPTVYKPTLS---PPVNNKPSLSPPVYKPT 165
Cdd:PHA03247 2838 APPPPPGPPPPSLPLggsvapggDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESfalPPDQPERPPQPQAPPPP 2917

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 15221949   166 LSPPVYTKPTLPPPVYKKSPSYSPPPPFAPKPTYTPPTKPYVP 208
Cdd:PHA03247 2918 QPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVP 2960
PHA03247 PHA03247
large tegument protein UL36; Provisional
 26-208 1.51e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 49.94  E-value: 1.51e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221949    26 APSSPPVYTSPVNKPT---LPPPVYT--------PPVHKPTLPPPVYTPPVHKPTLSPPV-YTKPTLPPPAYTPPVYNKP 93
Cdd:PHA03247 2669 RLGRAAQASSPPQRPRrraARPTVGSltsladppPPPPTPEPAPHALVSATPLPPGPAAArQASPALPAAPAPPAVPAGP 2748

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221949    94 TLPAPVYTPPVYKPTLSPPVYTkptllPPVFKPTLSPPVYTKPTLSPTVYKPTLSPPVNNKPSLSPPVYKPTLSPPVYTK 173
Cdd:PHA03247 2749 ATPGGPARPARPPTTAGPPAPA-----PPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAAS 2823

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 15221949   174 PTLPPPVYKKSPSYSPPPPFAPKPTYTPPTKPYVP 208
Cdd:PHA03247 2824 PAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAP 2858
PHA03247 PHA03247
large tegument protein UL36; Provisional
 28-209 2.41e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 49.55  E-value: 2.41e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221949    28 SSPPVYTSPVNKPTLPPPVYTPPVHKPTLPPPVYTPPVHKPTLSPPvytkpTLPPPAYTPPVY-----NKPTLPAPVYTP 102
Cdd:PHA03247 2731 ASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPA-----AGPPRRLTRPAVaslseSRESLPSPWDPA 2805

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221949   103 PVYKPTLSPPVYTKPTLLPPVFKPTLSPPVYTKPTLSPTVYKPTLSP--------PVNNKPSLSPPVYKPTLS--PPV-- 170
Cdd:PHA03247 2806 DPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLggsvapggDVRRRPPSRSPAAKPAAParPPVrr 2885

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 15221949   171 YTKPTLPPPVYKKSPSYSPPPPFAPKPTYTPPTKPYVPE 209
Cdd:PHA03247 2886 LARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPP 2924
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 15-178 8.83e-06

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 47.39  E-value: 8.83e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221949    15 SLATIATADYYAPSSPPVYTSPVnkPTLPPPVYTPPVHKPTLPPPVYTPPVHKPtlSPPVYTkptlPPPAYTPPV----- 89
Cdd:PRK10263  324 AAATTATQSWAAPVEPVTQTPPV--ASVDVPPAQPTVAWQPVPGPQTGEPVIAP--APEGYP----QQSQYAQPAvqyne 395

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221949    90 -YNKPTLPAPVYTPPVYKPTLSPPVYTK--------PTLLPPVFKPTLSPPVYTKPTLSPTVYKPTLSP------PVNNK 154
Cdd:PRK10263  396 pLQQPVQPQQPYYAPAAEQPAQQPYYAPapeqpaqqPYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTeqtyqqPAAQE 475

                         170       180       190
                  ....*....|....*....|....*....|...
gi 15221949   155 PSLSPPvykPTLSPPVY---------TKPTLPP 178
Cdd:PRK10263  476 PLYQQP---QPVEQQPVvepepvveeTKPARPP 505
PHA03247 PHA03247
large tegument protein UL36; Provisional
 26-208 1.69e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 46.86  E-value: 1.69e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221949    26 APSSPPVYTSPVNKPTLPPPVYTPPVHKPTLPPPVYTPPVHKPTLSPPVYTKPTLPPPAYTPPVYNKPTLPAPVYTPPVY 105
Cdd:PHA03247 2552 PPPLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSP 2631

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221949   106 KPTLSPPVYTKPTLLPPVFKPTLSP-----------------PVYTKPTLSPTvyKPTLSPPVNNKPSLS--PPVYKPTL 166
Cdd:PHA03247 2632 SPAANEPDPHPPPTVPPPERPRDDPapgrvsrprrarrlgraAQASSPPQRPR--RRAARPTVGSLTSLAdpPPPPPTPE 2709

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 15221949   167 SPPVYTKPTLPPPVYKKSPSYSPPPPFAPKPTYTPPTKPYVP 208
Cdd:PHA03247 2710 PAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATP 2751
BimA_second NF040983
trimeric autotransporter actin-nucleating factor BimA; This HMM describes BimA (Burkholderia ...
 36-113 6.00e-05

trimeric autotransporter actin-nucleating factor BimA; This HMM describes BimA (Burkholderia intracellular motility A), WP_004266405.1-like proteins in Burkholderia mallei or B. pseudomallei. The term BimA has also been used for WP_011205626.1-like homologs that have a very different N-terminal half.


