NCBI Conserved Domain Search

Leucine-rich repeat (LRR) protein [Transcription];

146-331

2.80e-24

Leucine-rich repeat (LRR) protein [Transcription];

Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 106.56 E-value: 2.80e-24

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149 146 IIPKSLSKLALMYEFDVSNNRFVGQFPevslswpSLKFLDLRYNEFEgSLPSEIFD-KDLDAIFLNNNRFESvIPGTIGK 224
Cdd:COG4886  87 LGLTDLGDLTNLTELDLSGNEELSNLT-------NLESLDLSGNQLT-DLPEELANlTNLKELDLSNNQLTD-LPEPLGN 157

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149 225 SKA-SVVTFANNKFSGcIPKSIGNMKNLNEIVFTGNNLTGcFPNEIGLLNNVTVFDASKNGfVGSLPSTLSGLASVEQLD 303
Cdd:COG4886 158 LTNlKSLDLSNNQLTD-LPEELGNLTNLKELDLSNNQITD-LPEPLGNLTNLEELDLSGNQ-LTDLPEPLANLTNLETLD 234

                       170       180
                ....*....|....*....|....*...
gi 15222149 304 LSHNKLTGFvvDKFCKLPNLDSFKFSYN 331
Cdd:COG4886 235 LSNNQLTDL--PELGNLTNLEELDLSNN 260

PHA03247

large tegument protein UL36; Provisional

401-793

1.66e-10

large tegument protein UL36; Provisional

Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 65.34 E-value: 1.66e-10

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149   401 TSEPKPSKPEPVMP----KPSDSSKPETPKTPEQPSPKPQPPKHESPKPEEPenkHELPKQKESPKPQPSK---PEDSPK 473
Cdd:PHA03247 2570 PPRPAPRPSEPAVTsrarRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDT---HAPDPPPPSPSPAANEpdpHPPPTV 2646

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149   474 PEQPKPEESPKPEQPQIP-------EPTKPVSPPneaQGPTPDDPYDA-SPVKNRRSPPPPkvedtrvpppqppmpspsp 545
Cdd:PHA03247 2647 PPPERPRDDPAPGRVSRPrrarrlgRAAQASSPP---QRPRRRAARPTvGSLTSLADPPPP------------------- 2704

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149   546 pspiysPPPPVHSPPPPVYSSPPPPHVYSPPPPVASPPPPSPPPPVHSPPPPPVFSPPPPVFSPPPPSPVYSPPPPSHSP 625
Cdd:PHA03247 2705 ------PPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAG 2778

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149   626 PPPVYSPPPPTFSPPPTHNTNQPPMGAPTPTQAPTPSSETTQVPTPSsesdqsqilSPVQAPTPVQSSTPSSEPTQVPTP 705
Cdd:PHA03247 2779 PPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPA---------GPLPPPTSAQPTAPPPPPGPPPPS 2849

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149   706 SSSESYQAPNlSPVQAPTPVQAPTTSSETSQVPTPSSESNQSPSQAPTPILEPVHAPTPNSKPvQSPTPSSEPVSSPEQS 785
Cdd:PHA03247 2850 LPLGGSVAPG-GDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQP-QAPPPPQPQPQPPPPP 2927


                  ....*...
gi 15222149   786 EEVEAPEP 793
Cdd:PHA03247 2928 QPQPPPPP 2935

PspC_subgroup_2

pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ...

403-532

8.75e-08

pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A.

Pssm-ID: 468202 [Multi-domain] Cd Length: 557 Bit Score: 55.93 E-value: 8.75e-08

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  403 EPKPSKPEPVMPKPSDSSKPETPKTPEQPSPkpqppkhESPKPEEPEnKHELPKQKESPKPQPSKPEDSPKPEQPKPEES 482
Cdd:NF033839 306 EKKEVKPEPETPKPEVKPQLEKPKPEVKPQP-------EKPKPEVKP-QLETPKPEVKPQPEKPKPEVKPQPEKPKPEVK 377

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 15222149  483 PKPEQPQIPEPTKPVSPPNEAQgPTPDDPydASPVKNRRSPPPPKVEDTR 532
Cdd:NF033839 378 PQPETPKPEVKPQPEKPKPEVK-PQPEKP--KPEVKPQPEKPKPEVKPQP 424

PspC_subgroup_1

NF033838

pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ...

400-518

8.56e-06

pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site.

Pssm-ID: 468201 [Multi-domain] Cd Length: 684 Bit Score: 49.63 E-value: 8.56e-06

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  400 RTSEPKPSKPEPVMPKPSDSSKPETPKTPEQPSPkpqppkhESPKPEEPENKHELPKQKESPKPQPSKPEDSPKPEQPKP 479
Cdd:NF033838 366 RNEEKIKQAKAKVESKKAEATRLEKIKTDRKKAE-------EEAKRKAAEEDKVKEKPAEQPQPAPAPQPEKPAPKPEKP 438

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 15222149  480 EESPKPEQPQIPEPTKPVSPPNE--------AQGPTPDDPYDASPVK 518
Cdd:NF033838 439 AEQPKAEKPADQQAEEDYARRSEeeynrltqQQPPKTEKPAQPSTPK 485

PspC_subgroup_2

pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ...

404-496

2.13e-05

Pssm-ID: 468202 [Multi-domain] Cd Length: 557 Bit Score: 48.23 E-value: 2.13e-05

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  404 PKPS-KPEPVMPKPSDSSKPETPKtpEQPSPKPqppkhESPKPeEPENKHELPKQKESPKPQPSKPEDSPKPEQPKPEES 482
Cdd:NF033839 405 PKPEvKPQPEKPKPEVKPQPEKPK--PEVKPQP-----EKPKP-EVKPQPEKPKPEVKPQPETPKPEVKPQPEKPKPEVK 476

                         90
                 ....*....|....
gi 15222149  483 PKPEQPQiPEPTKP 496
Cdd:NF033839 477 PQPEKPK-PDNSKP 489

PARM

pfam17061

PARM; Human PARM-1 is a mucin-like, androgen-regulated transmembrane protein that is present ...

652-758

2.57e-05

PARM; Human PARM-1 is a mucin-like, androgen-regulated transmembrane protein that is present in most tissues, with high levels in the heart, kidney and placenta. It has been shown to be induced and expressed in prostate after castration and may have a role in cell proliferation and immortalization in prostate cancer.

Pssm-ID: 465341 [Multi-domain] Cd Length: 296 Bit Score: 47.16 E-value: 2.57e-05

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149   652 APTPTQAPTPSSETTQVPTPSSESDQSQILSPVQAPTPVQSSTPSSEPTQVPTP-SSSESYQAPNLSPVQAPTPVQAPTT 730
Cdd:pfam17061 105 TPTPEEHSSGTPETSVPATGSQSPAESPTLTSPQAPASSPSSPSTSPPEVSSASvTTNHSSTETSTQPTGAPTTPESPTE 184

                          90       100
                  ....*....|....*....|....*...
gi 15222149   731 SSETSQVPTPSSESNQSPSQAPTPILEP 758
Cdd:pfam17061 185 EHSSGHTPTSHATSEPVPTETTPQTTVP 212

Not5

COG5665

CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription];

653-794

8.01e-05

CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription];

Pssm-ID: 444384 [Multi-domain] Cd Length: 874 Bit Score: 46.58 E-value: 8.01e-05

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149 653 PTPTQAPTPSSETTQVPTPSSESDQSQILSPVQAPTPVQSSTPSSEPT-QVPTPSSSESYQAPNLSPvQAPTPVQA--PT 729
Cdd:COG5665 260 PKSQPTSPSGGTTPPSTNQLTTSNTPTSTAKAQPQPPTKKQPAKEPPSdTASGNPSAPSVLINSDSP-TSEDPATAsvPT 338

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15222149 730 TSsETSQVPTPSSESnQSPSQAPTPILEPV--HAPTPNSKPVQSP-TPSSEPVSSPEQSEEVEAPEPT 794
Cdd:COG5665 339 TE-ETTAFTTPSSVP-STPAEKDTPATDLAtpVSPTPPETSVDKKvSPDSATSSTKSEKEGGTASSPM 404

PspC_subgroup_2

pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ...

411-511

8.54e-05

Pssm-ID: 468202 [Multi-domain] Cd Length: 557 Bit Score: 46.30 E-value: 8.54e-05

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  411 PVMPKPSDSSKPETPKTPEQPspkpqppkheSPKPEEPENKhelpkqkesPKPQPSKPEDSPKPEQPKPEESPKPEQPQI 490
Cdd:NF033839 281 QDTPKEPGNKKPSAPKPGMQP----------SPQPEKKEVK---------PEPETPKPEVKPQLEKPKPEVKPQPEKPKP 341

                         90       100
                 ....*....|....*....|.
gi 15222149  491 PEPTKPVSPPNEAQgPTPDDP 511
Cdd:NF033839 342 EVKPQLETPKPEVK-PQPEKP 361

LRR_8

pfam13855

Leucine rich repeat;

250-309

2.05e-04

Leucine rich repeat;

Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 39.82 E-value: 2.05e-04

                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15222149   250 NLNEIVFTGNNLT----GCFPNeiglLNNVTVFDASKNGFVGSLPSTLSGLASVEQLDLSHNKL 309
Cdd:pfam13855   2 NLRSLDLSNNRLTslddGAFKG----LSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61

PPP1R42

cd21340

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...

270-331

2.46e-03

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.

Pssm-ID: 411060 [Multi-domain] Cd Length: 220 Bit Score: 40.15 E-value: 2.46e-03

                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15222149 270 GLLNNVTVFDASKNGfVGSLpSTLSGLASVEQLDLSHNKLTGF--VVDKFCKLPNLDSFKFSYN 331
Cdd:cd21340 117 ALSNSLRVLNISGNN-IDSL-EPLAPLRNLEQLDASNNQISDLeeLLDLLSSWPSLRELDLTGN 178

SAV_2336_NTERM

NF041121

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...

441-526

3.93e-03

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.

Pssm-ID: 469044 [Multi-domain] Cd Length: 473 Bit Score: 40.76 E-value: 3.93e-03

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  441 ESPKPEEPENKH-ELPKQKESPKPQPSKPEDSPKPEQPKPEESPKPEQPQIPeptkPVSPPneAQGPTPDDPYDASPVKN 519
Cdd:NF041121  20 APPSPEGPAPTAaSQPATPPPPAAPPSPPGDPPEPPAPEPAPLPAPYPGSLA----PPPPP--PPGPAGAAPGAALPVRV 93


                 ....*..
gi 15222149  520 RRSPPPP 526
Cdd:NF041121  94 PAPPALP 100

rad23

TIGR00601

UV excision repair protein Rad23; All proteins in this family for which functions are known ...

675-752

8.10e-03

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]

Pssm-ID: 273167 [Multi-domain] Cd Length: 378 Bit Score: 39.49 E-value: 8.10e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149   675 SDQSQILSPVQAPTPVQSST--PSSEPTQVPTPSSSESyQAPNLSPVQAPTPVQAP-TTSSETSQVPTPSSESNQSPSQA 751
Cdd:TIGR00601  65 KEKDFVVVMVSKPKTGTGKVapPAATPTSAPTPTPSPP-ASPASGMSAAPASAVEEkSPSEESATATAPESPSTSVPSSG 143


                  .
gi 15222149   752 P 752
Cdd:TIGR00601 144 S 144

SepH

NF040712

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ...

400-530

9.27e-03

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.

Pssm-ID: 468676 [Multi-domain] Cd Length: 346 Bit Score: 39.37 E-value: 9.27e-03

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  400 RTSEPKPSKPEPVMPK--PSDSSKPETPKTPEQPSPKPQPPKHESPKPEEP-----ENKHELPKQKESPKPQPSKPEDSP 472
Cdd:NF040712 210 ADARPEEVEPAPAAEGapATDSDPAEAGTPDDLASARRRRAGVEQPEDEPVgpgaaPAAEPDEATRDAGEPPAPGAAETP 289

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 15222149  473 KPEQPKPEESPKPEQPQIPEPTKPVSPpnEAQGPTPddpydasPVKNRRSPPPPKVED 530
Cdd:NF040712 290 EAAEPPAPAPAAPAAPAAPEAEEPARP--EPPPAPK-------PKRRRRRASVPSWDD 338

Name

Accession

Description

Interval

E-value

PLN00113

leucine-rich repeat receptor-like protein kinase; Provisional

71-336

3.94e-32

leucine-rich repeat receptor-like protein kinase; Provisional

Pssm-ID: 215061 [Multi-domain] Cd Length: 968 Bit Score: 134.59 E-value: 3.94e-32

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149   71 KAIYSDPFKTTANWVGS-DVCSYNGVYCapalddDSLTVVAGVDLNHADIAGHLPPELGLMTDLALFHINSNRFCGIIPK 149
Cdd:PLN00113  38 KSSINDPLKYLSNWNSSaDVCLWQGITC------NNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPD 111

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  150 SLSKL--ALMYeFDVSNNRFVGQFPEVSLswPSLKFLDLRYNEFEGSLPSEI-FDKDLDAIFLNNNRFESVIPGTIGK-S 225
Cdd:PLN00113 112 DIFTTssSLRY-LNLSNNNFTGSIPRGSI--PNLETLDLSNNMLSGEIPNDIgSFSSLKVLDLGGNVLVGKIPNSLTNlT 188

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  226 KASVVTFANNKFSGCIPKSIGNMKNLNEIVFTGNNLTGCFPNEIGLLNNVTVFDASKNGFVGSLPSTLSGLASVEQLDLS 305
Cdd:PLN00113 189 SLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLY 268

                        250       260       270
                 ....*....|....*....|....*....|.
gi 15222149  306 HNKLTGFVVDKFCKLPNLDSFKFSYNFFNGE 336
Cdd:PLN00113 269 QNKLSGPIPPSIFSLQKLISLDLSDNSLSGE 299

PLN00113

leucine-rich repeat receptor-like protein kinase; Provisional

106-336

7.12e-25

leucine-rich repeat receptor-like protein kinase; Provisional

Pssm-ID: 215061 [Multi-domain] Cd Length: 968 Bit Score: 111.48 E-value: 7.12e-25

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  106 LTVVAGVDLNHADIAGHLPPELGLMTDLALFHINSNRFCGIIPKSLSKLALMYEFDVSNNRFVGQFPEVSLSWPSLKFLD 185
Cdd:PLN00113 235 LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILH 314

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  186 LRYNEFEGSLPSEIFD-KDLDAIFLNNNRFESVIPGTIGK-SKASVVTFANNKFSGCIPKSIGNMKNLNEIVFTGNNLTG 263
Cdd:PLN00113 315 LFSNNFTGKIPVALTSlPRLQVLQLWSNKFSGEIPKNLGKhNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEG 394

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15222149  264 CFPNEIGLLNNVTVFDASKNGFVGSLPSTLSGLASVEQLDLSHNKLTGFVVDKFCKLPNLDSFKFSYNFFNGE 336
Cdd:PLN00113 395 EIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGG 467

PLN00113

leucine-rich repeat receptor-like protein kinase; Provisional

104-335

1.16e-24

leucine-rich repeat receptor-like protein kinase; Provisional

Pssm-ID: 215061 [Multi-domain] Cd Length: 968 Bit Score: 110.71 E-value: 1.16e-24

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  104 DSLTVVagvDLNHADIAGHLPPEL---GLMTDLALFhinSNRFCGIIPKSLSKLALMYEFDVSNNRFVGQFPEVSLSWPS 180
Cdd:PLN00113 356 NNLTVL---DLSTNNLTGEIPEGLcssGNLFKLILF---SNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPL 429

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  181 LKFLDLRYNEFEGSLPSEIFD-KDLDAIFLNNNRFESVIPGTIGKSKASVVTFANNKFSGCIPKSIGNMKNLNEIVFTGN 259
Cdd:PLN00113 430 VYFLDISNNNLQGRINSRKWDmPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSEN 509

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15222149  260 NLTGCFPNEIGLLNNVTVFDASKNGFVGSLPSTLSGLASVEQLDLSHNKLTGFVVDKFCKLPNLDSFKFSYNFFNG 335
Cdd:PLN00113 510 KLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG 585

LRR

Leucine-rich repeat (LRR) protein [Transcription];

