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paramyosin [Arabidopsis thaliana]
Protein Classification
coiled-coil domain-containing protein ( domain architecture ID 1000095 )
coiled-coil domain-containing protein contains a region with alpha-helical coiled-coil sequence signatures that is being annotated by a variety of protein family models, not necessarily indicating family membership
List of domain hits
Name
Accession
Description
Interval
E-value
Smc super family
cl34174 Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
464-642
2.82e-07
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
COG1196 :Pssm-ID: 440809 [Multi-domain]
Cd Length: 983
Bit Score: 54.17
E-value: 2.82e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329777 464 LE NIVKASQL E IV EL QHL LE AS R E E TSS L RKQ L DTQTK E LNQRMRQIEE L KEKERIAN E NVEG L MTDIAAA EEE ITRWKV 543
Cdd:COG1196 251 LE AELEELEA E LA EL EAE LE EL R L E LEE L ELE L EEAQA E EYELLAELAR L EQDIARLE E RRRE L EERLEEL EEE LAELEE 330
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329777 544 AA E QEAAAGGAV E Q dfts Q L YVLK EELEEA KQAII E S E KK L KFK E ETA A A A MGARDAAERS L RL A DNR A TK L RERIQ EL N 623
Cdd:COG1196 331 EL E ELEEELEEL E E ---- E L EEAE EELEEA EAELA E A E EA L LEA E AEL A E A EEELEELAEE L LE A LRA A AE L AAQLE EL E 406
170
....*....|....*....
gi 22329777 624 RKV E E L ETHRDMNTSNRAR 642
Cdd:COG1196 407 EAE E A L LERLERLEEELEE 425
SMC_prok_B super family
cl37069 chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
36-634
1.10e-06
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
TIGR02168 :Pssm-ID: 274008 [Multi-domain]
Cd Length: 1179
Bit Score: 51.98
E-value: 1.10e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329777 36 R IT EL IA EL DREKKAREA AE SSKS EL QVSFNR L KALAV E AIKKRD E SKR E RD E AL KE KEN L T NE LENVNKG K DEMSKK L D 115
Cdd:TIGR02168 233 R LE EL RE EL EELQEELKE AE EELE EL TAELQE L EEKLE E LRLEVS E LEE E IE E LQ KE LYA L A NE ISRLEQQ K QILRER L A 312
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329777 116 EAL R SRDG L K A EI E N sshm L V S GIEKISGKVSSFKNFSNGGLPKSQKYTGLTSVAYGVIKRTNEIV EEL VR Q ID T TAKSR 195
Cdd:TIGR02168 313 NLE R QLEE L E A QL E E ---- L E S KLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRL EEL EE Q LE T LRSKV 388
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329777 196 NEARE Q MDQR N Y EI --- AIEVSQ LE SAISN L RL E VA E ----- KASIVDD L ERGVS E K E KRIA EL EKGN --- L E KVSL L EG 264
Cdd:TIGR02168 389 AQLEL Q IASL N N EI erl EARLER LE DRRER L QQ E IE E llkkl EEAELKE L QAELE E L E EELE EL QEEL erl E E ALEE L RE 468
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329777 265 E VV E LK Q LV D EYDGK L ktmelkmv AQ RPLLM D Q L NLVSRIHDQLY E V V RIVDG N S S EQ S D ---- LSE SFFMPQ -- E TEM E 338
Cdd:TIGR02168 469 E LE E AE Q AL D AAERE L -------- AQ LQARL D S L ERLQENLEGFS E G V KALLK N Q S GL S G ilgv LSE LISVDE gy E AAI E 540
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329777 339 ENIRAS L --------- A GMES I FE L TKVVS G KA ---------- QSLVEEKSHE LKN LNETV G L --- LVK EKEHIGTL L RS 396
Cdd:TIGR02168 541 AALGGR L qavvvenln A AKKA I AF L KQNEL G RV tflpldsikg TEIQGNDREI LKN IEGFL G V akd LVK FDPKLRKA L SY 620
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329777 397 A L SKRVIGEQPSQKR EL ------------------------- FQA A ENGLRDGGTDSKFAK L LKDGKVQDSRSDNTH dhs 451
Cdd:TIGR02168 621 L L GGVLVVDDLDNAL EL akklrpgyrivtldgdlvrpggvit GGS A KTNSSILERRREIEE L EEKIEELEEKIAELE --- 697
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329777 452 K EDN E IYSLAST LE NIVKASQL E IV EL QHLLE A S R EETSS L RKQLDTQTKELN Q RMRQIE EL KEKERIAN E NV E GLMTDI 531
Cdd:TIGR02168 698 K ALA E LRKELEE LE EELEQLRK E LE EL SRQIS A L R KDLAR L EAEVEQLEERIA Q LSKELT EL EAEIEELE E RL E EAEEEL 777
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329777 532 A A AE E EI trwkvaaeqea AAGG A VEQDFTSQ L YV L K E E L E E AKQAIIESEKKLKFKE E TAAAAMGARD A A ER S L RLADNR 611
Cdd:TIGR02168 778 A E AE A EI ----------- EELE A QIEQLKEE L KA L R E A L D E LRAELTLLNEEAANLR E RLESLERRIA A T ER R L EDLEEQ 846
650 660
....*....|....*....|...