Pssm-ID: 468913 [Multi-domain]  Cd Length: 382  Bit Score: 44.51  E-value: 6.00e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15221949   36 PVNKPTLPPPVYTPPVHKPTLPPPvytPPVHKPTLSPPVYTKPTLPPPAYTPPVYNKPTLPAPVYTPPVYKPTLSPPV 113
Cdd:NF040983  92 PPPPPPPPPPPPPTPPPPPPPPPP---PPPPSPPPPPPPSPPPSPPPPTTTPPTRTTPSTTTPTPSMHPIQPTQLPSI 166
PHA03378 PHA03378
EBNA-3B; Provisional
 26-178 7.48e-05

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 44.67  E-value: 7.48e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221949   26 APSSPPVYTSPVNKPTLPPPVYTPPVHKPTLPPPVYTPPVHKpTLSPPVYTKPTLPPPAYTPPVYNKPTLPAPVYTPPVY 105
Cdd:PHA03378 641 ITFNVLVFPTPHQPPQVEITPYKPTWTQIGHIPYQPSPTGAN-TMLPIQWAPGTMQPPPRAPTPMRPPAAPPGRAQRPAA 719

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 15221949  106 KPTLSPPVYTKPTLL-PPVFKPTLSPPVYTKPT-LSPTVYKPTLSPPVNNKPSLSPPVYKPTLSPPVYTKPTLPP 178
Cdd:PHA03378 720 ATGRARPPAAAPGRArPPAAAPGRARPPAAAPGrARPPAAAPGRARPPAAAPGAPTPQPPPQAPPAPQQRPRGAP 794
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 17-112 1.66e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 43.26  E-value: 1.66e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221949   17 ATIATADYYAPSSPPVYTSPVNKPTlPPPVYTPPVHKPTLPPPVytPPVHKPTLSPPVYTKPTLPPPAYTPPVYNK-PTL 95
Cdd:PRK14950 358 ALLVPVPAPQPAKPTAAAPSPVRPT-PAPSTRPKAAAAANIPPK--EPVRETATPPPVPPRPVAPPVPHTPESAPKlTRA 434

                         90
                 ....*....|....*..
gi 15221949   96 PAPVYTPPVYKPTLSPP 112
Cdd:PRK14950 435 AIPVDEKPKYTPPAPPK 451
Retinal pfam15449
Retinal protein; This family of proteins is found in the photoreceptor cells of the retina. ...
 87-205 2.15e-04

Retinal protein; This family of proteins is found in the photoreceptor cells of the retina. Mutations of the gene encoding this protein have been associated with retinal disorders such as retinitis pigmentosa and late-onset progressive retinal atrophy. The function of this family of proteins is unknown, but it is likely to be important in the development and function of the retina.


Pssm-ID: 464722 [Multi-domain]  Cd Length: 1293  Bit Score: 43.22  E-value: 2.15e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221949     87 PPVYNKPTLPAPVYTPPVYKPTLSPPVYTKPTllppvfKPTLsPPVYTKPtlSPTVYKPTLSPPVNNKPsLSPPVYKPTL 166
Cdd:pfam15449 1012 PPLVRKASPTRAHWAPRADKRHPSLPSSHRPA------QPSL-PTVQRSP--SPPLSPRAPSPPRSPRV-LSPPTSKKRT 1081

                           90       100       110
                   ....*....|....*....|....*....|....*....
gi 15221949    167 SPPVYTKPTLPPPVYKKSPSYSPPPPFAPKPTYTPPTKP 205
Cdd:pfam15449 1082 SPPPQHKLPSPPPESPPAQHKLSSPPTQRTEASSPSSGP 1120
PRK15313 PRK15313
intestinal colonization autotransporter adhesin MisL;
25-113 2.71e-04

intestinal colonization autotransporter adhesin MisL;