146-331

2.80e-24

Leucine-rich repeat (LRR) protein [Transcription];

Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 106.56 E-value: 2.80e-24

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149 146 IIPKSLSKLALMYEFDVSNNRFVGQFPevslswpSLKFLDLRYNEFEgSLPSEIFD-KDLDAIFLNNNRFESvIPGTIGK 224
Cdd:COG4886  87 LGLTDLGDLTNLTELDLSGNEELSNLT-------NLESLDLSGNQLT-DLPEELANlTNLKELDLSNNQLTD-LPEPLGN 157

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149 225 SKA-SVVTFANNKFSGcIPKSIGNMKNLNEIVFTGNNLTGcFPNEIGLLNNVTVFDASKNGfVGSLPSTLSGLASVEQLD 303
Cdd:COG4886 158 LTNlKSLDLSNNQLTD-LPEELGNLTNLKELDLSNNQITD-LPEPLGNLTNLEELDLSGNQ-LTDLPEPLANLTNLETLD 234

                       170       180
                ....*....|....*....|....*...
gi 15222149 304 LSHNKLTGFvvDKFCKLPNLDSFKFSYN 331
Cdd:COG4886 235 LSNNQLTDL--PELGNLTNLEELDLSNN 260

LRR

Leucine-rich repeat (LRR) protein [Transcription];

103-331

2.94e-23

Leucine-rich repeat (LRR) protein [Transcription];

Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 103.47 E-value: 2.94e-23

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149 103 DDSLTVVAGVDLNHADIAGHLPPELGLMTDLALFHINSNrfcgiipKSLSKLALMYEFDVSNNRfVGQFPEVSLSWPSLK 182
Cdd:COG4886  68 LLSLLLLLLLSLLLLSLLLLGLTDLGDLTNLTELDLSGN-------EELSNLTNLESLDLSGNQ-LTDLPEELANLTNLK 139

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149 183 FLDLRYNEFEgSLPSEIFD-KDLDAIFLNNNRFESvIPGTIGKSKA-SVVTFANNKFSGcIPKSIGNMKNLNEIVFTGNN 260
Cdd:COG4886 140 ELDLSNNQLT-DLPEPLGNlTNLKSLDLSNNQLTD-LPEELGNLTNlKELDLSNNQITD-LPEPLGNLTNLEELDLSGNQ 216

                       170       180       190       200       210       220       230
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 15222149 261 LTGcFPNEIGLLNNVTVFDASKNGFVgSLPStLSGLASVEQLDLSHNKLTGFvvDKFCKLPNLDSFKFSYN 331
Cdd:COG4886 217 LTD-LPEPLANLTNLETLDLSNNQLT-DLPE-LGNLTNLEELDLSNNQLTDL--PPLANLTNLKTLDLSNN 282

PLN00113

leucine-rich repeat receptor-like protein kinase; Provisional

112-339

2.37e-21

leucine-rich repeat receptor-like protein kinase; Provisional

Pssm-ID: 215061 [Multi-domain] Cd Length: 968 Bit Score: 99.92 E-value: 2.37e-21

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  112 VDLNHADIAGHLPPELGLMTDLALFHINSNRFCGIIPKSLSKLALMYEFDVSNNRFVGQFPEVSLSWPSLKFLDLRYNEF 191
Cdd:PLN00113 169 LDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNL 248

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  192 EGSLPSEIFD-KDLDAIFLNNNRFESVIPGTI-GKSKASVVTFANNKFSGCIPKSIGNMKNLnEIV------FTG----- 258
Cdd:PLN00113 249 TGPIPSSLGNlKNLQYLFLYQNKLSGPIPPSIfSLQKLISLDLSDNSLSGEIPELVIQLQNL-EILhlfsnnFTGkipva 327

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  259 --------------NNLTGCFPNEIGLLNNVTVFDASKNGFVGSLPSTLSGLASVEQLDLSHNKLTGFVVDKFCKLPNLD 324
Cdd:PLN00113 328 ltslprlqvlqlwsNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLR 407

                        250
                 ....*....|....*
gi 15222149  325 SFKFSYNFFNGEAES 339
Cdd:PLN00113 408 RVRLQDNSFSGELPS 422

PLN00113

leucine-rich repeat receptor-like protein kinase; Provisional

105-336

6.54e-21

leucine-rich repeat receptor-like protein kinase; Provisional

Pssm-ID: 215061 [Multi-domain] Cd Length: 968 Bit Score: 98.77 E-value: 6.54e-21

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  105 SLTVVAGVDLNHADIAGHLPPELGLMTDLALFHINSNRFCGIIPKSLSKLALMYEFDVSNNRFVGQFPEVSLSWPSLKFL 184
Cdd:PLN00113 282 SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVL 361

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  185 DLRYNEFEGSLPSEIFDK-DLDAIFLNNNRFESVIPGTIGKSKA-SVVTFANNKFSGCIPKSIGNMKNLNEIVFTGNNLT 262
Cdd:PLN00113 362 DLSTNNLTGEIPEGLCSSgNLFKLILFSNSLEGEIPKSLGACRSlRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQ 441

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15222149  263 GCFPNEIGLLNNVTVFDASKNGFVGSLPStLSGLASVEQLDLSHNKLTGFVVDKFCKLPNLDSFKFSYNFFNGE 336
Cdd:PLN00113 442 GRINSRKWDMPSLQMLSLARNKFFGGLPD-SFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGE 514

LRR

Leucine-rich repeat (LRR) protein [Transcription];

124-338

9.84e-20

Leucine-rich repeat (LRR) protein [Transcription];

Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 92.69 E-value: 9.84e-20

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149 124 PPELGLMTDLALFHINSNRFCGIiPKSLSKLALMYEFDVSNNRFvGQFPEVSLSWPSLKFLDLRYNEFEgSLPSEIFD-K 202
Cdd:COG4886 106 NEELSNLTNLESLDLSGNQLTDL-PEELANLTNLKELDLSNNQL-TDLPEPLGNLTNLKSLDLSNNQLT-DLPEELGNlT 182

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149 203 DLDAIFLNNNRFESvIPGTIGKSKA-SVVTFANNKFSGcIPKSIGNMKNLNEIVFTGNNLTGcFPnEIGLLNNVTVFDAS 281
Cdd:COG4886 183 NLKELDLSNNQITD-LPEPLGNLTNlEELDLSGNQLTD-LPEPLANLTNLETLDLSNNQLTD-LP-ELGNLTNLEELDLS 258

                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|....*..
gi 15222149 282 KNGfVGSLPStLSGLASVEQLDLSHNKLTGFVVDKFCKLPNLDSFKFSYNFFNGEAE 338
Cdd:COG4886 259 NNQ-LTDLPP-LANLTNLKTLDLSNNQLTDLKLKELELLLGLNSLLLLLLLLNLLEL 313

PLN00113

leucine-rich repeat receptor-like protein kinase; Provisional

121-297

2.95e-19

leucine-rich repeat receptor-like protein kinase; Provisional

Pssm-ID: 215061 [Multi-domain] Cd Length: 968 Bit Score: 93.37 E-value: 2.95e-19

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  121 GHLPPELGLMTDLALFHINSNRFCGIIPKSLSKLALMYEFDVSNNRFVGQFPEVSLSWPSLKFLDLRYNEFEGSLPSEIF 200
Cdd:PLN00113 394 GEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG 473

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  201 DKDLDAIFLNNNRFESVIPGTIGK-------------------------SKASVVTFANNKFSGCIPKSIGNMKNLNEIV 255
Cdd:PLN00113 474 SKRLENLDLSRNQFSGAVPRKLGSlselmqlklsenklsgeipdelsscKKLVSLDLSHNQLSGQIPASFSEMPVLSQLD 553

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 15222149  256 FTGNNLTGCFPNEIGLLNNVTVFDASKNGFVGSLPSTLSGLA 297
Cdd:PLN00113 554 LSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLA 595

LRR

Leucine-rich repeat (LRR) protein [Transcription];

123-336

7.74e-14

Leucine-rich repeat (LRR) protein [Transcription];

Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 74.58 E-value: 7.74e-14

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149 123 LPPELGLMTDLALFHINSNRFCGIiPKSLSKLALMYEFDVSNNRfVGQFPEvSLS-WPSLKFLDLRYNEFEgSLPSEIFD 201
Cdd:COG4886 151 LPEPLGNLTNLKSLDLSNNQLTDL-PEELGNLTNLKELDLSNNQ-ITDLPE-PLGnLTNLEELDLSGNQLT-DLPEPLAN 226

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149 202 -KDLDAIFLNNNRFESvIPGTIGKSKASVVTFANNKFSGcIPKSiGNMKNLNEIVFTGNNLTGCFPNEIGLLNNVTVFDA 280
Cdd:COG4886 227 lTNLETLDLSNNQLTD-LPELGNLTNLEELDLSNNQLTD-LPPL-ANLTNLKTLDLSNNQLTDLKLKELELLLGLNSLLL 303

                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|....*.
gi 15222149 281 SKNGFVGSLPSTLSGLASVEQLDLSHNKLTGFVVDKFCKLPNLDSFKFSYNFFNGE 336
Cdd:COG4886 304 LLLLLNLLELLILLLLLTTLLLLLLLLKGLLVTLTTLALSLSLLALLTLLLLLNLL 359

PHA03247

large tegument protein UL36; Provisional

401-793

1.66e-10

large tegument protein UL36; Provisional

Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 65.34 E-value: 1.66e-10

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149   401 TSEPKPSKPEPVMP----KPSDSSKPETPKTPEQPSPKPQPPKHESPKPEEPenkHELPKQKESPKPQPSK---PEDSPK 473
Cdd:PHA03247 2570 PPRPAPRPSEPAVTsrarRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDT---HAPDPPPPSPSPAANEpdpHPPPTV 2646

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149   474 PEQPKPEESPKPEQPQIP-------EPTKPVSPPneaQGPTPDDPYDA-SPVKNRRSPPPPkvedtrvpppqppmpspsp 545
Cdd:PHA03247 2647 PPPERPRDDPAPGRVSRPrrarrlgRAAQASSPP---QRPRRRAARPTvGSLTSLADPPPP------------------- 2704

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149   546 pspiysPPPPVHSPPPPVYSSPPPPHVYSPPPPVASPPPPSPPPPVHSPPPPPVFSPPPPVFSPPPPSPVYSPPPPSHSP 625
Cdd:PHA03247 2705 ------PPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAG 2778

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149   626 PPPVYSPPPPTFSPPPTHNTNQPPMGAPTPTQAPTPSSETTQVPTPSsesdqsqilSPVQAPTPVQSSTPSSEPTQVPTP 705
Cdd:PHA03247 2779 PPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPA---------GPLPPPTSAQPTAPPPPPGPPPPS 2849

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149   706 SSSESYQAPNlSPVQAPTPVQAPTTSSETSQVPTPSSESNQSPSQAPTPILEPVHAPTPNSKPvQSPTPSSEPVSSPEQS 785
Cdd:PHA03247 2850 LPLGGSVAPG-GDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQP-QAPPPPQPQPQPPPPP 2927


                  ....*...
gi 15222149   786 EEVEAPEP 793
Cdd:PHA03247 2928 QPQPPPPP 2935

PHA03247

large tegument protein UL36; Provisional

411-794

8.64e-10

large tegument protein UL36; Provisional

Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 63.03 E-value: 8.64e-10

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149   411 PVMPKPSDSSKPETPKTPEQPSPKPQPPKHESPKP---------EEPENKHELPK------------QKESPKPQPSKPE 469
Cdd:PHA03247 2478 PVYRRPAEARFPFAAGAAPDPGGGGPPDPDAPPAPsrlapailpDEPVGEPVHPRmltwirgleelaSDDAGDPPPPLPP 2557

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149   470 DSPKPEQ----PKPEESPKPEQPQI-PEPTKPVSPPNEAQGPTPDDPYDASPVKNRRSPPPPkvedtrvpppqppmpsps 544
Cdd:PHA03247 2558 AAPPAAPdrsvPPPRPAPRPSEPAVtSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPP------------------ 2619

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149   545 ppspiysppppvhsppppvyssPPPPHVYSPPPPVASPPPPSPPPPVHSPPPPPVFSPPPPVFSPPPPSPVYSPPPPSHS 624
Cdd:PHA03247 2620 ----------------------DTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQAS 2677

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149   625 PPPPVYSPPPPTFSPPPTHNTNQPPMGAPTPTQAPTPSSETTQVPTPSSESDQSQ---ILSPVQAPTPVQSSTPSSE--P 699
Cdd:PHA03247 2678 SPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASpalPAAPAPPAVPAGPATPGGParP 2757

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149   700 TQVPTPSSSESYQAPNLSPvqAPTPVQAPTTSSETSQVPTPSSESNQSPSQAPTPILEPVHAPTPNSKPV--QSPTPSSE 777
Cdd:PHA03247 2758 ARPPTTAGPPAPAPPAAPA--AGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAgpLPPPTSAQ 2835

                         410
                  ....*....|....*..
gi 15222149   778 PVSSPEQSEEVEAPEPT 794
Cdd:PHA03247 2836 PTAPPPPPGPPPPSLPL 2852

PLN03150

hypothetical protein; Provisional

221-313

2.72e-08

hypothetical protein; Provisional

Pssm-ID: 178695 [Multi-domain] Cd Length: 623 Bit Score: 57.52 E-value: 2.72e-08

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  221 TIGKSKASVVTFANNKFSGCIPKSIGNMKNLNEIVFTGNNLTGCFPNEIGLLNNVTVFDASKNGFVGSLPSTLSGLASVE 300
Cdd:PLN03150 414 TKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493

                         90
                 ....*....|...
gi 15222149  301 QLDLSHNKLTGFV 313
Cdd:PLN03150 494 ILNLNGNSLSGRV 506

PHA03247

large tegument protein UL36; Provisional

406-778

2.99e-08

large tegument protein UL36; Provisional

Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 58.03 E-value: 2.99e-08

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149   406 PSKPEPVMPKPSDSSKPETPKTPEQPSPKPQPPKHESPKPEEPENKHE-------LPKQKESP--KPQPSKPEDSPK--- 473
Cdd:PHA03247 2608 PRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDpapgrvsRPRRARRLgrAAQASSPPQRPRrra 2687

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149   474 ---------------PEQPKPEESPKPEQPQIPEPTKPVSppneAQGPTPDDPYDASPVKNRRSPPPPKVEDTRVPPPQP 538
Cdd:PHA03247 2688 arptvgsltsladppPPPPTPEPAPHALVSATPLPPGPAA----ARQASPALPAAPAPPAVPAGPATPGGPARPARPPTT 2763

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149   539 PMPSPSPPSPIYSPPPPVHSPPPPVYSSPPPPHVYSPPPPVASPPPPSPPPPVHSPPPPPVFSPPPPVFSPPPPSPVYSP 618
Cdd:PHA03247 2764 AGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPP 2843

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149   619 PPPSHSPPPPVYSPPPPTFspppthnTNQPPMGAPTPTQAPTPSSETTQVPTPS-SESDQSQILSPVQAPTPVQSSTPsS 697
Cdd:PHA03247 2844 GPPPPSLPLGGSVAPGGDV-------RRRPPSRSPAAKPAAPARPPVRRLARPAvSRSTESFALPPDQPERPPQPQAP-P 2915

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149   698 EPTQVPTPSSSESYQAPNLSPVQAPTPVqAPTTSSETSQVPTPSSESNQSPSQAPTPILEPVHAPTPNSKPVQSPTPSSE 777
Cdd:PHA03247 2916 PPQPQPQPPPPPQPQPPPPPPPRPQPPL-APTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTP 2994


                  .
gi 15222149   778 P 778
Cdd:PHA03247 2995 P 2995

PRK07764

DNA polymerase III subunits gamma and tau; Validated

683-794

5.39e-08

DNA polymerase III subunits gamma and tau; Validated

Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 56.53 E-value: 5.39e-08

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  683 PVQAPTPVQSSTPSSEPTQVPTPSSSESYQAPNLSPVQAPTPVQAP-TTSSETSQVPTPSSESNQSPSQAPTPILEPVHA 761
Cdd:PRK07764 390 GAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPaPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPA 469

                         90       100       110
                 ....*....|....*....|....*....|...
gi 15222149  762 PTPNSKPVQSPTPSSEPVSSPEQSEEVEAPEPT 794
Cdd:PRK07764 470 PAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAA 502

PHA03269

envelope glycoprotein C; Provisional

652-783

6.96e-08

envelope glycoprotein C; Provisional

Pssm-ID: 165527 [Multi-domain] Cd Length: 566 Bit Score: 56.28 E-value: 6.96e-08

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  652 APTPTQAPTP---SSETTQVPTPSSESDQSQILSPVQAPTPVQSSTPSSEPTQVPTPSSSESYQaPNLSPVQAPTPVQAP 728
Cdd:PHA03269  20 ANLNTNIPIPelhTSAATQKPDPAPAPHQAASRAPDPAVAPTSAASRKPDLAQAPTPAASEKFD-PAPAPHQAASRAPDP 98

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 15222149  729 TTSSETSQVPTPssESNQSPSQAPTPILEPVHAPTpnSKPVQSPTPSSEPVSSPE 783
Cdd:PHA03269  99 AVAPQLAAAPKP--DAAEAFTSAAQAHEAPADAGT--SAASKKPDPAAHTQHSPP 149

PspC_subgroup_2

pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ...

