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Conserved domains on  [gi|15217722|ref|NP_174654|]
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phloem protein 2-A4 [Arabidopsis thaliana]

Protein Classification

PP2 domain-containing protein( domain architecture ID 10626467)

PP2 (phloem protein 2) domain-containing protein; PP2 is one of the most abundant and enigmatic proteins in the phloem sap, and is translocated in the assimilate stream where its lectin activity or RNA-binding properties can exert effects over long distances

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PP2 pfam14299
Phloem protein 2; Phloem protein 2 (PP2) is one of the most abundant and enigmatic proteins in ...
 13-163 1.09e-48

Phloem protein 2; Phloem protein 2 (PP2) is one of the most abundant and enigmatic proteins in the phloem sap. PP2 is translocated in the assimilate stream where its lectin activity or RNA-binding properties can exert effects over long distances.


:

Pssm-ID: 464128  Cd Length: 151  Bit Score: 154.29  E-value: 1.09e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15217722    13 MIYARDLSIAWSDKDEYWSWLPLrydiSSEKLVDAAVLEAVCWLDVNGKFDTRELTLETTYEVVYVVKLEDTASGWNI-P 91
Cdd:pfam14299   5 MLSARALSITWGDDPRYWRWIPL----PESRFSEVAELLQVCWLEIRGKIDTRMLSPGTTYSAYFVFKLGDSSYGWDDvP 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15217722    92 VNLKLTLPDGKKR------PQERsmclkehiGKRWIDISAGEFVTSPDNA-GEISFSMYETKSCCWKRGLFVKCVEIRP 163
Cdd:pfam14299  81 VEFSVSVGSSSKRfvclrrPKER--------EDGWMEIELGEFVVNEGGEdGEVEFSLYEVKGGHWKGGLIVEGIEIRP 151
 
Name Accession Description Interval E-value
PP2 pfam14299
Phloem protein 2; Phloem protein 2 (PP2) is one of the most abundant and enigmatic proteins in ...
 13-163 1.09e-48

Phloem protein 2; Phloem protein 2 (PP2) is one of the most abundant and enigmatic proteins in the phloem sap. PP2 is translocated in the assimilate stream where its lectin activity or RNA-binding properties can exert effects over long distances.


Pssm-ID: 464128  Cd Length: 151  Bit Score: 154.29  E-value: 1.09e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15217722    13 MIYARDLSIAWSDKDEYWSWLPLrydiSSEKLVDAAVLEAVCWLDVNGKFDTRELTLETTYEVVYVVKLEDTASGWNI-P 91
Cdd:pfam14299   5 MLSARALSITWGDDPRYWRWIPL----PESRFSEVAELLQVCWLEIRGKIDTRMLSPGTTYSAYFVFKLGDSSYGWDDvP 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15217722    92 VNLKLTLPDGKKR------PQERsmclkehiGKRWIDISAGEFVTSPDNA-GEISFSMYETKSCCWKRGLFVKCVEIRP 163
Cdd:pfam14299  81 VEFSVSVGSSSKRfvclrrPKER--------EDGWMEIELGEFVVNEGGEdGEVEFSLYEVKGGHWKGGLIVEGIEIRP 151
 
Name Accession Description Interval E-value
PP2 pfam14299
Phloem protein 2; Phloem protein 2 (PP2) is one of the most abundant and enigmatic proteins in ...
 13-163 1.09e-48

Phloem protein 2; Phloem protein 2 (PP2) is one of the most abundant and enigmatic proteins in the phloem sap. PP2 is translocated in the assimilate stream where its lectin activity or RNA-binding properties can exert effects over long distances.


Pssm-ID: 464128  Cd Length: 151  Bit Score: 154.29  E-value: 1.09e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15217722    13 MIYARDLSIAWSDKDEYWSWLPLrydiSSEKLVDAAVLEAVCWLDVNGKFDTRELTLETTYEVVYVVKLEDTASGWNI-P 91
Cdd:pfam14299   5 MLSARALSITWGDDPRYWRWIPL----PESRFSEVAELLQVCWLEIRGKIDTRMLSPGTTYSAYFVFKLGDSSYGWDDvP 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15217722    92 VNLKLTLPDGKKR------PQERsmclkehiGKRWIDISAGEFVTSPDNA-GEISFSMYETKSCCWKRGLFVKCVEIRP 163
Cdd:pfam14299  81 VEFSVSVGSSSKRfvclrrPKER--------EDGWMEIELGEFVVNEGGEdGEVEFSLYEVKGGHWKGGLIVEGIEIRP 151
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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