Pssm-ID: 237940 [Multi-domain]  Cd Length: 955  Bit Score: 42.86  E-value: 2.71e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221949   25 YAPSSPPVYTSPVNkPTLPPPVYTPPVHkptlPPPVyTPPVHKPTLSPPVYTKPTLPPPayTPPVYNKPTLP--APVYTP 102
Cdd:PRK15313 557 YIEPDEPIIPDPVD-PVIPDPVIPDPVD----PDPV-DPVIPDPVIPDPVDPDPVDPEP--VDPVIPDPTIPdiGQSDTP 628

                         90
                 ....*....|.
gi 15221949  103 PVYKPTLSPPV 113
Cdd:PRK15313 629 PITEHQFRPEV 639
Retinal pfam15449
Retinal protein; This family of proteins is found in the photoreceptor cells of the retina. ...
 27-168 2.75e-04

Retinal protein; This family of proteins is found in the photoreceptor cells of the retina. Mutations of the gene encoding this protein have been associated with retinal disorders such as retinitis pigmentosa and late-onset progressive retinal atrophy. The function of this family of proteins is unknown, but it is likely to be important in the development and function of the retina.


Pssm-ID: 464722 [Multi-domain]  Cd Length: 1293  Bit Score: 42.84  E-value: 2.75e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221949     27 PSSPPVYTSPvnKPTLPPPVYTPPVH----------KPTLPPPVYTPPvHKPTLSPPVYTKPTlPPPAYTPPVYNKPTLP 96
Cdd:pfam15449 1045 PSLPTVQRSP--SPPLSPRAPSPPRSprvlspptskKRTSPPPQHKLP-SPPPESPPAQHKLS-SPPTQRTEASSPSSGP 1120

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221949     97 APvyTPPVykptlSPPVYTKPTLLP---------------PVFKPTLSPPVYTKPTLSPTvyKPTLSPPVNNKPSLSPPV 161
Cdd:pfam15449 1121 SP--SPPT-----SPSQGHKETRDSedsqaatakasgntcSIFCPATSSLFEAKSPFSTA--HPLLPPEAGGPLETPAGC 1191


                   ....*..
gi 15221949    162 YKPTLSP 168
Cdd:pfam15449 1192 WRSSSGP 1198
PHA03247 PHA03247
large tegument protein UL36; Provisional
 20-178 2.85e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 43.00  E-value: 2.85e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221949    20 ATADYYAPSSPPVYTSPVNKPTLPPPVYT-------PPVHKPTLPPPVYTPPVHKPTLSPPVYTKPTLPPPAYTPPVynK 92
Cdd:PHA03247 2697 SLADPPPPPPTPEPAPHALVSATPLPPGPaaarqasPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPA--A 2774

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221949    93 PTLPAPVYTPPVYKPTLSPPVYTKPTLLPPVFKPTLSPPvyTKPTLSPTVYKPTLSPPvnnkPSLSPPVYKPTLSPPVyt 172
Cdd:PHA03247 2775 PAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLA--PAAALPPAASPAGPLPP----PTSAQPTAPPPPPGPP-- 2846


                  ....*.
gi 15221949   173 KPTLPP 178
Cdd:PHA03247 2847 PPSLPL 2852
PRK14948 PRK14948
DNA polymerase III subunit gamma/tau;
27-103 2.97e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237862 [Multi-domain]  Cd Length: 620  Bit Score: 42.64  E-value: 2.97e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15221949   27 PSSPPVYTSPVNKPTLPPPVYTPPVHKPTLPPPVYTPPVHKPTLSPPVYTKPTLPPPAYTPPvynKPTLPAPVYTPP 103
Cdd:PRK14948 516 SASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPP---PPIPEEPTPSPT 589
PHA03247 PHA03247
large tegument protein UL36; Provisional
 26-203 3.14e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 42.62  E-value: 3.14e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221949    26 APSSPPVYTSPvnkPTLPPPVYTPPVHKPTLPPPVYTPPVHKPTLSPPV--------YTKPTLPPPAYTPPV-YNKPTLP 96
Cdd:PHA03247 2613 PPSPLPPDTHA---PDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPgrvsrprrARRLGRAAQASSPPQrPRRRAAR 2689

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221949    97 APVYT--------PPVYKPTLSPPVYTKPTLLPPVFKPT-----------LSPPVYTKPTLSPTVYKPTLSPPVNNKPSL 157
Cdd:PHA03247 2690 PTVGSltsladppPPPPTPEPAPHALVSATPLPPGPAAArqaspalpaapAPPAVPAGPATPGGPARPARPPTTAGPPAP 2769