403-532

8.75e-08

Pssm-ID: 468202 [Multi-domain] Cd Length: 557 Bit Score: 55.93 E-value: 8.75e-08

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  403 EPKPSKPEPVMPKPSDSSKPETPKTPEQPSPkpqppkhESPKPEEPEnKHELPKQKESPKPQPSKPEDSPKPEQPKPEES 482
Cdd:NF033839 306 EKKEVKPEPETPKPEVKPQLEKPKPEVKPQP-------EKPKPEVKP-QLETPKPEVKPQPEKPKPEVKPQPEKPKPEVK 377

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 15222149  483 PKPEQPQIPEPTKPVSPPNEAQgPTPDDPydASPVKNRRSPPPPKVEDTR 532
Cdd:NF033839 378 PQPETPKPEVKPQPEKPKPEVK-PQPEKP--KPEVKPQPEKPKPEVKPQP 424

PRK07764

DNA polymerase III subunits gamma and tau; Validated

647-767

1.04e-07

DNA polymerase III subunits gamma and tau; Validated

Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 55.76 E-value: 1.04e-07

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  647 QPPMGAPTPTQAPTPSSETTQVPTPSSESDQSQilsPVQAPTPVQSSTPSSEPTQVPTPSSSESYQAPNLSPVQAPTPVQ 726
Cdd:PRK07764 398 APSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQ---PAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAP 474

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 15222149  727 APTTSSETSQVPTPSSESNQSPSQAPTPILEPVHAPTPNSK 767
Cdd:PRK07764 475 EPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAATLRER 515

PHA03378

EBNA-3B; Provisional

643-782

2.59e-07

EBNA-3B; Provisional

Pssm-ID: 223065 [Multi-domain] Cd Length: 991 Bit Score: 54.69 E-value: 2.59e-07

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  643 HNTNQPPMGAPTPTQAPtpssetTQVPTPssesdqsqiLSPVQAPtPVQSSTPSSEPTQVPTPSSSES-YQAPNLSPVQA 721
Cdd:PHA03378 681 ANTMLPIQWAPGTMQPP------PRAPTP---------MRPPAAP-PGRAQRPAAATGRARPPAAAPGrARPPAAAPGRA 744

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 15222149  722 PTPVQAPTTSSETSQVPTPSSESNQSPSqAPTPILEPVHAPTPNSKPVQSPTPSSEPVSSP 782
Cdd:PHA03378 745 RPPAAAPGRARPPAAAPGRARPPAAAPG-APTPQPPPQAPPAPQQRPRGAPTPQPPPQAGP 804

PLN03150

hypothetical protein; Provisional

261-355

3.80e-07

hypothetical protein; Provisional

Pssm-ID: 178695 [Multi-domain] Cd Length: 623 Bit Score: 53.67 E-value: 3.80e-07

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  261 LTGCFPNEIGLLNNVTVFDASKNGFVGSLPSTLSGLASVEQLDLSHNKLTGFVVDKFCKLPNLDSFKFSYNFFNGEAESC 340
Cdd:PLN03150 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAA 509

                         90
                 ....*....|....*.
gi 15222149  341 VPGRN-NGKQFDDTNN 355
Cdd:PLN03150 510 LGGRLlHRASFNFTDN 525

rne

PRK10811

ribonuclease E; Reviewed

655-794

3.93e-07

ribonuclease E; Reviewed

Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 53.89 E-value: 3.93e-07

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149   655 PTQAPTP------SSETTQ--------VPTPSSESDQSQILSPVQAPTPVQSSTPSSEPTQVPTPSSSESyQAPNlspVQ 720
Cdd:PRK10811  820 PTQSPMPltvacaSPEMASgkvwirypVVRPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVE-AVAE---VV 895

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15222149   721 APTPVQAPTTSSETSQVPTPSSESNQSPSQAPTPILEPVHAP-----TPNSKPVQSPTPSSEPVSSPEQSEEVEAPEPT 794
Cdd:PRK10811  896 EEPVVVAEPQPEEVVVVETTHPEVIAAPVTEQPQVITESDVAvaqevAEHAEPVVEPQDETADIEEAAETAEVVVAEPE 974

PRK07994

DNA polymerase III subunits gamma and tau; Validated

648-793

4.37e-07

DNA polymerase III subunits gamma and tau; Validated

Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 53.72 E-value: 4.37e-07

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  648 PPMGAPTPTQAPTPSSETTQVPTPSSESDQSQILSPVQAPTPVQSSTPSSEPTQVPTPSSSESYQAPNLSPVQAPTPVQA 727
Cdd:PRK07994 361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKK 440

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15222149  728 PTTSSETSQVPTPSSesnqspsqaptpiLEPVHAPTPNSKPVQSPTPSSEPVSSPEQSEEVEAPEP 793
Cdd:PRK07994 441 SEPAAASRARPVNSA-------------LERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEP 493

PTZ00449

104 kDa microneme/rhoptry antigen; Provisional

403-526

7.18e-07

104 kDa microneme/rhoptry antigen; Provisional

Pssm-ID: 185628 [Multi-domain] Cd Length: 943 Bit Score: 53.15 E-value: 7.18e-07

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  403 EPKPSKPEPVMPKPSDSSKPETPKtpeqpspkpqppkhespKPEEPEN-KHELPKQKESPKPQPSKPEDSPKPEQPKPEE 481
Cdd:PTZ00449 566 EHKPSKIPTLSKKPEFPKDPKHPK-----------------DPEEPKKpKRPRSAQRPTRPKSPKLPELLDIPKSPKRPE 628

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 15222149  482 SPK-PEQPqiPEPTKPVSPPNeaqgptPDDPYDASPVKNRRSPPPP 526
Cdd:PTZ00449 629 SPKsPKRP--PPPQRPSSPER------PEGPKIIKSPKPPKSPKPP 666

PHA03247

large tegument protein UL36; Provisional

400-791

1.25e-06

large tegument protein UL36; Provisional

Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 52.63 E-value: 1.25e-06

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149   400 RTSEPKPSKPEPVMPKP--SDSSKPETPKTPEQPSPKPQPPKHESPKPEEPENKHELPKQKESPKPqPSKPEDSPKPEQP 477
Cdd:PHA03247 2706 PTPEPAPHALVSATPLPpgPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAP-PAAPAAGPPRRLT 2784

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149   478 KPEESP-KPEQPQIPEPTKPVSPPNEAQGPTPDDPYDASPVKNrrSPPPPKVEDTRVPPPQPPMPSPSPPSPIYSPPPPV 556
Cdd:PHA03247 2785 RPAVASlSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGP--LPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDV 2862

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149   557 HSPPPPVYSSPPPPHVYSPPPPVASPPPPSPPPPVHSPPPPPVFSPPPPVFSPPPPSPVYSPPPPSHSPPPpvysppppt 636
Cdd:PHA03247 2863 RRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPP--------- 2933

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149   637 fspppthntnqPPMGAPTPTQAPTPSSETTQVPTPSSESDQSQILSPVQAPTP---VQSSTPSSEPTQVPTPS------S 707
Cdd:PHA03247 2934 -----------PPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPrfrVPQPAPSREAPASSTPPltghslS 3002

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149   708 SESYQAPNLSPVQAPTPvqAPTTSSETSQVPTPSSESNQSPSQAPTPILEPVHAPTPNSKPVQSPtPSSEPVSSPEQSEE 787
Cdd:PHA03247 3003 RVSSWASSLALHEETDP--PPVSLKQTLWPPDDTEDSDADSLFDSDSERSDLEALDPLPPEPHDP-FAHEPDPATPEAGA 3079


                  ....
gi 15222149   788 VEAP 791
Cdd:PHA03247 3080 RESP 3083

PLN03150

hypothetical protein; Provisional

184-270

2.85e-06

hypothetical protein; Provisional

Pssm-ID: 178695 [Multi-domain] Cd Length: 623 Bit Score: 50.97 E-value: 2.85e-06

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  184 LDLRYNEFEGSLPSEIFD-KDLDAIFLNNNRFESVIPGTIGK-SKASVVTFANNKFSGCIPKSIGNMKNLNEIVFTGNNL 261
Cdd:PLN03150 423 LGLDNQGLRGFIPNDISKlRHLQSINLSGNSIRGNIPPSLGSiTSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSL 502


                 ....*....
gi 15222149  262 TGCFPNEIG 270
Cdd:PLN03150 503 SGRVPAALG 511

PRK07764

DNA polymerase III subunits gamma and tau; Validated

669-842

7.79e-06

DNA polymerase III subunits gamma and tau; Validated

Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 49.60 E-value: 7.79e-06

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  669 PTPSSESDQSQILSPVQAPTPVQSSTPSSEPTQVPTPSSSESYQAPNLSPVQAPTPVQAPTTSSETSQVPTPSSESNQSP 748
Cdd:PRK07764 597 GEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGA 676

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  749 ---SQAPTPILEPVHAPTPNSKPVQSPTPSSEPVSSPEQSEEVEAPEPTpvnpSSVPSSSPSTDTSIPPPENNDDDDDGD 825
Cdd:PRK07764 677 apaAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAA----QGASAPSPAADDPVPLPPEPDDPPDPA 752

                        170
                 ....*....|....*..
gi 15222149  826 FVLPPHIGFQYASPPPP 842
Cdd:PRK07764 753 GAPAQPPPPPAPAPAAA 769

PRK14951

DNA polymerase III subunits gamma and tau; Provisional

646-755

8.15e-06

DNA polymerase III subunits gamma and tau; Provisional

Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 49.33 E-value: 8.15e-06

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  646 NQPPMGAPTPTQAPTPSSETTQVPTPSSESdQSQILSPVQAPTPVQSSTPSSEPTQVPTPSSSESYQAPNLSPVQAPTPV 725
Cdd:PRK14951 382 ARPEAAAPAAAPVAQAAAAPAPAAAPAAAA-SAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETV 460

                         90       100       110
                 ....*....|....*....|....*....|
gi 15222149  726 QAPTTssETSQVPTPSSESNQSPSQAPTPI 755
Cdd:PRK14951 461 AIPVR--VAPEPAVASAAPAPAAAPAAARL 488

PRK07994

DNA polymerase III subunits gamma and tau; Validated

646-764

8.45e-06

DNA polymerase III subunits gamma and tau; Validated

Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 49.48 E-value: 8.45e-06

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  646 NQPPMGAPTPTQAPTPSSETTQVPTPSSESDQSQILSPVQAPTPvqssTPSSEPTQVPTPSSSESYQAPNLSPVQAPTPV 725
Cdd:PRK07994 394 PQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATK----AKKSEPAAASRARPVNSALERLASVRPAPSAL 469

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 15222149  726 QAPTTSSETSQV-PTPSSESNQSPSQAPTPILEPV-HAPTP 764
Cdd:PRK07994 470 EKAPAKKEAYRWkATNPVEVKKEPVATPKALKKALeHEKTP 510

PspC_subgroup_1

NF033838

pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ...

400-518

8.56e-06

Pssm-ID: 468201 [Multi-domain] Cd Length: 684 Bit Score: 49.63 E-value: 8.56e-06

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  400 RTSEPKPSKPEPVMPKPSDSSKPETPKTPEQPSPkpqppkhESPKPEEPENKHELPKQKESPKPQPSKPEDSPKPEQPKP 479
Cdd:NF033838 366 RNEEKIKQAKAKVESKKAEATRLEKIKTDRKKAE-------EEAKRKAAEEDKVKEKPAEQPQPAPAPQPEKPAPKPEKP 438

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 15222149  480 EESPKPEQPQIPEPTKPVSPPNE--------AQGPTPDDPYDASPVK 518
Cdd:NF033838 439 AEQPKAEKPADQQAEEDYARRSEeeynrltqQQPPKTEKPAQPSTPK 485

PRK07994

DNA polymerase III subunits gamma and tau; Validated

657-816

9.45e-06

DNA polymerase III subunits gamma and tau; Validated

Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 49.09 E-value: 9.45e-06

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  657 QAPTPSSETTQVPTPSSESDQSQIlSPVQAPTPVQSSTPSSEPTQVPTPSSSESYQAPNLSPVQAPTPVQapttsSETSQ 736
Cdd:PRK07994 362 AAPLPEPEVPPQSAAPAASAQATA-APTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQ-----RAQGA 435

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  737 VPTPSSESNQSPSQAPTP-ILEPVHAPTPNSKPVQSPTPSSEPVSSPEQSEEVEAPEptpvnPSSVPSSSPSTDTSIPPP 815
Cdd:PRK07994 436 TKAKKSEPAAASRARPVNsALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKE-----PVATPKALKKALEHEKTP 510


                 .
gi 15222149  816 E 816
Cdd:PRK07994 511 E 511

PLN03150

hypothetical protein; Provisional

92-199

1.23e-05

hypothetical protein; Provisional

Pssm-ID: 178695 [Multi-domain] Cd Length: 623 Bit Score: 49.04 E-value: 1.23e-05

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149   92 YNGVYCApaLDDDSLT-VVAGVDLNHADIAGHLPPELGLMTDLALFHINSNRFCGIIPKSLSKLALMYEFDVSNNRFVGQ 170
Cdd:PLN03150 404 WSGADCQ--FDSTKGKwFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

                         90       100
                 ....*....|....*....|....*....
gi 15222149  171 FPEVSLSWPSLKFLDLRYNEFEGSLPSEI 199
Cdd:PLN03150 482 IPESLGQLTSLRILNLNGNSLSGRVPAAL 510

PspC_subgroup_2

pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ...

404-496

2.13e-05

Pssm-ID: 468202 [Multi-domain] Cd Length: 557 Bit Score: 48.23 E-value: 2.13e-05

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  404 PKPS-KPEPVMPKPSDSSKPETPKtpEQPSPKPqppkhESPKPeEPENKHELPKQKESPKPQPSKPEDSPKPEQPKPEES 482
Cdd:NF033839 405 PKPEvKPQPEKPKPEVKPQPEKPK--PEVKPQP-----EKPKP-EVKPQPEKPKPEVKPQPETPKPEVKPQPEKPKPEVK 476

                         90
                 ....*....|....
gi 15222149  483 PKPEQPQiPEPTKP 496
Cdd:NF033839 477 PQPEKPK-PDNSKP 489

PARM

pfam17061

PARM; Human PARM-1 is a mucin-like, androgen-regulated transmembrane protein that is present ...

