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Conserved domains on  [gi|15221074|ref|NP_175243|]
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nucleic acid-binding/zinc ion-binding protein [Arabidopsis thaliana]

Protein Classification

zinc finger CCHC domain-containing protein( domain architecture ID 111312)

zinc finger CCHC (ZCCHC) domain-containing protein contains a zinc knuckle or a zinc binding motif, CX2CX4HX4C, where X can be any amino acid, and may bind single-stranded RNA

Gene Ontology:  GO:0008270|GO:0003676
PubMed:  33787465|11179890|12665246

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
zf-CCHC_4 super family cl18687
Zinc knuckle; The zinc knuckle is a zinc binding motif composed of the the following ...
 62-92 6.57e-12

Zinc knuckle; The zinc knuckle is a zinc binding motif composed of the the following CX2CX4HX4C where X can be any amino acid. This particular family is found in plant proteins.


The actual alignment was detected with superfamily member pfam14392:

Pssm-ID: 433930  Cd Length: 49  Bit Score: 59.27  E-value: 6.57e-12
                          10        20        30
                  ....*....|....*....|....*....|.
gi 15221074    62 EGAMIGFEYEKLRRICTNCCRITHHVNNCPF 92
Cdd:pfam14392  19 EWALIRFKYERLRRFCFICGRLGHSDKFCPK 49
 
Name Accession Description Interval E-value
zf-CCHC_4 pfam14392
Zinc knuckle; The zinc knuckle is a zinc binding motif composed of the the following ...
 62-92 6.57e-12

Zinc knuckle; The zinc knuckle is a zinc binding motif composed of the the following CX2CX4HX4C where X can be any amino acid. This particular family is found in plant proteins.


Pssm-ID: 433930  Cd Length: 49  Bit Score: 59.27  E-value: 6.57e-12
                          10        20        30
                  ....*....|....*....|....*....|.
gi 15221074    62 EGAMIGFEYEKLRRICTNCCRITHHVNNCPF 92
Cdd:pfam14392  19 EWALIRFKYERLRRFCFICGRLGHSDKFCPK 49
 
Name Accession Description Interval E-value
zf-CCHC_4 pfam14392
Zinc knuckle; The zinc knuckle is a zinc binding motif composed of the the following ...
 62-92 6.57e-12

Zinc knuckle; The zinc knuckle is a zinc binding motif composed of the the following CX2CX4HX4C where X can be any amino acid. This particular family is found in plant proteins.


Pssm-ID: 433930  Cd Length: 49  Bit Score: 59.27  E-value: 6.57e-12
                          10        20        30
                  ....*....|....*....|....*....|.
gi 15221074    62 EGAMIGFEYEKLRRICTNCCRITHHVNNCPF 92
Cdd:pfam14392  19 EWALIRFKYERLRRFCFICGRLGHSDKFCPK 49
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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