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 15221949   158 SPPVYKPTLSPPVYTKPTLPPPVYKKSPSYSPPPPFAPKPTYTPPT 203
Cdd:PHA03247 2770 APPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPA 2815
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 13-107 3.53e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 42.10  E-value: 3.53e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221949   13 LLSLATIATADYYAPSSPPVYT---SPVNKPTLPPPVYTPPVH-KPTLPPPvytPPVHKPTLSPPVytkPTLPPPAYTPP 88
Cdd:PRK14950 359 LLVPVPAPQPAKPTAAAPSPVRptpAPSTRPKAAAAANIPPKEpVRETATP---PPVPPRPVAPPV---PHTPESAPKLT 432

                         90
                 ....*....|....*....
gi 15221949   89 VYNKPTLPAPVYTPPVYKP 107
Cdd:PRK14950 433 RAAIPVDEKPKYTPPAPPK 451
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
66-164 4.94e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 41.68  E-value: 4.94e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221949   66 HKPTLSPPVYTKPTL--PPPAYTPPVYNKP--------TLPAPVYTPPVYKPTLSPPVYTkptlLPPVFKPTLSPPVYTK 135
Cdd:PRK14971 369 ASGGRGPKQHIKPVFtqPAAAPQPSAAAAAspspsqssAAAQPSAPQSATQPAGTPPTVS----VDPPAAVPVNPPSTAP 444

                         90       100
                 ....*....|....*....|....*....
gi 15221949  136 PTLSPTVYKPTLSPPVNNKPSLSPPVYKP 164
Cdd:PRK14971 445 QAVRPAQFKEEKKIPVSKVSSLGPSTLRP 473
PHA03247 PHA03247
large tegument protein UL36; Provisional
 28-179 5.02e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 42.23  E-value: 5.02e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221949    28 SSPPVYTSPVNKPT--LPPPVYTPPVHKPTLPPPVYTPPVHKPTLSPPVYTKPTLPPPAYTPPVYNKPTLPAPV----YT 101
Cdd:PHA03247 2870 SPAAKPAAPARPPVrrLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLapttDP 2949

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221949   102 PPVYKPTLSPPVYTKPTLLP---PVFKPTLSPPVYTKPTLSPTVYKPTLSP-PVNNKPSLSPPVYKPTLSPPVYTKPTLP 177
Cdd:PHA03247 2950 AGAGEPSGAVPQPWLGALVPgrvAVPRFRVPQPAPSREAPASSTPPLTGHSlSRVSSWASSLALHEETDPPPVSLKQTLW 3029


                  ..
gi 15221949   178 PP 179
Cdd:PHA03247 3030 PP 3031
BimA_second NF040983
trimeric autotransporter actin-nucleating factor BimA; This HMM describes BimA (Burkholderia ...
 56-141 6.36e-04

trimeric autotransporter actin-nucleating factor BimA; This HMM describes BimA (Burkholderia intracellular motility A), WP_004266405.1-like proteins in Burkholderia mallei or B. pseudomallei. The term BimA has also been used for WP_011205626.1-like homologs that have a very different N-terminal half.


Pssm-ID: 468913 [Multi-domain]  Cd Length: 382  Bit Score: 41.04  E-value: 6.36e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221949   56 LPPPVYTPPVHKPTLSPPVYTKPTLPPPAYTPPVYNKPTLPAPVYTPPVYK-PTLSPPVYTKPTLLPPVFKPTLSPPVyt 134
Cdd:NF040983  89 VPPPPPPPPPPPPPPPTPPPPPPPPPPPPPPSPPPPPPPSPPPSPPPPTTTpPTRTTPSTTTPTPSMHPIQPTQLPSI-- 166


                 ....*..
gi 15221949  135 kPTLSPT 141
Cdd:NF040983 167 -PNATPT 172
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 45-178 6.75e-04

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 41.61  E-value: 6.75e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221949    45 PVYTPPV------HKPTLPPPVYTPPvHKPTLSPPVYTKPTLP-PPAYTPPVYNKPTLPAPVYTPPvYKPTLSPPVYTKP 117
Cdd:PRK10263  743 PLFTPIVepvqqpQQPVAPQQQYQQP-QQPVAPQPQYQQPQQPvAPQPQYQQPQQPVAPQPQYQQP-QQPVAPQPQYQQP 820