652-758

2.57e-05

Pssm-ID: 465341 [Multi-domain] Cd Length: 296 Bit Score: 47.16 E-value: 2.57e-05

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149   652 APTPTQAPTPSSETTQVPTPSSESDQSQILSPVQAPTPVQSSTPSSEPTQVPTP-SSSESYQAPNLSPVQAPTPVQAPTT 730
Cdd:pfam17061 105 TPTPEEHSSGTPETSVPATGSQSPAESPTLTSPQAPASSPSSPSTSPPEVSSASvTTNHSSTETSTQPTGAPTTPESPTE 184

                          90       100
                  ....*....|....*....|....*...
gi 15222149   731 SSETSQVPTPSSESNQSPSQAPTPILEP 758
Cdd:pfam17061 185 EHSSGHTPTSHATSEPVPTETTPQTTVP 212

PRK10927

cell division protein FtsN;

657-794

3.16e-05

cell division protein FtsN;

Pssm-ID: 236797 [Multi-domain] Cd Length: 319 Bit Score: 46.98 E-value: 3.16e-05

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  657 QAPTPSSETTQVPTPSS-ESDQSQILSPVQAPTPVQSSTPSSEPTQVPTPSSSESY-----QAPNLS---PVQAPT---- 723
Cdd:PRK10927  97 RAPTEPSAGGEVKTPEQlTPEQRQLLEQMQADMRQQPTQLVEVPWNEQTPEQRQQTlqrqrQAQQLAeqqRLAQQSrtte 176

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15222149  724 -PVQAPTTSSETSQVPTPSSESNQSPSQAPTPILepvhAPTPNSKPVQSPTPSSEPVSSPeqseeVEAPEPT 794
Cdd:PRK10927 177 qSWQQQTRTSQAAPVQAQPRQSKPASTQQPYQDL----LQTPAHTTAQSKPQQAAPVTRA-----ADAPKPT 239

PHA03269

envelope glycoprotein C; Provisional

653-746

3.50e-05

envelope glycoprotein C; Provisional

Pssm-ID: 165527 [Multi-domain] Cd Length: 566 Bit Score: 47.42 E-value: 3.50e-05

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  653 PTPTQAPTPSSETTQVPTPSSESDQSQILSPVQAPTPVQSSTPssEPTQVPTpSSSESYQAPNLSPVQAPTPVQAPTTSS 732
Cdd:PHA03269  68 PDLAQAPTPAASEKFDPAPAPHQAASRAPDPAVAPQLAAAPKP--DAAEAFT-SAAQAHEAPADAGTSAASKKPDPAAHT 144

                         90
                 ....*....|....
gi 15222149  733 ETSQVPTPSSESNQ 746
Cdd:PHA03269 145 QHSPPPFAYTRSME 158

motB

PRK12799

flagellar motor protein MotB; Reviewed

644-773

5.83e-05

flagellar motor protein MotB; Reviewed

Pssm-ID: 183756 [Multi-domain] Cd Length: 421 Bit Score: 46.25 E-value: 5.83e-05

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  644 NTNQPPMGAPTPTQAPTPSSETTQVPTPSSEsdQSQILSPVQAPTPVqsSTPSSEPTQVPTPS------SSESYQAPNLS 717
Cdd:PRK12799 289 GLKQIDTHGTVPVAAVTPSSAVTQSSAITPS--SAAIPSPAVIPSSV--TTQSATTTQASAVAlssagvLPSDVTLPGTV 364

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 15222149  718 PVQAPTPVQAPTTSSETSQVPTPSSESNQSPSQAPTPILEPvhAPTPNSKPvqSPT 773
Cdd:PRK12799 365 ALPAAEPVNMQPQPMSTTETQQSSTGNITSTANGPTTSLPA--APASNIPV--SPT 416

PRK14949

DNA polymerase III subunits gamma and tau; Provisional

654-793

6.39e-05

DNA polymerase III subunits gamma and tau; Provisional

Pssm-ID: 237863 [Multi-domain] Cd Length: 944 Bit Score: 46.64 E-value: 6.39e-05

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  654 TPTQAPTPSSETTqvptPSSESDQSQILSPVQAPTPVQSSTPSSEPtqvptPSSSESYQAPNLSPVQAPT--------PV 725
Cdd:PRK14949 647 TPPSRAPPASLSK----PASSPDASQTSASFDLDPDFELATHQSVP-----EAALASGSAPAPPPVPDPYdrppweeaPE 717

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15222149  726 QAPTTSSETSQVPTPSSESNQSPSQAPTPILEPVHAPTPnSKPVQSPTPSSEPvSSPEQSEEVEAPEP 793
Cdd:PRK14949 718 VASANDGPNNAAEGNLSESVEDASNSELQAVEQQATHQP-QVQAEAQSPASTT-ALTQTSSEVQDTEL 783

Not5

COG5665

CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription];

653-794

8.01e-05

CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription];

Pssm-ID: 444384 [Multi-domain] Cd Length: 874 Bit Score: 46.58 E-value: 8.01e-05

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149 653 PTPTQAPTPSSETTQVPTPSSESDQSQILSPVQAPTPVQSSTPSSEPT-QVPTPSSSESYQAPNLSPvQAPTPVQA--PT 729
Cdd:COG5665 260 PKSQPTSPSGGTTPPSTNQLTTSNTPTSTAKAQPQPPTKKQPAKEPPSdTASGNPSAPSVLINSDSP-TSEDPATAsvPT 338

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15222149 730 TSsETSQVPTPSSESnQSPSQAPTPILEPV--HAPTPNSKPVQSP-TPSSEPVSSPEQSEEVEAPEPT 794
Cdd:COG5665 339 TE-ETTAFTTPSSVP-STPAEKDTPATDLAtpVSPTPPETSVDKKvSPDSATSSTKSEKEGGTASSPM 404

PRK14971

DNA polymerase III subunit gamma/tau;

685-799

8.43e-05

DNA polymerase III subunit gamma/tau;

Pssm-ID: 237874 [Multi-domain] Cd Length: 614 Bit Score: 46.31 E-value: 8.43e-05

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  685 QAPTPVQSSTPSSEPTQVPTPSSSESYQAPNlsPVQAPTPVQAPTTSSETSQVPTPSSESNQSPSqaptpilePVHAPTP 764
Cdd:PRK14971 361 QLTQKGDDASGGRGPKQHIKPVFTQPAAAPQ--PSAAAAASPSPSQSSAAAQPSAPQSATQPAGT--------PPTVSVD 430

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 15222149  765 NSKPVQSPTPSSEPVSSPEQSEEVEAPEPTPVNPS 799
Cdd:PRK14971 431 PPAAVPVNPPSTAPQAVRPAQFKEEKKIPVSKVSS 465

PspC_subgroup_2

pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ...

411-511

8.54e-05

Pssm-ID: 468202 [Multi-domain] Cd Length: 557 Bit Score: 46.30 E-value: 8.54e-05

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  411 PVMPKPSDSSKPETPKTPEQPspkpqppkheSPKPEEPENKhelpkqkesPKPQPSKPEDSPKPEQPKPEESPKPEQPQI 490
Cdd:NF033839 281 QDTPKEPGNKKPSAPKPGMQP----------SPQPEKKEVK---------PEPETPKPEVKPQLEKPKPEVKPQPEKPKP 341

                         90       100
                 ....*....|....*....|.
gi 15222149  491 PEPTKPVSPPNEAQgPTPDDP 511
Cdd:NF033839 342 EVKPQLETPKPEVK-PQPEKP 361

PRK14951

DNA polymerase III subunits gamma and tau; Provisional

648-778

1.09e-04

DNA polymerase III subunits gamma and tau; Provisional

Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 45.86 E-value: 1.09e-04

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  648 PPMGAPTPTQAP--TPSSETTQVPTPSSESDQSQILSPVQAPTPVQSSTPSSEPTQVPTPSSSESYQAPNLSPVQAPTPV 725
Cdd:PRK14951 366 PAAAAEAAAPAEkkTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAV 445

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 15222149  726 QAPTTSSetsqvPTPSSESNQSPSQAPTPILEPVHAPTPNSKPVQSPTPSSEP 778
Cdd:PRK14951 446 ALAPAPP-----AQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTEE 493

PRK10263

DNA translocase FtsK; Provisional

654-787

1.30e-04

DNA translocase FtsK; Provisional

Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 45.85 E-value: 1.30e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149   654 TPTQAPTPSSETTQVPTPSSESDQSQILSPVQAPTPVQSSTPSSEPTQVPTPSSSEsyqaPNLSPVQAPTPVQAPTTSSE 733
Cdd:PRK10263  746 TPIVEPVQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQ----PQYQQPQQPVAPQPQYQQPQ 821

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149   734 TSQVPTPSSESNQSPSqAPTP---ILEPVHAPTPNSKPVQSPT---PSSEPVSSPEQSEE 787
Cdd:PRK10263  822 QPVAPQPQYQQPQQPV-APQPqdtLLHPLLMRNGDSRPLHKPTtplPSLDLLTPPPSEVE 880

DUF5585

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.

647-794

1.33e-04

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.

Pssm-ID: 465521 [Multi-domain] Cd Length: 506 Bit Score: 45.34 E-value: 1.33e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149   647 QPPMGAPTPTQAPTPSSETTQVPTPSSESDQSQILSPVQAP-------TPVQSSTPSSEPTQVPTPSS---SESYQAPNL 716
Cdd:pfam17823 210 RGISTAATATGHPAAGTALAAVGNSSPAAGTVTAAVGTVTPaalatlaAAAGTVASAAGTINMGDPHArrlSPAKHMPSD 289

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149   717 SPVQAPTPVQAPTTSSETSQVPTPSSESNQSPSQAPTPILEPVHAPTPNSKPVQS-------------PTPSSEPVSSPE 783
Cdd:pfam17823 290 TMARNPAAPMGAQAQGPIIQVSTDQPVHNTAGEPTPSPSNTTLEPNTPKSVASTNlavvtttkaqakePSASPVPVLHTS 369

                         170
                  ....*....|.
gi 15222149   784 QSEEVEAPEPT 794
Cdd:pfam17823 370 MIPEVEATSPT 380

PRK10856

cytoskeleton protein RodZ;

644-746

1.33e-04

cytoskeleton protein RodZ;

Pssm-ID: 236776 [Multi-domain] Cd Length: 331 Bit Score: 45.02 E-value: 1.33e-04

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  644 NTNQPPMGAPTPTQAPTPSSETTQVPTPssesdqsqilspvqAPTPVQSSTPSSEPTQVPTPSSSESYQAPNLSPVQAPT 723
Cdd:PRK10856 165 DTSTTTDPATTPAPAAPVDTTPTNSQTP--------------AVATAPAPAVDPQQNAVVAPSQANVDTAATPAPAAPAT 230

                         90       100
                 ....*....|....*....|...
gi 15222149  724 PVQAPTTSSETSQVPTPSSESNQ 746
Cdd:PRK10856 231 PDGAAPLPTDQAGVSTPAADPNA 253

PHA03269

envelope glycoprotein C; Provisional

688-793

1.48e-04

envelope glycoprotein C; Provisional

Pssm-ID: 165527 [Multi-domain] Cd Length: 566 Bit Score: 45.49 E-value: 1.48e-04

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  688 TPVQSSTpSSEPTQVPTPSSSESyqAPNLSPVQAPTPVQAPTTSSETSQVPTPSSESNQSPSQAPTPIL--EPVHAPTPN 765
Cdd:PHA03269  13 ACINLII-ANLNTNIPIPELHTS--AATQKPDPAPAPHQAASRAPDPAVAPTSAASRKPDLAQAPTPAAseKFDPAPAPH 89

                         90       100
                 ....*....|....*....|....*...
gi 15222149  766 SKPVQSPTPSSEPVSSpeQSEEVEAPEP 793
Cdd:PHA03269  90 QAASRAPDPAVAPQLA--AAPKPDAAEA 115

Herpes_BLLF1

pfam05109

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...

654-815

1.49e-04

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.

Pssm-ID: 282904 [Multi-domain] Cd Length: 886 Bit Score: 45.68 E-value: 1.49e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149   654 TPTQAPTPSSETTQVPTPSSESDQSQILSPVQAPTPVQSSTPSSepTQVPTPSSSESYQAPNLSPVQAPTPVQAPTTSSE 733
Cdd:pfam05109 408 TATNATTTTHKVIFSKAPESTTTSPTLNTTGFAAPNTTTGLPSS--THVPTNLTAPASTGPTVSTADVTSPTPAGTTSGA 485

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149   734 TSQVPTPSSESNQSPSQAP--TPILEPVHAPTPNSKpvqSPTPSSEPVSSPEQSEEVEAPEPTPVNPSSVPSSSPSTDT- 810
Cdd:pfam05109 486 SPVTPSPSPRDNGTESKAPdmTSPTSAVTTPTPNAT---SPTPAVTTPTPNATSPTLGKTSPTSAVTTPTPNATSPTPAv 562


                  ....*
gi 15222149   811 SIPPP 815
Cdd:pfam05109 563 TTPTP 567

PHA03269

envelope glycoprotein C; Provisional

647-773

1.74e-04

envelope glycoprotein C; Provisional

Pssm-ID: 165527 [Multi-domain] Cd Length: 566 Bit Score: 45.10 E-value: 1.74e-04

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  647 QPPMGAPTPTQAptpsSETTQVPTPSSESDQSQILSPVQAPTPVQSSTPSSEPTqvptpSSSESYQAPNlsPVQAPTPVQ 726
Cdd:PHA03269  38 QKPDPAPAPHQA----ASRAPDPAVAPTSAASRKPDLAQAPTPAASEKFDPAPA-----PHQAASRAPD--PAVAPQLAA 106

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 15222149  727 APTtsSETSQVPTPSSESNQSPSQAPTPILEPVHAPTPNSKPVQSPT 773
Cdd:PHA03269 107 APK--PDAAEAFTSAAQAHEAPADAGTSAASKKPDPAAHTQHSPPPF 151

PRK14950

DNA polymerase III subunits gamma and tau; Provisional

723-816

1.90e-04

DNA polymerase III subunits gamma and tau; Provisional

Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 45.19 E-value: 1.90e-04

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  723 TPVQAPTTSSETSQVPTPSSEsNQSPSQAPTPilePVHAPTPNSKPVQSPTPSSEPVSSPEQSEEVEAPEPTPVNPSSVP 802
Cdd:PRK14950 361 VPVPAPQPAKPTAAAPSPVRP-TPAPSTRPKA---AAAANIPPKEPVRETATPPPVPPRPVAPPVPHTPESAPKLTRAAI 436

                         90
                 ....*....|....
gi 15222149  803 SSSPSTDTSIPPPE 816
Cdd:PRK14950 437 PVDEKPKYTPPAPP 450

LRR_8

pfam13855

Leucine rich repeat;

250-309

2.05e-04

Leucine rich repeat;

Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 39.82 E-value: 2.05e-04

                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15222149   250 NLNEIVFTGNNLT----GCFPNeiglLNNVTVFDASKNGFVGSLPSTLSGLASVEQLDLSHNKL 309
Cdd:pfam13855   2 NLRSLDLSNNRLTslddGAFKG----LSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61

rne

PRK10811

ribonuclease E; Reviewed

643-794

2.53e-04

ribonuclease E; Reviewed

Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 45.03 E-value: 2.53e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149   643 HNTNQPPMGAPTPTQAPTPSSETTQVPTPSSESDQSqilsPVQAPTPVQSSTPSSEPTQVPTPSSSESYQApnlsPVQAP 722
Cdd:PRK10811  856 EEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAV----AEVVEEPVVVAEPQPEEVVVVETTHPEVIAA----PVTEQ 927

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15222149   723 TPVQAPTTSSETSQVPtpsseSNQSPSQAPTPILEPVHAPTPNSK-PVQSPTPSSEPVSSPEQSEEVEAPEPT 794
Cdd:PRK10811  928 PQVITESDVAVAQEVA-----EHAEPVVEPQDETADIEEAAETAEvVVAEPEVVAQPAAPVVAEVAAEVETVT 995

PLN02328

lysine-specific histone demethylase 1 homolog

401-502

2.60e-04

lysine-specific histone demethylase 1 homolog

Pssm-ID: 215187 [Multi-domain] Cd Length: 808 Bit Score: 44.60 E-value: 2.60e-04

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  401 TSEPKPSKPEPVMPKPSDSSKPETPKTPEQPSPkpqppkhESPKPEEPENKHE--LPKQKESPKP-QPSKPEDSPKPEQP 477
Cdd:PLN02328   4 ETKEPEDPADNVNDVVSEASSPETDLSLSPSQS-------EQNIENDGQNSPEtqSPLTELQPSPlPPNTTLDAPVSDSQ 76

                         90       100
                 ....*....|....*....|....*
gi 15222149  478 KPEESPKpEQPQIPEPTKPVSPPNE 502
Cdd:PLN02328  77 GDESSSE-QQPQNPNSTEPAPPPKK 100