gi 22329777 612 ATK L R E R I QE L NRKV EELE THRD 634
Cdd:TIGR02168 847 IEE L S E D I ES L AAEI EELE ELIE 869
Name
Accession
Description
Interval
E-value
Smc
COG1196 Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
464-642
2.82e-07
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain]
Cd Length: 983
Bit Score: 54.17
E-value: 2.82e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329777 464 LE NIVKASQL E IV EL QHL LE AS R E E TSS L RKQ L DTQTK E LNQRMRQIEE L KEKERIAN E NVEG L MTDIAAA EEE ITRWKV 543
Cdd:COG1196 251 LE AELEELEA E LA EL EAE LE EL R L E LEE L ELE L EEAQA E EYELLAELAR L EQDIARLE E RRRE L EERLEEL EEE LAELEE 330
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329777 544 AA E QEAAAGGAV E Q dfts Q L YVLK EELEEA KQAII E S E KK L KFK E ETA A A A MGARDAAERS L RL A DNR A TK L RERIQ EL N 623
Cdd:COG1196 331 EL E ELEEELEEL E E ---- E L EEAE EELEEA EAELA E A E EA L LEA E AEL A E A EEELEELAEE L LE A LRA A AE L AAQLE EL E 406
170
....*....|....*....
gi 22329777 624 RKV E E L ETHRDMNTSNRAR 642
Cdd:COG1196 407 EAE E A L LERLERLEEELEE 425
SMC_prok_B
TIGR02168 chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
36-634
1.10e-06
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain]
Cd Length: 1179
Bit Score: 51.98
E-value: 1.10e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329777 36 R IT EL IA EL DREKKAREA AE SSKS EL QVSFNR L KALAV E AIKKRD E SKR E RD E AL KE KEN L T NE LENVNKG K DEMSKK L D 115
Cdd:TIGR02168 233 R LE EL RE EL EELQEELKE AE EELE EL TAELQE L EEKLE E LRLEVS E LEE E IE E LQ KE LYA L A NE ISRLEQQ K QILRER L A 312
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329777 116 EAL R SRDG L K A EI E N sshm L V S GIEKISGKVSSFKNFSNGGLPKSQKYTGLTSVAYGVIKRTNEIV EEL VR Q ID T TAKSR 195
Cdd:TIGR02168 313 NLE R QLEE L E A QL E E ---- L E S KLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRL EEL EE Q LE T LRSKV 388
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329777 196 NEARE Q MDQR N Y EI --- AIEVSQ LE SAISN L RL E VA E ----- KASIVDD L ERGVS E K E KRIA EL EKGN --- L E KVSL L EG 264
Cdd:TIGR02168 389 AQLEL Q IASL N N EI erl EARLER LE DRRER L QQ E IE E llkkl EEAELKE L QAELE E L E EELE EL QEEL erl E E ALEE L RE 468
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329777 265 E VV E LK Q LV D EYDGK L ktmelkmv AQ RPLLM D Q L NLVSRIHDQLY E V V RIVDG N S S EQ S D ---- LSE SFFMPQ -- E TEM E 338
Cdd:TIGR02168 469 E LE E AE Q AL D AAERE L -------- AQ LQARL D S L ERLQENLEGFS E G V KALLK N Q S GL S G ilgv LSE LISVDE gy E AAI E 540
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329777 339 ENIRAS L --------- A GMES I FE L TKVVS G KA ---------- QSLVEEKSHE LKN LNETV G L --- LVK EKEHIGTL L RS 396
Cdd:TIGR02168 541 AALGGR L qavvvenln A AKKA I AF L KQNEL G RV tflpldsikg TEIQGNDREI LKN IEGFL G V akd LVK FDPKLRKA L SY 620
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329777 397 A L SKRVIGEQPSQKR EL ------------------------- FQA A ENGLRDGGTDSKFAK L LKDGKVQDSRSDNTH dhs 451
Cdd:TIGR02168 621 L L GGVLVVDDLDNAL EL akklrpgyrivtldgdlvrpggvit GGS A KTNSSILERRREIEE L EEKIEELEEKIAELE --- 697
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329777 452 K EDN E IYSLAST LE NIVKASQL E IV EL QHLLE A S R EETSS L RKQLDTQTKELN Q RMRQIE EL KEKERIAN E NV E GLMTDI 531
Cdd:TIGR02168 698 K ALA E LRKELEE LE EELEQLRK E LE EL SRQIS A L R KDLAR L EAEVEQLEERIA Q LSKELT EL EAEIEELE E RL E EAEEEL 777
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329777 532 A A AE E EI trwkvaaeqea AAGG A VEQDFTSQ L YV L K E E L E E AKQAIIESEKKLKFKE E TAAAAMGARD A A ER S L RLADNR 611
Cdd:TIGR02168 778 A E AE A EI ----------- EELE A QIEQLKEE L KA L R E A L D E LRAELTLLNEEAANLR E RLESLERRIA A T ER R L EDLEEQ 846
650 660
....*....|....*....|...
gi 22329777 612 ATK L R E R I QE L NRKV EELE THRD 634
Cdd:TIGR02168 847 IEE L S E D I ES L AAEI EELE ELIE 869
DUF3584
pfam12128 Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ...