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15221949   118 TllppvfKPTLSPPVYTKPTLSPTVY-KPTLSPPVNNKPSLSPPVYKPTLSPPVYTKPTLPP 178
Cdd:PRK10263  821 Q------QPVAPQPQYQQPQQPVAPQpQDTLLHPLLMRNGDSRPLHKPTTPLPSLDLLTPPP 876
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
41-145 7.73e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 41.30  E-value: 7.73e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221949   41 TLPPPVYTPPVHKPTLPPPV-YTPPVHKPTLSPPVYTKPTLPPPAYTPPVYNKPTLPAPVYTPPVYKPTLSPPVYTKPTL 119
Cdd:PRK14971 368 DASGGRGPKQHIKPVFTQPAaAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPAAVPVNPPSTAPQAV 447

                         90       100
                 ....*....|....*....|....*.
gi 15221949  120 LPPVFKPTLSPPVYTKPTLSPTVYKP 145
Cdd:PRK14971 448 RPAQFKEEKKIPVSKVSSLGPSTLRP 473
Atrophin-1 pfam03154
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ...
 26-179 7.95e-04

Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.


Pssm-ID: 460830 [Multi-domain]  Cd Length: 991  Bit Score: 41.29  E-value: 7.95e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221949    26 APSSPPVYTSPVNKPTLPPPVYTPPVHKPTLPPPV----YTPPVHKPTLS---PPVYTKPTLPPPAYTPPVYNK------ 92
Cdd:pfam03154 194 AATAGPTPSAPSVPPQGSPATSQPPNQTQSTAAPHtliqQTPTLHPQRLPsphPPLQPMTQPPPPSQVSPQPLPqpslhg 273

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221949    93 --PTLPAPVYTPPvykPTLSPPVYTKPTLLPPVFKPTLSPPVYTKPTLSPTVYKPTLSPPVNNKPSLSPPVYKPTLSPPV 170
Cdd:pfam03154 274 qmPPMPHSLQTGP---SHMQHPVPPQPFPLTPQSSQSQVPPGPSPAAPGQSQQRIHTPPSQSQLQSQQPPREQPLPPAPL 350


                  ....*....
gi 15221949   171 YTKPTLPPP 179
Cdd:pfam03154 351 SMPHIKPPP 359
PRK14954 PRK14954
DNA polymerase III subunits gamma and tau; Provisional
 43-132 8.75e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184918 [Multi-domain]  Cd Length: 620  Bit Score: 41.08  E-value: 8.75e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221949   43 PPPVYTPPVHKPTLPPPVYTPPVHKPTLSPpvyTKPTLPPPAYTPPVynkpTLPAPVYTPPVykpTLSPPVYTKPTLLPP 122
Cdd:PRK14954 382 PSPAGSPDVKKKAPEPDLPQPDRHPGPAKP---EAPGARPAELPSPA----SAPTPEQQPPV---ARSAPLPPSPQASAP 451

                         90
                 ....*....|
gi 15221949  123 VFKPTLSPPV 132
Cdd:PRK14954 452 RNVASGKPGV 461
PHA03377 PHA03377
EBNA-3C; Provisional
 39-177 9.55e-04

EBNA-3C; Provisional


Pssm-ID: 177614 [Multi-domain]  Cd Length: 1000  Bit Score: 41.19  E-value: 9.55e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221949    39 KPTLPPPVYTPPVHKPTLPPPVYTPPVHKP-TLSPPVYTKPTLPPPAYTPPVYNKPTLPAPVYTPPVYKPTLSPPVYTKP 117
Cdd:PHA03377  548 KRATPPKVSPSDRGPPKASPPVMAPPSTGPrVMATPSTGPRDMAPPSTGPRQQAKCKDGPPASGPHEKQPPSSAPRDMAP 627

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15221949   118 T---------LLPPVFKPtlSPPVYTKPTLSPTVYKPTLSPPVNNKPSLSPPVYKPTLSPPVYTKPTLP 177
Cdd:PHA03377  628 SvvrmflrerLLEQSTGP--KPKSFWEMRAGRDGSGIQQEPSSRRQPATQSTPPRPSWLPSVFVLPSVD 694
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 24-178 9.99e-04

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 41.22  E-value: 9.99e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221949    24 YYAPSSPpvYTSPVNKPTLPPPVYTPPVHKPTLPPPVYTPPVHKPTLSPPVYTKPTLPPP--AYTPPVYNKPTLPAPVYT 101
Cdd:PRK10263  386 YAQPAVQ--YNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAgnAWQAEEQQSTFAPQSTYQ 463

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221949   102 P--PVYKPTLSPPVYTKPtllppvfkPTLSPPVY---------TKPTLSPTV-------------------YKPTLSP-- 149
Cdd:PRK10263  464 TeqTYQQPAAQEPLYQQP--------QPVEQQPVvepepvveeTKPARPPLYyfeeveekrarereqlaawYQPIPEPvk 535