PRK07764

DNA polymerase III subunits gamma and tau; Validated

645-817

2.68e-04

DNA polymerase III subunits gamma and tau; Validated

Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 44.59 E-value: 2.68e-04

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  645 TNQPPMGAPTPTQAPTPSSETTQVPTPSSESDQSQILSPVQAPTPVQSSTPSSEPTQVPTPSSSESYQAPNLSPVQAPTP 724
Cdd:PRK07764 632 AAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPA 711

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  725 VQAPTTSSETSQVPTPSSESNQSPSQAPTPILEPVHAPTPNSKPVQSP-TPSSEPVSSPEQSEEVEAPEPtpvnpssvps 803
Cdd:PRK07764 712 GQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPpPPAPAPAAAPAAAPPPSPPSE---------- 781

                        170
                 ....*....|....
gi 15222149  804 SSPSTDTSIPPPEN 817
Cdd:PRK07764 782 EEEMAEDDAPSMDD 795

PTZ00449

104 kDa microneme/rhoptry antigen; Provisional

405-527

2.75e-04

104 kDa microneme/rhoptry antigen; Provisional

Pssm-ID: 185628 [Multi-domain] Cd Length: 943 Bit Score: 44.68 E-value: 2.75e-04

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  405 KPSKPEPVMPKPSDSSK-PETPKTPEQPSPKPQPPKHE--SPKPEEPENKHELPKQKESP----------KPQPSK---- 467
Cdd:PTZ00449 490 KKSKKKLAPIEEEDSDKhDEPPEGPEASGLPPKAPGDKegEEGEHEDSKESDEPKEGGKPgetkegevgkKPGPAKehkp 569

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 15222149  468 ---PEDSPKPEQPKPEESPK-PEQPQIPE-------PTKPVSPPNEAQGPTPDDPYDASPVKNRRSPPPPK 527
Cdd:PTZ00449 570 skiPTLSKKPEFPKDPKHPKdPEEPKKPKrprsaqrPTRPKSPKLPELLDIPKSPKRPESPKSPKRPPPPQ 640

PRK08691

DNA polymerase III subunits gamma and tau; Validated

645-793

2.82e-04

DNA polymerase III subunits gamma and tau; Validated

Pssm-ID: 236333 [Multi-domain] Cd Length: 709 Bit Score: 44.70 E-value: 2.82e-04

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  645 TNQPPMGAPTPTqaPTPSSETTQVP--TPSSE--SDQSQILSPV----QAPTPVQSSTPSSEPTQVPT-PSSSESYQApn 715
Cdd:PRK08691 384 TAEKETAAKKPQ--PRPEAETAQTPvqTASAAamPSEGKTAGPVsnqeNNDVPPWEDAPDEAQTAAGTaQTSAKSIQT-- 459

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  716 LSPVQAPTPVQAPTTSSETSQVPTPSSESnqsPSQAP---TPILEPVHAPTPNSKPVQSPTPS-SEPVSSPEQSEEVEAP 791
Cdd:PRK08691 460 ASEAETPPENQVSKNKAADNETDAPLSEV---PSENPiqaTPNDEAVETETFAHEAPAEPFYGyGFPDNDCPPEDGAEIP 536


                 ..
gi 15222149  792 EP 793
Cdd:PRK08691 537 PP 538

PRK10856

cytoskeleton protein RodZ;

672-786

3.01e-04

cytoskeleton protein RodZ;

Pssm-ID: 236776 [Multi-domain] Cd Length: 331 Bit Score: 43.86 E-value: 3.01e-04

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  672 SSESDQSQILSPVQAPTPVQSSTPSSEPTQVPTPSSSEsyqapnlspvqAPTPVQAPTTSSETSQVPTPSSeSNQSPSQA 751
Cdd:PRK10856 155 SQNSGQSVPLDTSTTTDPATTPAPAAPVDTTPTNSQTP-----------AVATAPAPAVDPQQNAVVAPSQ-ANVDTAAT 222

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 15222149  752 PTPIlepvhAPTPNSKPVQSPTpSSEPVSSPEQSE 786
Cdd:PRK10856 223 PAPA-----APATPDGAAPLPT-DQAGVSTPAADP 251

PRK14971

DNA polymerase III subunit gamma/tau;

660-792

3.04e-04

DNA polymerase III subunit gamma/tau;

Pssm-ID: 237874 [Multi-domain] Cd Length: 614 Bit Score: 44.38 E-value: 3.04e-04

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  660 TPSSETTQVPTPSSESDQSQILSPVQAPTPVQSSTPSSEPTQVPTPSSSesyQAPNLSPVQAPTPVQAPTTSSETSQVPT 739
Cdd:PRK14971 363 TQKGDDASGGRGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQP---SAPQSATQPAGTPPTVSVDPPAAVPVNP 439

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 15222149  740 PSsesnqSPSQAPTPILEPVHAPTPNSKpVQSPTPSSE-PVSSPEQSEEVEAPE 792
Cdd:PRK14971 440 PS-----TAPQAVRPAQFKEEKKIPVSK-VSSLGPSTLrPIQEKAEQATGNIKE 487

PRK13042

superantigen-like protein SSL4; Reviewed;

665-755

3.06e-04

superantigen-like protein SSL4; Reviewed;

Pssm-ID: 183854 [Multi-domain] Cd Length: 291 Bit Score: 43.47 E-value: 3.06e-04

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  665 TTQVPTPSSESDQSQILSPVQAPTPVqsSTPSSepTQVPTPSSSESYQAPNLSPVQAPTPVQAPTTSSETsQVPTPsses 744
Cdd:PRK13042  17 TTGVITTTTQAANATTPSSTKVEAPQ--STPPS--TKVEAPQSKPNATTPPSTKVEAPQQTPNATTPSST-KVETP---- 87

                         90
                 ....*....|...
gi 15222149  745 nQSPS--QAPTPI 755
Cdd:PRK13042  88 -QSPTtkQVPTEI 99

PRK11633

cell division protein DedD; Provisional

668-794

3.34e-04

cell division protein DedD; Provisional

Pssm-ID: 236940 [Multi-domain] Cd Length: 226 Bit Score: 43.07 E-value: 3.34e-04

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  668 VPTPSsESDQSQILSPVQAPTPVQsstpsseptqvPTPSSSESYQAPNlspvqaptpvqAPTTSSETSQVPTPSSESNQS 747
Cdd:PRK11633  44 VPKPG-DRDEPDMMPAATQALPTQ-----------PPEGAAEAVRAGD-----------AAAPSLDPATVAPPNTPVEPE 100

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 15222149  748 PSQAPTPILEPVHAPTPNSKPVQSPTPSSEPVSSPEQSEEvEAPEPT 794
Cdd:PRK11633 101 PAPVEPPKPKPVEKPKPKPKPQQKVEAPPAPKPEPKPVVE-EKAAPT 146

PLN03209

translocon at the inner envelope of chloroplast subunit 62; Provisional

652-792

3.43e-04

translocon at the inner envelope of chloroplast subunit 62; Provisional

Pssm-ID: 178748 [Multi-domain] Cd Length: 576 Bit Score: 44.15 E-value: 3.43e-04

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  652 APTPTQAPTPSSETTQV-PTPSSESDQSQilSPVQAPTPVQSSTPSSEPTqvPTPSSSESYQAPNLSPVQAPTPVQAPTT 730
Cdd:PLN03209 340 KPVPTKPVTPEAPSPPIeEEPPQPKAVVP--RPLSPYTAYEDLKPPTSPI--PTPPSSSPASSKSVDAVAKPAEPDVVPS 415

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15222149  731 SSETSQVPtpSSESNQSPSQAPTPiLEPvHAPTPNSKPVQSPTPSSEPVSSPEQSEEVEAPE 792
Cdd:PLN03209 416 PGSASNVP--EVEPAQVEAKKTRP-LSP-YARYEDLKPPTSPSPTAPTGVSPSVSSTSSVPA 473

PRK10263

DNA translocase FtsK; Provisional

404-532

4.92e-04

DNA translocase FtsK; Provisional

Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 43.92 E-value: 4.92e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149   404 PKPSKPEPVM-PKP------SDSSKPETPKTPEQPSPKPQPPKHESPKPEEPENKHELPKQKESPKPQPSKPEDSPKPEQ 476
Cdd:PRK10263  364 PGPQTGEPVIaPAPegypqqSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVA 443

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15222149   477 PKPEESPKPEQPQIPEPT--------KPVSPPNEAQGPTPDDPYDAspvknrrSPPPPKVEDTR 532
Cdd:PRK10263  444 GNAWQAEEQQSTFAPQSTyqteqtyqQPAAQEPLYQQPQPVEQQPV-------VEPEPVVEETK 500

LRR_8

pfam13855

Leucine rich repeat;

290-331

5.01e-04

Leucine rich repeat;

Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 39.04 E-value: 5.01e-04

                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 15222149   290 PSTLSGLASVEQLDLSHNKLTGFVVDKFCKLPNLDSFKFSYN 331
Cdd:pfam13855  18 DGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGN 59

PLN02217

probable pectinesterase/pectinesterase inhibitor

645-747

5.69e-04

probable pectinesterase/pectinesterase inhibitor

Pssm-ID: 215130 [Multi-domain] Cd Length: 670 Bit Score: 43.54 E-value: 5.69e-04

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  645 TNQPPMGAPTPTQAPTPSSETTQVPTPSSESDQSQILSPVQAPTPVQSSTPSSEPTQVPTPSSSESyqapnlSPVQAPTP 724
Cdd:PLN02217 569 TNSTPTGSAASSNTTFSSDSPSTVVAPSTSPPAGHLGSPPATPSKIVSPSTSPPASHLGSPSTTPS------SPESSIKV 642

                         90       100
                 ....*....|....*....|...
gi 15222149  725 VQAPTTSSETSqVPTPSSESNQS 747
Cdd:PLN02217 643 ASTETASPESS-IKVASTESSVS 664

PRK11907

bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;

648-746

6.02e-04

bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;

Pssm-ID: 237019 [Multi-domain] Cd Length: 814 Bit Score: 43.69 E-value: 6.02e-04

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  648 PPMGAPTPTQAPTPSSETTQVPTPSSESDQSQilspvqaPTPVqSSTPSSEPTQVPTPSSSESYQAPNlspvqaPTPVQA 727
Cdd:PRK11907  23 PKLAQAEEIVTTTPATSTEAEQTTPVESDATE-------EADN-TETPVAATTAAEAPSSSETAETSD------PTSEAT 88

                         90
                 ....*....|....*....
gi 15222149  728 PTTSSETSQVPTPSSESNQ 746
Cdd:PRK11907  89 DTTTSEARTVTPAATETSK 107

PRK12323

DNA polymerase III subunit gamma/tau;

648-846

6.19e-04

DNA polymerase III subunit gamma/tau;

Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 43.33 E-value: 6.19e-04

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  648 PPMGAPTPTQAPTPSSETTqvPTPSSESDQSQILSPVQAPTPVQSSTPSSEPTQVPTPSSSESYQAPNlsPVQAPTPVQA 727
Cdd:PRK12323 399 PAAPPAAPAAAPAAAAAAR--AVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARP--AAAGPRPVAA 474

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  728 PTTSSETSQVPTPSSesnqspsqAPTPILEPVHAPTPNSKPVQSPTPSSepvSSPEQSEEVEAPEPTPVNPSSVPSSSPS 807
Cdd:PRK12323 475 AAAAAPARAAPAAAP--------APADDDPPPWEELPPEFASPAPAQPD---AAPAGWVAESIPDPATADPDDAFETLAP 543

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 15222149  808 TDTSIPPPENNDDDDDGDFVLPPHIGfqyASPPPPMFQG 846
Cdd:PRK12323 544 APAAAPAPRAAAATEPVVAPRPPRAS---ASGLPDMFDG 579

PRK14950

DNA polymerase III subunits gamma and tau; Provisional

442-533

6.53e-04

DNA polymerase III subunits gamma and tau; Provisional

Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 43.26 E-value: 6.53e-04

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  442 SPKPEEPENKHELPKQKESPKPQPSkpeDSPKPEQPKPEESPKPEQPqiPEPTKPvsPPNEAQGPTPDDPYDASPVKNRR 521
Cdd:PRK14950 370 KPTAAAPSPVRPTPAPSTRPKAAAA---ANIPPKEPVRETATPPPVP--PRPVAP--PVPHTPESAPKLTRAAIPVDEKP 442

                         90
                 ....*....|....
gi 15222149  522 --SPPPPKVEDTRV 533
Cdd:PRK14950 443 kyTPPAPPKEEEKA 456

PRK13042

superantigen-like protein SSL4; Reviewed;

654-739

6.68e-04

superantigen-like protein SSL4; Reviewed;

Pssm-ID: 183854 [Multi-domain] Cd Length: 291 Bit Score: 42.70 E-value: 6.68e-04

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  654 TPTQ---APTPSSetTQVPTPSSESDQSQILSPVQAPTpvqSSTPSSepTQVPTPSSSESYQAPNLSPVQAPtpvQAPTT 730
Cdd:PRK13042  23 TTTQaanATTPSS--TKVEAPQSTPPSTKVEAPQSKPN---ATTPPS--TKVEAPQQTPNATTPSSTKVETP---QSPTT 92


                 ....*....
gi 15222149  731 ssetSQVPT 739
Cdd:PRK13042  93 ----KQVPT 97

Herpes_BLLF1

pfam05109

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...

654-794

7.19e-04

Pssm-ID: 282904 [Multi-domain] Cd Length: 886 Bit Score: 43.37 E-value: 7.19e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149   654 TPTQAPTPSSETTQVPTPSSESDQSQILSPvqaptpvQSSTPSSEPTqVPTPSSSESYQAPNLSPVQAPTPVQAPTTSSE 733
Cdd:pfam05109 475 SPTPAGTTSGASPVTPSPSPRDNGTESKAP-------DMTSPTSAVT-TPTPNATSPTPAVTTPTPNATSPTLGKTSPTS 546

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15222149   734 TSQVPTPSSESNQSPSQAPTPILE-PVHAPTPNSKPVQSPTPSSEPVSSPEQSEEVEAPEPT 794
Cdd:pfam05109 547 AVTTPTPNATSPTPAVTTPTPNATiPTLGKTSPTSAVTTPTPNATSPTVGETSPQANTTNHT 608

PRK14951

DNA polymerase III subunits gamma and tau; Provisional

695-815

7.36e-04

DNA polymerase III subunits gamma and tau; Provisional

Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 43.16 E-value: 7.36e-04

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  695 PSSEPTQVPTPSSSESYQAPNLSPVQAPTPVQApttsseTSQVPTPSSESNQSPSQAPTPILEPVHAPTPNS-KPVQSPT 773
Cdd:PRK14951 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAA------AAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAaAPAAAPA 439

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 15222149  774 PSSEPVSSPEQSEEVEAPEPTPVNPSSVPSSSPSTDTSIPPP 815
Cdd:PRK14951 440 AAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAA 481

PRK14950

DNA polymerase III subunits gamma and tau; Provisional

680-792

7.81e-04

DNA polymerase III subunits gamma and tau; Provisional

Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 42.87 E-value: 7.81e-04

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  680 ILSPVQAPTPVQSSTPSSEPTQvPTPSSSesyQAPNlSPVQAPTPVQAPTTSSETSQVPTPssesnqSPSQAPTPILEPV 759
Cdd:PRK14950 359 LLVPVPAPQPAKPTAAAPSPVR-PTPAPS---TRPK-AAAAANIPPKEPVRETATPPPVPP------RPVAPPVPHTPES 427

                         90       100       110
                 ....*....|....*....|....*....|....
gi 15222149  760 HAPTPNSK-PVQSPTPSSEPVSSPEQSEEVEAPE 792
Cdd:PRK14950 428 APKLTRAAiPVDEKPKYTPPAPPKEEEKALIADG 461

PHA03378

EBNA-3B; Provisional

649-816

9.26e-04

EBNA-3B; Provisional

Pssm-ID: 223065 [Multi-domain] Cd Length: 991 Bit Score: 43.13 E-value: 9.26e-04

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  649 PMGAPTPTQAPtpssettQVPTPSSESDQSQILSPVQAPTPVQSST---PSSEPTQVPTPSSSESYQAPnlsPVQAPTPV 725
Cdd:PHA03378 645 VLVFPTPHQPP-------QVEITPYKPTWTQIGHIPYQPSPTGANTmlpIQWAPGTMQPPPRAPTPMRP---PAAPPGRA 714

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  726 QAPTTSSETSQVPTPSSESNQSPSQAPTPILEPVHAPTPNSKPVQSPTPSSEPVSSPEQSEEVEAPEpTPVNPSSVPSSS 805
Cdd:PHA03378 715 QRPAAATGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGAPTPQPPPQ-APPAPQQRPRGA 793

                        170
                 ....*....|.
gi 15222149  806 PSTDtsiPPPE 816
Cdd:PHA03378 794 PTPQ---PPPQ 801

PRK11901

hypothetical protein; Reviewed

643-782

9.27e-04

hypothetical protein; Reviewed

Pssm-ID: 237015 [Multi-domain] Cd Length: 327 Bit Score: 42.36 E-value: 9.27e-04

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  643 HNTNQPPMgAPTPTQAPTPSSETTQ--VPTPSSESD-----QSQILSPVQAPTPVQSSTPSSEPTQVPTPSSSESYQAPn 715
Cdd:PRK11901 117 QDISAPPI-SPTPTQAAPPQTPNGQqrIELPGNISDalsqqQGQVNAASQNAQGNTSTLPTAPATVAPSKGAKVPATAE- 194

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15222149  716 lspvQAPTPVQAPTTSSetsqvPTPSsesnqSPSQAPTPilepvHAPTPNSKPVQSPTPSSEPVSSP 782
Cdd:PRK11901 195 ----THPTPPQKPATKK-----PAVN-----HHKTATVA-----VPPATSGKPKSGAASARALSSAP 242

DamX

COG3266

Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell ...

