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Conserved domains on  [gi|15218810|ref|NP_174202|]
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Ribosomal protein L34 [Arabidopsis thaliana]

Protein Classification

50S ribosomal protein L34( domain architecture ID 10000747)

50S ribosomal protein L34 is involved in the regulation of the polyamine biosynthetic pathway

Gene Ontology:  GO:0005840|GO:0003735|GO:0006412
PubMed:  17086193

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RpmH COG0230
Ribosomal protein L34 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L34 ...
 111-147 7.94e-09

Ribosomal protein L34 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L34 is part of the Pathway/BioSystem: Ribosome 50S subunit


:

Pssm-ID: 440000  Cd Length: 44  Bit Score: 48.55  E-value: 7.94e-09
                        10        20        30
                ....*....|....*....|....*....|....*..
gi 15218810 111 SRKSLARTHGFRRRMRTTSGRATIKRRRAKGRWNLCP 147
Cdd:COG0230   8 SKRKRKRTHGFRARMSTKNGRKVLKRRRAKGRKRLTV 44
 
Name Accession Description Interval E-value
RpmH COG0230
Ribosomal protein L34 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L34 ...
 111-147 7.94e-09

Ribosomal protein L34 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L34 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440000  Cd Length: 44  Bit Score: 48.55  E-value: 7.94e-09
                        10        20        30
                ....*....|....*....|....*....|....*..
gi 15218810 111 SRKSLARTHGFRRRMRTTSGRATIKRRRAKGRWNLCP 147
Cdd:COG0230   8 SKRKRKRTHGFRARMSTKNGRKVLKRRRAKGRKRLTV 44
Ribosomal_L34 pfam00468
Ribosomal protein L34;
111-146 3.46e-08

Ribosomal protein L34;


Pssm-ID: 425699  Cd Length: 42  Bit Score: 47.00  E-value: 3.46e-08
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 15218810   111 SRKSLARTHGFRRRMRTTSGRATIKRRRAKGRWNLC 146
Cdd:pfam00468   7 SNRKRKRKHGFRARMRTKNGRKVLKRRRAKGRKRLT 42
rpmH_bact TIGR01030
ribosomal protein L34, bacterial type; This model describes the bacterial protein L34 and its ...
 111-145 4.47e-04

ribosomal protein L34, bacterial type; This model describes the bacterial protein L34 and its equivalents in organelles. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 130102  Cd Length: 44  Bit Score: 36.34  E-value: 4.47e-04
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 15218810   111 SRKSLARTHGFRRRMRTTSGRATIKRRRAKGRWNL 145
Cdd:TIGR01030   8 SNLKRKRTHGFRARMATKNGRKVLRRRRAKGRHKL 42
 
Name Accession Description Interval E-value
RpmH COG0230
Ribosomal protein L34 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L34 ...
 111-147 7.94e-09

Ribosomal protein L34 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L34 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440000  Cd Length: 44  Bit Score: 48.55  E-value: 7.94e-09
                        10        20        30
                ....*....|....*....|....*....|....*..
gi 15218810 111 SRKSLARTHGFRRRMRTTSGRATIKRRRAKGRWNLCP 147
Cdd:COG0230   8 SKRKRKRTHGFRARMSTKNGRKVLKRRRAKGRKRLTV 44
Ribosomal_L34 pfam00468
Ribosomal protein L34;
111-146 3.46e-08

Ribosomal protein L34;


Pssm-ID: 425699  Cd Length: 42  Bit Score: 47.00  E-value: 3.46e-08
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 15218810   111 SRKSLARTHGFRRRMRTTSGRATIKRRRAKGRWNLC 146
Cdd:pfam00468   7 SNRKRKRKHGFRARMRTKNGRKVLKRRRAKGRKRLT 42
rpmH_bact TIGR01030
ribosomal protein L34, bacterial type; This model describes the bacterial protein L34 and its ...
 111-145 4.47e-04

ribosomal protein L34, bacterial type; This model describes the bacterial protein L34 and its equivalents in organelles. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 130102  Cd Length: 44  Bit Score: 36.34  E-value: 4.47e-04
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 15218810   111 SRKSLARTHGFRRRMRTTSGRATIKRRRAKGRWNL 145
Cdd:TIGR01030   8 SNLKRKRTHGFRARMATKNGRKVLRRRRAKGRHKL 42
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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