                         170       180       190
                  ....*....|....*....|....*....|
gi 15221949   150 -PVNNKPSLSPPvyKPTLSPPVYTKPTLPP 178
Cdd:PRK10263  536 ePEPIKSSLKAP--SVAAVPPVEAAAAVSP 563
PHA03247 PHA03247
large tegument protein UL36; Provisional
 25-208 1.05e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 41.08  E-value: 1.05e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221949    25 YAPSSP-PVYTSPVNKPTLPP----------PVYTPPVHKPTLPPPVYTPPVHKPTLSP-PVYTKPTLPPPAYTPPVYNK 92
Cdd:PHA03247 2573 PAPRPSePAVTSRARRPDAPPqsarprapvdDRGDPRGPAPPSPLPPDTHAPDPPPPSPsPAANEPDPHPPPTVPPPERP 2652

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221949    93 PTLPAP--------VYTPPVYKPTLSPPVYTKPTLLPPVFKPTLSppvYTKPTLSPTVYKPTLSPPVNNKPSLSPPVYKP 164
Cdd:PHA03247 2653 RDDPAPgrvsrprrARRLGRAAQASSPPQRPRRRAARPTVGSLTS---LADPPPPPPTPEPAPHALVSATPLPPGPAAAR 2729

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 15221949   165 TLSPPVYTKPTLPPPVYKKSPSYSPPPPFAPKPTYTP--PTKPYVP 208
Cdd:PHA03247 2730 QASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPpaPAPPAAP 2775
KAR9 pfam08580
Yeast cortical protein KAR9; The KAR9 protein in Saccharomyces cerevisiae is a cytoskeletal ...
 27-177 1.25e-03

Yeast cortical protein KAR9; The KAR9 protein in Saccharomyces cerevisiae is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules. KAR9 localizes at the shmoo tip in mating cells and at the tip of the growing bud in anaphase.


Pssm-ID: 430088 [Multi-domain]  Cd Length: 684  Bit Score: 40.58  E-value: 1.25e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221949    27 PSSPPVYTSPVNKPTLPPPVytpPVHKPTLPPPVYTPPVHKPTLSPPVYTKPTlPPPAYTPPVYNKPTLPAPVYTPPVYK 106
Cdd:pfam08580 479 PQIASTLKQTKRPSKIPRAS---PNHSGFLSTPSNTATSETPTPALRPPSRPQ-PPPPGNRPRWNASTNTNDLDVGHNFK 554

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221949   107 PtlsppvytKPTLLPPVFKPTLSPPVYTKPTLSPTVYKPTLSPP-------------VNNKPSL--SPPVYKPTLSPPVY 171
Cdd:pfam08580 555 P--------LTLTTPSPTPSRSSRSSSTLPPVSPLSRDKSRSPAptcrsvsrasrrrASRKPTRigSPNSRTSLLDEPPY 626


                  ....*.
gi 15221949   172 TKPTLP 177
Cdd:pfam08580 627 PKLTLS 632
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 43-135 1.27e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 40.56  E-value: 1.27e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221949   43 PPPVYTPPVHKPTLPPPVY-TPPVHKPTLSPPVYTKPTLPPPAYTPPvynKPTLPAPVYTPPVykPTLSPPVYTKPTLLP 121
Cdd:PRK14950 362 PVPAPQPAKPTAAAPSPVRpTPAPSTRPKAAAAANIPPKEPVRETAT---PPPVPPRPVAPPV--PHTPESAPKLTRAAI 436

                         90
                 ....*....|....*
gi 15221949  122 PV-FKPTLSPPVYTK 135
Cdd:PRK14950 437 PVdEKPKYTPPAPPK 451
Retinal pfam15449
Retinal protein; This family of proteins is found in the photoreceptor cells of the retina. ...
 110-179 1.51e-03

Retinal protein; This family of proteins is found in the photoreceptor cells of the retina. Mutations of the gene encoding this protein have been associated with retinal disorders such as retinitis pigmentosa and late-onset progressive retinal atrophy. The function of this family of proteins is unknown, but it is likely to be important in the development and function of the retina.