649-794

9.73e-04

Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell cycle control, cell division, chromosome partitioning];

Pssm-ID: 442497 [Multi-domain] Cd Length: 455 Bit Score: 42.53 E-value: 9.73e-04

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149 649 PMGAPTPTQAPTPSSETTQVPTPSSESDQSQILSPVQAPTPVQSSTPSSeptqvPTPSSSESYQAPNLSPVQAPTPVQAP 728
Cdd:COG3266 218 EAVAAAAELAALALLAAGAAEVLTARLVLLLLIIGSALKAPSQASSASA-----PATTSLGEQQEVSLPPAVAAQPAAAA 292

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15222149 729 TTSSETSQVPTPSSESNQSPsqAPTPILEPVHAPTpnsKPVQSPTpSSEPVSSPEQSEEVEAPEPT 794
Cdd:COG3266 293 AAQPSAVALPAAPAAAAAAA--APAEAAAPQPTAA---KPVVTET-AAPAAPAPEAAAAAAAPAAP 352

PRK14950

DNA polymerase III subunits gamma and tau; Provisional

401-500

9.84e-04

DNA polymerase III subunits gamma and tau; Provisional

Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 42.87 E-value: 9.84e-04

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  401 TSEPKPSKPEPVMPKPSDSSKPETPktpeqpspkpqppKHESPKPEEPenkhelpkQKESPKPQPSKPEDSPKPEQPKPE 480
Cdd:PRK14950 368 PAKPTAAAPSPVRPTPAPSTRPKAA-------------AAANIPPKEP--------VRETATPPPVPPRPVAPPVPHTPE 426

                         90       100
                 ....*....|....*....|
gi 15222149  481 ESPKPEQPQIPEPTKPVSPP 500
Cdd:PRK14950 427 SAPKLTRAAIPVDEKPKYTP 446

DamX

COG3266

Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell ...

656-777

9.90e-04

Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell cycle control, cell division, chromosome partitioning];

Pssm-ID: 442497 [Multi-domain] Cd Length: 455 Bit Score: 42.53 E-value: 9.90e-04

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149 656 TQAPTPSSETTQVPTPSSESDQSQILSPVQAPTPVQSSTPSSEPTQVPTPsssesyqAPNLSPVQAPTPVQAPTtssets 735
Cdd:COG3266 255 LKAPSQASSASAPATTSLGEQQEVSLPPAVAAQPAAAAAAQPSAVALPAA-------PAAAAAAAAPAEAAAPQ------ 321

                        90       100       110       120
                ....*....|....*....|....*....|....*....|..
gi 15222149 736 QVPTPSSESNQSPSQAPTPILEPVhAPTPNSKPVQSPTPSSE 777
Cdd:COG3266 322 PTAAKPVVTETAAPAAPAPEAAAA-AAAPAAPAVAKKLAADE 362

PRK08691

DNA polymerase III subunits gamma and tau; Validated

657-816

1.01e-03

DNA polymerase III subunits gamma and tau; Validated

Pssm-ID: 236333 [Multi-domain] Cd Length: 709 Bit Score: 42.77 E-value: 1.01e-03

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  657 QAPTPSSETTQV-PTPSSESDQSQilSPVQapTPVQSSTPSSEPTQVPTpSSSESYQAPNLSPVQAPTPVQAPTTSSETS 735
Cdd:PRK08691 381 SAQTAEKETAAKkPQPRPEAETAQ--TPVQ--TASAAAMPSEGKTAGPV-SNQENNDVPPWEDAPDEAQTAAGTAQTSAK 455

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  736 QVPTPSSESNQSPSQAPTPILEPVHAPTPNSKpVQSPTPS-SEPVSSPEQSEEV--EAP-EPTPVNPSSVPSSSPSTDTS 811
Cdd:PRK08691 456 SIQTASEAETPPENQVSKNKAADNETDAPLSE-VPSENPIqATPNDEAVETETFahEAPaEPFYGYGFPDNDCPPEDGAE 534


                 ....*
gi 15222149  812 IPPPE 816
Cdd:PRK08691 535 IPPPD 539

Atrophin-1

pfam03154

Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ...

411-793

1.29e-03

Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.

Pssm-ID: 460830 [Multi-domain] Cd Length: 991 Bit Score: 42.45 E-value: 1.29e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149   411 PVMPKPSDS-SKPETPKTPEQPSPKPQPPKHESPKPEEPENKHELPKQKESPKPQPSKPEDSPkpeQPKPEESPKPEQPQ 489
Cdd:pfam03154 146 PSIPSPQDNeSDSDSSAQQQILQTQPPVLQAQSGAASPPSPPPPGTTQAATAGPTPSAPSVPP---QGSPATSQPPNQTQ 222

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149   490 IP-------------EPTKPVSPPNEAQGPTPDDPYDASPVKnrrSPPPPKVEDTRVPPPQPPMPSPSPPSPIYSPPPPV 556
Cdd:pfam03154 223 STaaphtliqqtptlHPQRLPSPHPPLQPMTQPPPPSQVSPQ---PLPQPSLHGQMPPMPHSLQTGPSHMQHPVPPQPFP 299

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149   557 HSPPPPVYSSPPPPHVYSPPPPVASPPPPSPPPPVHSPPPPPVFSPPPPVFSPPPPSPVYSPPPPSHSPPPPVYSPPPPT 636
Cdd:pfam03154 300 LTPQSSQSQVPPGPSPAAPGQSQQRIHTPPSQSQLQSQQPPREQPLPPAPLSMPHIKPPPTTPIPQLPNPQSHKHPPHLS 379

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149   637 FSPPPTHNTNQPPMGAPTPTQAPTPSSETTQVPTPSSESDQSQILSPVQAPTPVQSSTPSSEPTQVPTPSSSESYQAPNL 716
Cdd:pfam03154 380 GPSPFQMNSNLPPPPALKPLSSLSTHHPPSAHPPPLQLMPQSQQLPPPPAQPPVLTQSQSLPPPAASHPPTSGLHQVPSQ 459

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15222149   717 SPVQAPTPVQAPTTSSETSQVPTPSSESNQSPSQAPTPILEPVHAPTPNSKPVQSPtPSSEPVSSPEQSEEVEAPEP 793
Cdd:pfam03154 460 SPFPQHPFVPGGPPPITPPSGPPTSTSSAMPGIQPPSSASVSSSGPVPAAVSCPLP-PVQIKEEALDEAEEPESPPP 535

PRK14971

DNA polymerase III subunit gamma/tau;

647-755

1.38e-03

DNA polymerase III subunit gamma/tau;

Pssm-ID: 237874 [Multi-domain] Cd Length: 614 Bit Score: 42.07 E-value: 1.38e-03

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  647 QPPMGAPTPTQAPTPSSETTQVPTPSSesdqsqilSPVQAPTPVQSSTPSSEPtqVPTPSSSESYQAPNLSPVQAPTPVQ 726
Cdd:PRK14971 390 PQPSAAAAASPSPSQSSAAAQPSAPQS--------ATQPAGTPPTVSVDPPAA--VPVNPPSTAPQAVRPAQFKEEKKIP 459

                         90       100       110
                 ....*....|....*....|....*....|...
gi 15222149  727 APTTSSETSQVPTPSSESNQSPSQ----APTPI 755
Cdd:PRK14971 460 VSKVSSLGPSTLRPIQEKAEQATGnikeAPTGT 492

PRK07764

DNA polymerase III subunits gamma and tau; Validated

624-793

1.42e-03

DNA polymerase III subunits gamma and tau; Validated

Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 42.28 E-value: 1.42e-03

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  624 SPPPPVYSPPPPTFSPPPTHNTNQPPMGAPTPTQAPTPSSETTQVPTPSSESDQSQilsPVQAPTPVQSSTPSSEPTQVP 703
Cdd:PRK07764 614 RPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGW---PAKAGGAAPAAPPPAPAPAAP 690

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  704 TPSSSESYQAPNLSPVQAPTPVQAPTTSSETSQVPTPSSESNQSPSQAPTPILEPVHAPTPNSKPVQS-PTPSSEPVSSP 782
Cdd:PRK07764 691 AAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPpPPPAPAPAAAP 770

                        170
                 ....*....|.
gi 15222149  783 EQSEEVEAPEP 793
Cdd:PRK07764 771 AAAPPPSPPSE 781

PRK04654

sec-independent translocase; Provisional

644-743

1.52e-03

sec-independent translocase; Provisional

Pssm-ID: 135173 [Multi-domain] Cd Length: 214 Bit Score: 40.95 E-value: 1.52e-03

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  644 NTNQPPMGAPTPTQAPTPssettqVPTPSSESDQSQilsPVqAPTPVQSSTPSSEPTQVPTPSSSESYQAPnlSPVQAPT 723
Cdd:PRK04654 124 QVDAAAGAEPGAGQAHTP------VPAPAPVIAQAQ---PI-APAPHQTLVPAPHDTIVPAPHAAHLPSAP--ATPVSVA 191

                         90       100
                 ....*....|....*....|
gi 15222149  724 PVQAPTTSSETSQVPTPSSE 743
Cdd:PRK04654 192 PVDAGTSASPTPSEPTKIQE 211

PRK13914

invasion associated endopeptidase;

644-749

1.55e-03

invasion associated endopeptidase;

Pssm-ID: 237555 [Multi-domain] Cd Length: 481 Bit Score: 42.10 E-value: 1.55e-03

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  644 NTNQPPmgAPTPTQAP------TPS-SETTQVPTPSSESDQSQILSPVQAPTPVQSSTPSSEPTQVPTPSSSESYQAPNL 716
Cdd:PRK13914 248 NTATPK--AEVKTEAPaaekqaAPVvKENTNTNTATTEKKETTTQQQTAPKAPTEAAKPAPAPSTNTNANKTNTNTNTNT 325

                         90       100       110
                 ....*....|....*....|....*....|...
gi 15222149  717 SPVQAPTPVQAPTTSSETSQVPTPSSESNQSPS 749
Cdd:PRK13914 326 NNTNTSTPSKNTNTNTNSNTNTNSNTNANQGSS 358

PRK12727

flagellar biosynthesis protein FlhF;

647-789

1.60e-03

flagellar biosynthesis protein FlhF;

Pssm-ID: 237182 [Multi-domain] Cd Length: 559 Bit Score: 41.90 E-value: 1.60e-03

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  647 QPPMGAP-TPTQAPTPSSETTQVPTPSSESD-QSQILSPVqaPTPVQSSTPSSEPTQVPTPSSSESYQAPNLSPVQAPTP 724
Cdd:PRK12727 123 QAPAAAPvRAASIPSPAAQALAHAAAVRTAPrQEHALSAV--PEQLFADFLTTAPVPRAPVQAPVVAAPAPVPAIAAALA 200

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 15222149  725 VQAPTTSSETSQVPTPSSESNqspsQAPTPILEPVHAPTPNSKPVQSPTPSSEPVSSPEQSEEVE 789
Cdd:PRK12727 201 AHAAYAQDDDEQLDDDGFDLD----DALPQILPPAALPPIVVAPAAPAALAAVAAAAPAPQNDEE 261

PTZ00249

variable surface protein Vir28; Provisional

649-786

1.65e-03

variable surface protein Vir28; Provisional

Pssm-ID: 140276 [Multi-domain] Cd Length: 516 Bit Score: 41.94 E-value: 1.65e-03

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  649 PMGAPTPTQAPTPSSETTQVPTPSSESDQSQILSPVQAPTPVQSSTPSSEPTQVPTPSSSESYQAPNLSPVQAPTPVqaP 728
Cdd:PTZ00249 263 PVSVSSPQAHGRHPGETHTPPLVTVPSSKAHDRNPVQTPTPTSVSGYSSQAKGLEKQAGGESERTSSVPSEQFPLPL--P 340

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 15222149  729 TTSSETSQVPTPSSESNQSPSQAptpilepvhaptpnsKPVQSPTPSSEPVSSPEQSE 786
Cdd:PTZ00249 341 VLLPLGQSGPLESSESEETDEYA---------------GPKGLPEPELELVELQEEDQ 383

PRK10856

cytoskeleton protein RodZ;

664-751

1.67e-03

cytoskeleton protein RodZ;

Pssm-ID: 236776 [Multi-domain] Cd Length: 331 Bit Score: 41.55 E-value: 1.67e-03

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  664 ETTQVPTPSSESDQSQIlSPVQAPTPVQSSTPSSEPTQVPTPSSSESYQ-----APNLSPVQAPTPVQAPTTSSETSQVP 738
Cdd:PRK10856 158 SGQSVPLDTSTTTDPAT-TPAPAAPVDTTPTNSQTPAVATAPAPAVDPQqnavvAPSQANVDTAATPAPAAPATPDGAAP 236

                         90
                 ....*....|...
gi 15222149  739 TPSSESNQSPSQA 751
Cdd:PRK10856 237 LPTDQAGVSTPAA 249

PRK12323

DNA polymerase III subunit gamma/tau;

669-791

1.81e-03

DNA polymerase III subunit gamma/tau;

Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 41.79 E-value: 1.81e-03

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  669 PTPSSESDQSQILSPVQAPTPVQSSTPSSEPTQVPTPSSSESYQAPNLSPVQA-PTPVQAPTTSSETSQVPTPSSESNQS 747
Cdd:PRK12323 374 PATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRsPAPEALAAARQASARGPGGAPAPAPA 453

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 15222149  748 PSQAPTPILEP-VHAPTPNSKPVQSPTPSSEPVSSPEQSEEVEAP 791
Cdd:PRK12323 454 PAAAPAAAARPaAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPP 498

PRK07764

DNA polymerase III subunits gamma and tau; Validated

624-793

1.90e-03

DNA polymerase III subunits gamma and tau; Validated

Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 41.90 E-value: 1.90e-03

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  624 SPPPPVYSPPPPTFSPPPTHNTNQPPMGAPTPTQAPTPSSETTQVPTPSSESDQSQI-LSPVQAPTPVQSSTPSSEPTQV 702
Cdd:PRK07764 621 PAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAApAAPPPAPAPAAPAAPAGAAPAQ 700

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  703 PTPSssesyQAPNLSPVQAPTPVQAPTTSSETSQVPTPSSESNQSPSQAPTPILEPVHAPTPnSKPVQSPTPSSEPVSSP 782
Cdd:PRK07764 701 PAPA-----PAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQ-PPPPPAPAPAAAPAAAP 774