Pssm-ID: 464722 [Multi-domain]  Cd Length: 1293  Bit Score: 40.53  E-value: 1.51e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15221949    110 SPPVYTK--PTLL---PPVFKPTLSPPVYTKPT--LSPTVYKPTlSPPVNNKPSlSPPVYKPTLSPPVYTKPTLPPP 179
Cdd:pfam15449 1011 SPPLVRKasPTRAhwaPRADKRHPSLPSSHRPAqpSLPTVQRSP-SPPLSPRAP-SPPRSPRVLSPPTSKKRTSPPP 1085
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 27-150 1.62e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 40.08  E-value: 1.62e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221949   27 PSSPPVYTSPVNKPTLPPPVYTPPVHKPTLPPPvyTPPVhkPTLSPPVYTKPTLPPPAYTPPvynkPTLPAPVYTPPVYK 106
Cdd:PRK14951 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAA--AAPA--PAAAPAAAASAPAAPPAAAPP----APVAAPAAAAPAAA 437

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 15221949  107 PTLSP-PVYTKPTLLPPVFKPTLSPPVYTKPTLSPTVYKPTLSPP 150
Cdd:PRK14951 438 PAAAPaAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAA 482
Atrophin-1 pfam03154
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ...
 28-179 1.71e-03

Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.


Pssm-ID: 460830 [Multi-domain]  Cd Length: 991  Bit Score: 40.14  E-value: 1.71e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221949    28 SSPPVYTSPVNKPTLPPPVYTPPVHKPTLPPPVYTPPVHK----PTLSPPVYTKPTLPP-------PAYTPPVYNKPTLP 96
Cdd:pfam03154 169 TQPPVLQAQSGAASPPSPPPPGTTQAATAGPTPSAPSVPPqgspATSQPPNQTQSTAAPhtliqqtPTLHPQRLPSPHPP 248

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221949    97 APVYTPPVYKPTLSPPVYTKPTLLPPVfkPTLSPPVYTKPTLSPTVYKPTLSP-PVNNKPSLSPPVYKPTLSPPVYTKPT 175
Cdd:pfam03154 249 LQPMTQPPPPSQVSPQPLPQPSLHGQM--PPMPHSLQTGPSHMQHPVPPQPFPlTPQSSQSQVPPGPSPAAPGQSQQRIH 326


                  ....
gi 15221949   176 LPPP 179
Cdd:pfam03154 327 TPPS 330
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 41-123 2.02e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 39.79  E-value: 2.02e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221949   41 TLPPPVYTPPVHKPTlPPPVYTPPVHKPTLSPPVYTKPTLPPPAYTPPvynKPTLPAPVYTPPVYKPT--LSPPVYTKPT 118
Cdd:PRK14950 368 PAKPTAAAPSPVRPT-PAPSTRPKAAAAANIPPKEPVRETATPPPVPP---RPVAPPVPHTPESAPKLtrAAIPVDEKPK 443


                 ....*
gi 15221949  119 LLPPV 123
Cdd:PRK14950 444 YTPPA 448
PHA03378 PHA03378
EBNA-3B; Provisional
 18-179 2.47e-03

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 39.67  E-value: 2.47e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221949   18 TIATADYYAPSSPPVYTSPVNKPTLPPPVYTPpvhkPTLPPPVYTPPVHKPTLSPPVYTKPTLPPPAYTPPVYNKPTLPA 97
Cdd:PHA03378 660 TPYKPTWTQIGHIPYQPSPTGANTMLPIQWAP----GTMQPPPRAPTPMRPPAAPPGRAQRPAAATGRARPPAAAPGRAR 735

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221949   98 PVYTPPVYKPtlsPPVYTKPTLLPPVFKPTLSPPVYTKPTLSPTVYKPTLSPPVNNKPSLSPPVYKPTLSPPVYTKPTLP 177
Cdd:PHA03378 736 PPAAAPGRAR---PPAAAPGRARPPAAAPGRARPPAAAPGAPTPQPPPQAPPAPQQRPRGAPTPQPPPQAGPTSMQLMPR 812


                 ..
gi 15221949  178 PP 179
Cdd:PHA03378 813 AA 814
TALPID3 pfam15324
Hedgehog signalling target; TALPID3 is a family of eukaryotic proteins that are targets for ...
 18-180 2.79e-03

Hedgehog signalling target; TALPID3 is a family of eukaryotic proteins that are targets for Hedgehog signalling. Mutations in this gene noticed first in chickens lead to multiple abnormalities of development.