                        170
                 ....*....|.
gi 15222149  783 EQSEEVEAPEP 793
Cdd:PRK07764 775 PPSPPSEEEEM 785

PHA03307

transcriptional regulator ICP4; Provisional

401-778

1.95e-03

transcriptional regulator ICP4; Provisional

Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 42.08 E-value: 1.95e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149   401 TSEPKPSKPEPVMPKPSDSSKPETPktpeqpspKPQPPKHESPKPEEPEnkhelpkqkespkpqPSKPEDSPKPEQPKPE 480
Cdd:PHA03307   87 TPTWSLSTLAPASPAREGSPTPPGP--------SSPDPPPPTPPPASPP---------------PSPAPDLSEMLRPVGS 143

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149   481 ESPKPEQPQIPEPTKPVSPPNEAQGPTPDDPYDASPVKNRRSPPPPKVEdtRVPPPQPPMPSPSPPSPIYSPPPPVHSPP 560
Cdd:PHA03307  144 PGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAE--PPPSTPPAAASPRPPRRSSPISASASSPA 221

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149   561 PPVYSSPPPPHVYSPPPPVASPPPPSPPPPVHSPPPPPVFSPPPPVFSPPPPSPVYSPPPPSHSPPPPVYSPPPPTFSPP 640
Cdd:PHA03307  222 PAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPS 301

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149   641 PTHNTNQPPMGAPTPTQAPTPSSETTQvPTPSSESDQSQILSPVQAPTPVQSSTPSSEPTQVPTPSSSESYQAPNLSPVQ 720
Cdd:PHA03307  302 SPGSGPAPSSPRASSSSSSSRESSSSS-TSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAA 380

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 15222149   721 APTPVQAPTTSSETSQVPTPSSESNQSPSQAPTPI-------LEPVHAPTPNSKPVQSPTPSSEP 778
Cdd:PHA03307  381 SAGRPTRRRARAAVAGRARRRDATGRFPAGRPRPSpldagaaSGAFYARYPLLTPSGEPWPGSPP 445

PRK10118

flagellar hook length control protein FliK;

651-787

2.07e-03

flagellar hook length control protein FliK;

Pssm-ID: 236652 [Multi-domain] Cd Length: 408 Bit Score: 41.39 E-value: 2.07e-03

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  651 GAPTPTQAPTPSSETTQVPTPSSESdqsqilspvqaptpvqSSTPSSEPTQVPTPSSSESYQAPNLSPVQAPTPVQAPTT 730
Cdd:PRK10118 152 GQDNTTPVADAPSTVLPAEKPTLLT----------------KDMPSAPQDETHTLSSDEHEKGLTSAQLTTAQPDDAPGT 215

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 15222149  731 SSETSQVPTPSSESNQSPSQAPTPILEPVhAPTPNSKPVQSPTPSSEPV-SSPEQSEE 787
Cdd:PRK10118 216 PAQPLTPLAAEAQAKAEVISTPSPVTAAA-SPTITPHQTQPLPTAAAPVlSAPLGSHE 272

PRK10672

endolytic peptidoglycan transglycosylase RlpA;

649-751

2.12e-03

endolytic peptidoglycan transglycosylase RlpA;

Pssm-ID: 236733 [Multi-domain] Cd Length: 361 Bit Score: 41.20 E-value: 2.12e-03

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  649 PMGAPTPTQAPTPSSETTQVPTPSSESDQSQiLSPVQ------APTPVQSSTP-SSEPTQVPTPSssesyqAPNLSPVQA 721
Cdd:PRK10672 203 GMGTPSVQPAPAPQGDVLPVSNSTLKSEDPT-GAPVTssgflgAPTTLAPGVLeGSEPTPTAPSS------APATAPAAA 275

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 15222149  722 PTPVQAPTTSSETS---QVPTPSSESN-----QSPSQA 751
Cdd:PRK10672 276 APQAAATSSSASGNfvvQVGAVSDQQRaqqwqQSLSQR 313

PHA01929

putative scaffolding protein

646-746

2.20e-03

putative scaffolding protein

Pssm-ID: 177328 Cd Length: 306 Bit Score: 41.19 E-value: 2.20e-03

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  646 NQPPMGAPTPtqAPTPSSETTQVPTPSSESDQSQILSPVQAPTPVqsstpssePTQVPTPSSSEsyQAPNlSPVQAPTPV 725
Cdd:PHA01929  18 NVPPAAAPTP--QPNPVIQPQAPVQPGQPGAPQQLAIPTQQPQPV--------PTSAMTPHVVQ--QAPA-QPAPAAPPA 84

                         90       100
                 ....*....|....*....|.
gi 15222149  726 QAPTTSSETSQVPTPSSESNQ 746
Cdd:PHA01929  85 AGAALPEALEVPPPPAFTPNG 105

PHA03307

transcriptional regulator ICP4; Provisional

441-778

2.25e-03

transcriptional regulator ICP4; Provisional

Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 41.70 E-value: 2.25e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149   441 ESPKPEEPENKHELPKQKESPKPQPskPEDSPKPEQPKPEESPKPEQPQIPEPTKPVSPPneaQGPTPDDPYDASPVKNR 520
Cdd:PHA03307   66 EPPTGPPPGPGTEAPANESRSTPTW--SLSTLAPASPAREGSPTPPGPSSPDPPPPTPPP---ASPPPSPAPDLSEMLRP 140

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149   521 RSPPPPKVEDTRVPPPQPPMPSPSPPSPIYSPPPPVHSPPPPVYSSPPPPHVYSPPPPVASPPPPSPPPPVHSPPPPPVF 600
Cdd:PHA03307  141 VGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSP 220

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149   601 SPPPPVFSPPPPSPVYSPPPPSHSPPPPVYSPPPPTFSPPpthntnqPPMGAPTPTQAPTPSSETTQVPTPSSESDQSQI 680
Cdd:PHA03307  221 APAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRP-------APITLPTRIWEASGWNGPSSRPGPASSSSSPRE 293

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149   681 LSPVQAPTPVQSSTPSSEPTQVPTPSSSESYQAPNLSPVQAPTPVQAPTTSSETSQVPTPSSEsnqSPSQAPTPilePVH 760
Cdd:PHA03307  294 RSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRP---PPPADPSS---PRK 367

                         330
                  ....*....|....*...
gi 15222149   761 APTPNSKPVQSPTPSSEP 778
Cdd:PHA03307  368 RPRPSRAPSSPAASAGRP 385

PRK14951

DNA polymerase III subunits gamma and tau; Provisional

686-816

2.36e-03

DNA polymerase III subunits gamma and tau; Provisional

Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 41.62 E-value: 2.36e-03

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  686 APTPVQSSTPSSEPTQVPTPSSsESYQAPNLSPVQAPTPVQAPTTSSETSQVPTPSSESNQ-SPSQAPTPILEPVHAPtp 764
Cdd:PRK14951 372 AAAPAEKKTPARPEAAAPAAAP-VAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAaAPAAAPAAAPAAVALA-- 448

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 15222149  765 nskPVQSPTPSSEPVSSPEQseevEAPEPTPVNPSSVPSSSPSTDTSIPPPE 816
Cdd:PRK14951 449 ---PAPPAQAAPETVAIPVR----VAPEPAVASAAPAPAAAPAAARLTPTEE 493

COG5373

Uncharacterized membrane protein [Function unknown];

453-527

2.45e-03

Uncharacterized membrane protein [Function unknown];

Pssm-ID: 444140 [Multi-domain] Cd Length: 854 Bit Score: 41.52 E-value: 2.45e-03

                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 15222149 453 ELPKQKESPKPQPSKPEDsPKPEQPKPEESPKPEQPQIPEPTKPVSPPNEAQGPTPDDPYDASPVKNRRSPPPPK 527
Cdd:COG5373  32 ELEAELAEAAEAASAPAE-PEPEAAAAATAAAPEAAPAPVPEAPAAPPAAAEAPAPAAAAPPAEAEPAAAPAAAS 105

PPP1R42

cd21340

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...

270-331

2.46e-03

Pssm-ID: 411060 [Multi-domain] Cd Length: 220 Bit Score: 40.15 E-value: 2.46e-03

                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15222149 270 GLLNNVTVFDASKNGfVGSLpSTLSGLASVEQLDLSHNKLTGF--VVDKFCKLPNLDSFKFSYN 331
Cdd:cd21340 117 ALSNSLRVLNISGNN-IDSL-EPLAPLRNLEQLDASNNQISDLeeLLDLLSSWPSLRELDLTGN 178

DUF5585

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.

645-754

2.46e-03

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.

Pssm-ID: 465521 [Multi-domain] Cd Length: 506 Bit Score: 41.48 E-value: 2.46e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149   645 TNQPPMGAPTPTQAPTPSSETTQVPTPSSESDQSqilSPVQAPTPVQSSTPSSEPtqVPTPSSSESYQAPNLSPVQAPTP 724
Cdd:pfam17823 311 STDQPVHNTAGEPTPSPSNTTLEPNTPKSVASTN---LAVVTTTKAQAKEPSASP--VPVLHTSMIPEVEATSPTTQPSP 385

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 15222149   725 V------QAPTTSSETSQVPTPSSESnqSPSQAPTP 754
Cdd:pfam17823 386 LlptqgaAGPGILLAPEQVATEATAG--TASAGPTP 419

Pneumo_att_G

pfam05539

Pneumovirinae attachment membrane glycoprotein G;

653-782

2.47e-03

Pneumovirinae attachment membrane glycoprotein G;

Pssm-ID: 114270 [Multi-domain] Cd Length: 408 Bit Score: 41.19 E-value: 2.47e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149   653 PTPTQAPTPSSETTQVPTPSSESDQSQILSPVQAPtpvQSSTPSSEPTQVPTPSSSesyQAPNLSPVQAPTPVQAPTTSS 732
Cdd:pfam05539 188 TYPSQVTPQSQPATQGHQTATANQRLSSTEPVGTQ---GTTTSSNPEPQTEPPPSQ---RGPSGSPQHPPSTTSQDQSTT 261

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 15222149   733 ETSQVPTPSSESNQSPSQAPTPILEPVHAPTPNSKPVQSPTP---------SSEPVSSP 782
Cdd:pfam05539 262 GDGQEHTQRRKTPPATSNRRSPHSTATPPPTTKRQETGRPTPrptattqsgSSPPHSSP 320

PHA03132

thymidine kinase; Provisional

643-767

2.49e-03

thymidine kinase; Provisional

Pssm-ID: 222997 [Multi-domain] Cd Length: 580 Bit Score: 41.29 E-value: 2.49e-03

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  643 HNTNQPPMGAPTPTqAPTPSSETTQVPTPSSESDQSQILSPVQAPTPV-----QSSTPSSEPTQVPTPSSSESYQaPNLS 717
Cdd:PHA03132  60 TGSGGGVATSTIYT-VPRPPRGPEQTLDKPDSLPASRELPPGPTPVPPggfrgASSPRLGADSTSPRFLYQVNFP-VILA 137

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 15222149  718 PVQAPTPVQAPTTSSETSQVPTPSSESNQSPSQAPTPILEPVHAPTPNSK 767
Cdd:PHA03132 138 PIGESNSSSEELSEEEEHSRPPPSESLKVKNGGKVYPKGFSKHKTHKRSE 187

PLN02744

dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex

446-500

2.87e-03

dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex

Pssm-ID: 215397 [Multi-domain] Cd Length: 539 Bit Score: 40.99 E-value: 2.87e-03

                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 15222149  446 EEPENKHELPKQKESPKPQPSKPEDSPKPEQPKPEESPKPEQPQIPEPTKPVSPP 500
Cdd:PLN02744 189 EEEEDIGKFKDYKPSSSAAPAAPKAKPSPPPPKEEEVEKPASSPEPKASKPSAPP 243

PLN02217

probable pectinesterase/pectinesterase inhibitor

700-794

3.14e-03

probable pectinesterase/pectinesterase inhibitor

Pssm-ID: 215130 [Multi-domain] Cd Length: 670 Bit Score: 41.23 E-value: 3.14e-03

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  700 TQVPTPSSSESYQAPNLSpvqAPTPVQAPTTSSETSQVPTPSSESNQ--SPSQAPtPILEPVHAPTPNSKPVQSPTPSSE 777
Cdd:PLN02217 570 NSTPTGSAASSNTTFSSD---SPSTVVAPSTSPPAGHLGSPPATPSKivSPSTSP-PASHLGSPSTTPSSPESSIKVAST 645

                         90
                 ....*....|....*..
gi 15222149  778 PVSSPEQSEEVEAPEPT 794
Cdd:PLN02217 646 ETASPESSIKVASTESS 662

PRK14960

DNA polymerase III subunit gamma/tau;

708-784

3.33e-03

DNA polymerase III subunit gamma/tau;

Pssm-ID: 237868 [Multi-domain] Cd Length: 702 Bit Score: 41.19 E-value: 3.33e-03

                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15222149  708 SESYQAPNLSPVQAPTPVQAPTTSSETSQVpTPSSESNQSPSQAPTPILEPVHAP--TPNSKPVQSPTPSSEPVSSPEQ 784
Cdd:PRK14960 369 SEPVQQNGQAEVGLNSQAQTAQEITPVSAV-QPVEVISQPAMVEPEPEPEPEPEPepEPEPEPEPEPEPEPEPEPQPNQ 446

PRK12757

cell division protein FtsN; Provisional

649-791

3.35e-03

cell division protein FtsN; Provisional

Pssm-ID: 237191 [Multi-domain] Cd Length: 256 Bit Score: 40.03 E-value: 3.35e-03

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  649 PMGAPTPTqAPTPSSETTQVPTPSSEsdQSQILSPVQA-----PTPVqSSTPSSEPTQvPTPSSSESYQAPNLSPVQAPT 723
Cdd:PRK12757  59 QIGVPTPT-EPSAGGEVNSPTQLTDE--QRQLLEQMQAdmrqqPTQL-SEVPYNEQTP-QVPRSTVQIQQQAQQQQPPAT 133

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15222149  724 PVQapttssetsqvptpssesnQSPSQAPTPILEPVHAPTPNSKPVQSPTPSSEPVSSPEQSEEVEAP 791
Cdd:PRK12757 134 TAQ-------------------PQPVTPPRQTTAPVQPQTPAPVRTQPAAPVTQAVEAPKVEAEKEKE 182

PRK11633

cell division protein DedD; Provisional

442-491

3.36e-03

cell division protein DedD; Provisional

Pssm-ID: 236940 [Multi-domain] Cd Length: 226 Bit Score: 39.99 E-value: 3.36e-03

                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 15222149  442 SPKPEEPENKHELPKQKESPKPQPSKPEDSPKPEQPKPEESPKPEQPQIP 491
Cdd:PRK11633  96 PVEPEPAPVEPPKPKPVEKPKPKPKPQQKVEAPPAPKPEPKPVVEEKAAP 145

DUF4045

pfam13254

Domain of unknown function (DUF4045); This presumed domain is functionally uncharacterized. ...

682-815

3.60e-03

Domain of unknown function (DUF4045); This presumed domain is functionally uncharacterized. This domain family is found in bacteria and eukaryotes, and is typically between 384 and 430 amino acids in length.

Pssm-ID: 433066 [Multi-domain] Cd Length: 415 Bit Score: 40.54 E-value: 3.60e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149   682 SPVQAPTPVqsSTPSSEPTQVPTPSSSESYQAPNLSPVQAPTPVQAPTTSSETSQVPTPSSESNQSPSQAPTPILEPVHA 761
Cdd:pfam13254 198 NSFKEVTPV--GLMRSPAPGGHSKSPSVSGISADSSPTKEEPSEEADTLSTDKEQSPAPTSASEPPPKTKELPKDSEEPA 275

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 15222149   762 PTPNSKPVQSPTPSSEPVSSPEQSEEVEAP---EPTPVNPSSVPSSSPSTDTSIPPP 815
Cdd:pfam13254 276 APSKSAEASTEKKEPDTESSPETSSEKSAPsllSPVSKASIDKPLSSPDRDPLSPKP 332

PAT1

pfam09770

Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ...

648-770

3.61e-03

Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.

Pssm-ID: 401645 [Multi-domain] Cd Length: 846 Bit Score: 41.17 E-value: 3.61e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149   648 PPMGAPTPTQAPTPSSETTQVPTPSS-----ESDQSQILSPVQAPTPVQSSTPSSEPTQVPTPSSSESYQAPNLSPVQAP 722
Cdd:pfam09770 166 APKKAAAPAPAPQPAAQPASLPAPSRkmmslEEVEAAMRAQAKKPAQQPAPAPAQPPAAPPAQQAQQQQQFPPQIQQQQQ 245

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 15222149   723 TPVQAPTTSSETSQVPTPS--SESNQSPSQAPTPILEPV------HAPTPNSKPVQ 770
Cdd:pfam09770 246 PQQQPQQPQQHPGQGHPVTilQRPQSPQPDPAQPSIQPQaqqfhqQPPPVPVQPTQ 301

PRK14948

DNA polymerase III subunit gamma/tau;

644-794

3.68e-03

DNA polymerase III subunit gamma/tau;

Pssm-ID: 237862 [Multi-domain] Cd Length: 620 Bit Score: 40.72 E-value: 3.68e-03

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  644 NTNQPPMGAPTPTQAPTPSSETTQVPTPSSESDQSQIL-SPVQAPTPVQSSTPSSEPTQVPT-----------------P 705
Cdd:PRK14948 376 NPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPpIPVPAEPTEPSPTPPANAANAPPslnleelwqqilaklelP 455

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  706 SSSE--SYQA---------------PNL--------------------SPVQ-----------APTPVQAPTTSSETSQV 737
Cdd:PRK14948 456 STRMllSQQAelvsldsnraviavsPNWlgmvqsrkplleqafakvlgRSIKlnlesqsgsasNTAKTPPPPQKSPPPPA 535

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 15222149  738 PTPSSESNQSPSQAPTPILEPVHAPTPNSkPVQSPTPSSEPVSSPEQSEEVEAPEPT 794
Cdd:PRK14948 536 PTPPLPQPTATAPPPTPPPPPPTATQASS-NAPAQIPADSSPPPPIPEEPTPSPTKD 591

Chi1

COG3469

Chitinase [Carbohydrate transport and metabolism];

643-776

3.73e-03

Chitinase [Carbohydrate transport and metabolism];

Pssm-ID: 442692 [Multi-domain] Cd Length: 534 Bit Score: 40.89 E-value: 3.73e-03

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149 643 HNTNQPPMGAPTPTQAPTPSSETTQVPTPSSESDQSQILSPVQAPTPVQSST---PSSEPTQVPTPSSSESYQAPNLSPV 719
Cdd:COG3469  78 TTATATAAAAAATSTSATLVATSTASGANTGTSTVTTTSTGAGSVTSTTSSTagsTTTSGASATSSAGSTTTTTTVSGTE 157

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 15222149 720 QAPT-PVQAPTTSSETSQVPTPSSeSNQSPSQAPTPILEPVHAPTPNSKPVQSPTPSS 776
Cdd:COG3469 158 TATGgTTTTSTTTTTTSASTTPSA-TTTATATTASGATTPSATTTATTTGPPTPGLPK 214

SAV_2336_NTERM

NF041121

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...

441-526

3.93e-03

Pssm-ID: 469044 [Multi-domain] Cd Length: 473 Bit Score: 40.76 E-value: 3.93e-03

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  441 ESPKPEEPENKH-ELPKQKESPKPQPSKPEDSPKPEQPKPEESPKPEQPQIPeptkPVSPPneAQGPTPDDPYDASPVKN 519
Cdd:NF041121  20 APPSPEGPAPTAaSQPATPPPPAAPPSPPGDPPEPPAPEPAPLPAPYPGSLA----PPPPP--PPGPAGAAPGAALPVRV 93


                 ....*..
gi 15222149  520 RRSPPPP 526
Cdd:NF041121  94 PAPPALP 100

PRK12727

flagellar biosynthesis protein FlhF;

652-794

4.03e-03

flagellar biosynthesis protein FlhF;

Pssm-ID: 237182 [Multi-domain] Cd Length: 559 Bit Score: 40.74 E-value: 4.03e-03

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  652 APTPtQAPTPSSETTQVPTP-SSESDQSQILSPVQAPTPVQSSTPSSEPTQVPTpsssesyQAPnlspvqAPTPVQAPTT 730
Cdd:PRK12727  70 APAP-QAPTKPAAPVHAPLKlSANANMSQRQRVASAAEDMIAAMALRQPVSVPR-------QAP------AAAPVRAASI 135

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15222149  731 SSETSQVPTPSSESNQSPSQ--APTPILEPVHAPTPNSKPVQSPTPSSEPVSSPEQSEEVEAPEPT 794
Cdd:PRK12727 136 PSPAAQALAHAAAVRTAPRQehALSAVPEQLFADFLTTAPVPRAPVQAPVVAAPAPVPAIAAALAA 201

PRK04654

sec-independent translocase; Provisional

692-794

4.18e-03

sec-independent translocase; Provisional

Pssm-ID: 135173 [Multi-domain] Cd Length: 214 Bit Score: 39.41 E-value: 4.18e-03

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  692 SSTPSSEPTQVPTPSSSESYQ-------APNLSPVQAPTPVQAPTTSSETSQVPTPSSESNQSPSQAPTPILEPVHAPTP 764
Cdd:PRK04654 104 SATPVATPLELAHADLSASAQvdaaagaEPGAGQAHTPVPAPAPVIAQAQPIAPAPHQTLVPAPHDTIVPAPHAAHLPSA 183

                         90       100       110
                 ....*....|....*....|....*....|
gi 15222149  765 NSKPVQSPTPSSEPVSSPEQSEEVEAPEPT 794
Cdd:PRK04654 184 PATPVSVAPVDAGTSASPTPSEPTKIQEKQ 213

PTZ00144

dihydrolipoamide succinyltransferase; Provisional

441-507

4.85e-03

dihydrolipoamide succinyltransferase; Provisional

Pssm-ID: 240289 [Multi-domain] Cd Length: 418 Bit Score: 40.44 E-value: 4.85e-03

                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15222149  441 ESPKPEEPENKHELPKQKESPKPQPSKPEDSPKPEQPKPEESPKPEQPQIPEPTKPVSPPNEAQGPT 507
Cdd:PTZ00144 122 GAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPTPVARADPR 188

PLN03150

hypothetical protein; Provisional

284-335

5.31e-03

hypothetical protein; Provisional

Pssm-ID: 178695 [Multi-domain] Cd Length: 623 Bit Score: 40.18 E-value: 5.31e-03

                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 15222149  284 GFVGSLPSTLSGLASVEQLDLSHNKLTGFVVDKFCKLPNLDSFKFSYNFFNG 335
Cdd:PLN03150 429 GLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNG 480

PTZ00249

variable surface protein Vir28; Provisional

647-793

5.39e-03

variable surface protein Vir28; Provisional

Pssm-ID: 140276 [Multi-domain] Cd Length: 516 Bit Score: 40.40 E-value: 5.39e-03

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  647 QPP--MGAPTPTQAPTPSSETTQVPTPSSESDQSQILSPVQAPTPVQSSTPSSE-----PTQVPTPSSSESYqapnLSPV 719
Cdd:PTZ00249 238 RPPkhISFSSPHAHGRPPVETRPPNPVSVSSPQAHGRHPGETHTPPLVTVPSSKahdrnPVQTPTPTSVSGY----SSQA 313

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15222149  720 QApTPVQAPTTSSETSQVPtpssesnqsPSQAPTPIlepvhaptpnskPVQSPTPSSEPVSSPEQSEEVEAPEP 793
Cdd:PTZ00249 314 KG-LEKQAGGESERTSSVP---------SEQFPLPL------------PVLLPLGQSGPLESSESEETDEYAGP 365

PRK10263

DNA translocase FtsK; Provisional

689-847

6.64e-03

DNA translocase FtsK; Provisional

Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 40.45 E-value: 6.64e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149   689 PVQSSTPSSEPTQVPTPSSS--ESYQAPnLSPVQAPTPVQAPTTSSETSQV---PTPSSESNQsPSQAP-----TPILEP 758
Cdd:PRK10263  309 PLLNGAPITEPVAVAAAATTatQSWAAP-VEPVTQTPPVASVDVPPAQPTVawqPVPGPQTGE-PVIAPapegyPQQSQY 386

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149   759 VHAPTPNSKPVQSPTPSSEPVSSPEQSEEVEAPEPTPVNPSSVPSSSPSTDTSIPPPENNDDDDDGDFVLPPHIGFQYAS 838
Cdd:PRK10263  387 AQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTEQ 466

                         170
                  ....*....|
gi 15222149   839 P-PPPMFQGY 847
Cdd:PRK10263  467 TyQQPAAQEP 476

PRK14948

DNA polymerase III subunit gamma/tau;

644-778

6.70e-03

DNA polymerase III subunit gamma/tau;

Pssm-ID: 237862 [Multi-domain] Cd Length: 620 Bit Score: 39.95 E-value: 6.70e-03

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  644 NTNQPPMGAPTPTQAPTPSSETTQVPTPSSESDQ-SQILSPVQAPTP-----------------------------VQSS 693
Cdd:PRK14948 411 ASPPIPVPAEPTEPSPTPPANAANAPPSLNLEELwQQILAKLELPSTrmllsqqaelvsldsnraviavspnwlgmVQSR 490

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  694 TP-------------------SSEPTQVPTPSSSESYQAPNLSPVQAPTPVQAPTTSSETSQVPTPSSESNQSPSQAPTP 754
Cdd:PRK14948 491 KPlleqafakvlgrsiklnleSQSGSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQI 570

                        170       180
                 ....*....|....*....|....
gi 15222149  755 ILEPVHAPTPNSKPVQSPTPSSEP 778
Cdd:PRK14948 571 PADSSPPPPIPEEPTPSPTKDSSP 594

PRK14948

DNA polymerase III subunit gamma/tau;

722-794

6.99e-03

DNA polymerase III subunit gamma/tau;

Pssm-ID: 237862 [Multi-domain] Cd Length: 620 Bit Score: 39.95 E-value: 6.99e-03

                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15222149  722 PTPVQAPTTSSETSQVPTPSSESNQSPSQAPTPI-LEPVHAPTPNSKPVQSPTPSSEPVSSPEQSEEVEAPEPT 794
Cdd:PRK14948 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSApKTKQAATTPSPPPAKASPPIPVPAEPTEPSPTPPANAAN 434

DUF5585

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.

652-814

7.21e-03

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.

Pssm-ID: 465521 [Multi-domain] Cd Length: 506 Bit Score: 39.94 E-value: 7.21e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149   652 APTPTQAPTPSSETTQVPTPSSESDQSQILSPVQAPTPVQSSTPSSEPTQVPTPSSSESYQAPNLSPVQAPTPVQAPTTS 731
Cdd:pfam17823 136 ALPSEAFSAPRAAACRANASAAPRAAIAAASAPHAASPAPRTAASSTTAASSTTAASSAPTTAASSAPATLTPARGISTA 215

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149   732 SETSQVPTPSSESNQSPSQAPTPILEPVHAPTPNSKPVQSPTPSSEPVSSPEQSEEVEAPEPTPVNPSSVPSSSPSTDTS 811
Cdd:pfam17823 216 ATATGHPAAGTALAAVGNSSPAAGTVTAAVGTVTPAALATLAAAAGTVASAAGTINMGDPHARRLSPAKHMPSDTMARNP 295


                  ...
gi 15222149   812 IPP 814
Cdd:pfam17823 296 AAP 298

PRK10819

transport protein TonB; Provisional

401-524

7.72e-03

transport protein TonB; Provisional

Pssm-ID: 236768 [Multi-domain] Cd Length: 246 Bit Score: 38.90 E-value: 7.72e-03

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  401 TSEPKPSKPEP---VMPKPSDSSKPETPKtpeqpsPKPQPPKHESPKPEepenkhelPKQKesPKPQPSKpedsPKPEQP 477
Cdd:PRK10819  58 LEPPQAVQPPPepvVEPEPEPEPIPEPPK------EAPVVIPKPEPKPK--------PKPK--PKPKPVK----KVEEQP 117

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 15222149  478 KPEESPKPEQPQIP----EPTKPVSPPNEAQGPTPDDPYDASPVKNRRSPP 524
Cdd:PRK10819 118 KREVKPVEPRPASPfentAPARPTSSTATAAASKPVTSVSSGPRALSRNQP 168

PRK13042

superantigen-like protein SSL4; Reviewed;

720-794

7.78e-03

superantigen-like protein SSL4; Reviewed;

Pssm-ID: 183854 [Multi-domain] Cd Length: 291 Bit Score: 39.23 E-value: 7.78e-03

                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15222149  720 QAPTPVQAPTTSSETSQVPTPSSESnQSPSQAPTpilepvhAPTPNSKPVQSPTPSSEPVSSPeqSEEVEAPE-PT 794
Cdd:PRK13042  26 QAANATTPSSTKVEAPQSTPPSTKV-EAPQSKPN-------ATTPPSTKVEAPQQTPNATTPS--STKVETPQsPT 91

PRK10263

DNA translocase FtsK; Provisional

403-529

7.80e-03

DNA translocase FtsK; Provisional

Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 40.07 E-value: 7.80e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149   403 EPKPSKPEPVMPKPSDSSKPETPKTPEQPSPKPQPPKHESPKPEEP---ENKHELPKQKESPKPQPSKPEDSPKPEQPKP 479
Cdd:PRK10263  752 VQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPvapQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQ 831

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 15222149   480 EespkPEQPQIPEPTKPVSPP----NEAQGPTpDDPYDASPVKNRRSPPPPKVE 529
Cdd:PRK10263  832 Q----PQQPVAPQPQDTLLHPllmrNGDSRPL-HKPTTPLPSLDLLTPPPSEVE 880

PRK14950

DNA polymerase III subunits gamma and tau; Provisional

645-773

7.82e-03

DNA polymerase III subunits gamma and tau; Provisional

Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 39.79 E-value: 7.82e-03

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  645 TNQPPMGAPTPTQA-PTPSSETTQVPTPSSESdqsqilSPVQAPTPVQsSTPSSEPTQVPTPSSSESyqAPNLSPVQAPT 723
Cdd:PRK14950 368 PAKPTAAAPSPVRPtPAPSTRPKAAAAANIPP------KEPVRETATP-PPVPPRPVAPPVPHTPES--APKLTRAAIPV 438

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 15222149  724 PVQApttsseTSQVPTPSSESnQSPSQAPTPILEPVHAPTPNSK---PVQSPT 773
Cdd:PRK14950 439 DEKP------KYTPPAPPKEE-EKALIADGDVLEQLEAIWKQILrdvPPRSPA 484

PLN03209

translocon at the inner envelope of chloroplast subunit 62; Provisional

655-794

8.02e-03

translocon at the inner envelope of chloroplast subunit 62; Provisional

Pssm-ID: 178748 [Multi-domain] Cd Length: 576 Bit Score: 39.91 E-value: 8.02e-03

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149  655 PTQAPTPSSETTQVPTPSSESDQSQILSPVQAPTP-VQSSTPSSEPTQVPTPSS---SESYQAPNLSPVQAPTP---VQA 727
Cdd:PLN03209 382 PPTSPIPTPPSSSPASSKSVDAVAKPAEPDVVPSPgSASNVPEVEPAQVEAKKTrplSPYARYEDLKPPTSPSPtapTGV 461

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15222149  728 PTTSSETSQVP--------TPSSESNQSPSQAPTPI---LEPVHAPTPNSKPVQSPTPSSEPVSSPEQSEEVEAPEPT 794
Cdd:PLN03209 462 SPSVSSTSSVPavpdtapaTAATDAAAPPPANMRPLspyAVYDDLKPPTSPSPAAPVGKVAPSSTNEVVKVGNSAPPT 539

rad23

TIGR00601

UV excision repair protein Rad23; All proteins in this family for which functions are known ...

675-752

8.10e-03

Pssm-ID: 273167 [Multi-domain] Cd Length: 378 Bit Score: 39.49 E-value: 8.10e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222149   675 SDQSQILSPVQAPTPVQSST--PSSEPTQVPTPSSSESyQAPNLSPVQAPTPVQAP-TTSSETSQVPTPSSESNQSPSQA 751
Cdd:TIGR00601  65 KEKDFVVVMVSKPKTGTGKVapPAATPTSAPTPTPSPP-ASPASGMSAAPASAVEEkSPSEESATATAPESPSTSVPSSG 143


                  .
gi 15222149   752 P 752
Cdd:TIGR00601 144 S 144

DUF5585