Pssm-ID: 434634 [Multi-domain]  Cd Length: 1288  Bit Score: 39.49  E-value: 2.79e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221949     18 TIAT--ADYYAPSSPPVYTS-----PVNKPTLPPPVYTP-PVHKPTLPPPVYTP-PVHKPTLSPPVyTKPTLPPPAYTPP 88
Cdd:pfam15324  953 TIAImlGDREAQREPPVAASvpgdlPTKETLLPTPVPTPqPTPPCSPPSPLKEPsPVKTPDSSPCV-SEHDFFPVKEIPP 1031

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221949     89 VYNKPTLPA--PVYTPPVyKPTLSPPVYTKPTllPPVFKPTLSPPVYTKPTL--------------SPTVYKPTLSPPVN 152
Cdd:pfam15324 1032 EKGADTGPAvsLVITPTV-TPIATPPPAATPT--PPLSENSIDKLKSPSPELpkpwedsdlpleeeNPNSEQEELHPRAV 1108

                          170       180
                   ....*....|....*....|....*...
gi 15221949    153 nkpSLSPPVYKPTLSPPVYTKPTLPPPV 180
Cdd:pfam15324 1109 ---VMSVARDEEPESVVLPASPPEPKPL 1133
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 73-180 3.98e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 38.93  E-value: 3.98e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221949   73 PVYTKPTLPPPAYTPPVYNKPTLPAPVYTPPVYKPTLS---PPVYTKPTLLPPVFKPtlSPPVYTKPTLSPTVYKPTLSP 149
Cdd:PRK14951 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPaaaPAAAASAPAAPPAAAP--PAPVAAPAAAAPAAAPAAAPA 443

                         90       100       110
                 ....*....|....*....|....*....|.
gi 15221949  150 PVNNKPSLSPPVYKPTLSPPVYTKPTLPPPV 180
Cdd:PRK14951 444 AVALAPAPPAQAAPETVAIPVRVAPEPAVAS 474
PRK14948 PRK14948
DNA polymerase III subunit gamma/tau;
37-113 4.16e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237862 [Multi-domain]  Cd Length: 620  Bit Score: 38.79  E-value: 4.16e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15221949   37 VNKPTLPPPVYTPPVHKPTLPPPVYTPPVHKPTLSPPVYTKPTLPPPAYTPPVYNKPTLPAPVYTPPvykPTLSPPV 113
Cdd:PRK14948 512 SQSGSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPPP---PIPEEPT 585
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 69-164 4.38e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 38.64  E-value: 4.38e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221949   69 TLSPPVYTKPTLPPPAYTPPVynKPTlPAPVYTPPVYKPTLSPPVYTKPTLLPP---VFKPTLSPPVYTKPTLSPTvykP 145
Cdd:PRK14950 359 LLVPVPAPQPAKPTAAAPSPV--RPT-PAPSTRPKAAAAANIPPKEPVRETATPppvPPRPVAPPVPHTPESAPKL---T 432

                         90
                 ....*....|....*....
gi 15221949  146 TLSPPVNNKPSLSPPVYKP 164
Cdd:PRK14950 433 RAAIPVDEKPKYTPPAPPK 451
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 28-180 7.22e-03

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 38.36  E-value: 7.22e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221949    28 SSPPVYTSPVNKPTLPPPVYTPPVHKPTLPPPVYTPPVHKPTLSPPVYTKP----TLPPPAYTPPVYNKpTLPAPVYTPP 103
Cdd:pfam05109 501 SKAPDMTSPTSAVTTPTPNATSPTPAVTTPTPNATSPTLGKTSPTSAVTTPtpnaTSPTPAVTTPTPNA-TIPTLGKTSP 579

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221949   104 VYKPTLSPPVYTKPTL---------LPPVFKPTLSPPVYTKP----TLSPTVYKPTLSPPVNNKPSLSPPVYKPTLSPPV 170
Cdd:pfam05109 580 TSAVTTPTPNATSPTVgetspqantTNHTLGGTSSTPVVTSPpknaTSAVTTGQHNITSSSTSSMSLRPSSISETLSPST 659

                         170
                  ....*....|
gi 15221949   171 YTKPTLPPPV 180
Cdd:pfam05109 660 SDNSTSHMPL 669
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 86-180 7.34e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 38.25  E-value: 7.34e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221949   86 TPPVYNKPTLPApvytPPVYKPTLSPPvyTKPTLLPPVFKPTlSPPVYTKPTLSPTVYKPTLSPPVNNKPSLSPpvyKPT 165
Cdd:PRK14950 364 PAPQPAKPTAAA----PSPVRPTPAPS--TRPKAAAAANIPP-KEPVRETATPPPVPPRPVAPPVPHTPESAPK---LTR 433

                         90
                 ....*....|....*
gi 15221949  166 LSPPVYTKPTLPPPV 180
Cdd:PRK14950 434 AAIPVDEKPKYTPPA 448
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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