31-636
6.73e-05
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain]
Cd Length: 1191
Bit Score: 46.37
E-value: 6.73e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329777 31 EASDERITELIAE L DREKKAREAA E SSKSEL Q VSFN - RLKA L AVEAIKKR D ES K RE RDE ALK E ---- KENLTNELENVNK 105
Cdd:pfam12128 247 QQEFNTLESAELR L SHLHFGYKSD E TLIASR Q EERQ e TSAE L NQLLRTLD D QW K EK RDE LNG E lsaa DAAVAKDRSELEA 326
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329777 106 GK D EMSKK LD EALRSR ------- DGLKA E I EN SSHM L VSGIE K ISGKVSSFKNF sngglp K S QKYTGLTSVAY G VIKRTN 178
Cdd:pfam12128 327 LE D QHGAF LD ADIETA aadqeql PSWQS E L EN LEER L KALTG K HQDVTAKYNRR ------ R S KIKEQNNRDIA G IKDKLA 400
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329777 179 E I V E ELV RQ I ---- D TTAKSRN E A REQ MDQRNY E IAI E VSQ L E S AISN L R L EVAE --- KASIVDD LE RGVSEK E KRIA E L 251
Cdd:pfam12128 401 K I R E ARD RQ L avae D DLQALES E L REQ LEAGKL E FNE E EYR L K S RLGE L K L RLNQ ata TPELLLQ LE NFDERI E RARE E Q 480
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329777 252 E KG N l EK V SL L EG E VVELKQLV D EYDGK L KTMELKMVAQRPL L MDQLNLVSRIHDQ L YEVV R ------------------ 313
Cdd:pfam12128 481 E AA N - AE V ER L QS E LRQARKRR D QASEA L RQASRRLEERQSA L DELELQLFPQAGT L LHFL R keapdweqsigkvispel 559
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329777 314 --------- IV DG NSSEQSD L S ------ ESFFM P QETEM EE NI R AS L AGM E SIF eltkvvs GK A QSLVEEKSHE L KNL N E 378
Cdd:pfam12128 560 lhrtdldpe VW DG SVGGELN L Y gvkldl KRIDV P EWAAS EE EL R ER L DKA E EAL ------- QS A REKQAAAEEQ L VQA N G 632
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329777 379 TVGLLVK E KEHIG T L L RS A LS -- K R VIG E QP S Q K RELFQ A AENGLRDGGT ds KFAK L LKDG K V qdsrsd NTHD H SKEDN E 456
Cdd:pfam12128 633 ELEKASR E ETFAR T A L KN A RL dl R R LFD E KQ S E K DKKNK A LAERKDSANE -- RLNS L EAQL K Q ------ LDKK H QAWLE E 704
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329777 457 IYSLASTLENIVK A SQLEIV - E L QHL L EASREETSSL R KQLDTQT K E L NQRMRQ ie E L KEKE r IANENVEG L MTD I AAA E 535
Cdd:pfam12128 705 QKEQKREARTEKQ A YWQVVE g A L DAQ L ALLKAAIAAR R SGAKAEL K A L ETWYKR -- D L ASLG - VDPDVIAK L KRE I RTL E 781
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329777 536 EE I T R WK V AAEQEAAAGGAVEQDFTSQLYV L KEE L EEAKQ AI I E SEKK L KFKEETAAAAMGARDAAERSLRLADN R ATKL 615
Cdd:pfam12128 782 RK I E R IA V RRQEVLRYFDWYQETWLQRRPR L ATQ L SNIER AI S E LQQQ L ARLIADTKLRRAKLEMERKASEKQQV R LSEN 861
650 660
....*....|....*....|.
gi 22329777 616 RERIQELNR K VEE L ETHRDMN 636
Cdd:pfam12128 862 LRGLRCEMS K LAT L KEDANSE 882
EnvC
COG4942 Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
49-253
8.08e-05
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain]
Cd Length: 377
Bit Score: 45.53
E-value: 8.08e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329777 49 K A REA AE SSKSE LQ VSFNR L KALAVEAI K KRDESKRERDEALKEKEN L TNELENVNKGKDEMSKK L D E ALRSRDG L K AE I 128
Cdd:COG4942 20 D A AAE AE AELEQ LQ QEIAE L EKELAALK K EEKALLKQLAALERRIAA L ARRIRALEQELAALEAE L A E LEKEIAE L R AE L 99
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329777 129 E NSSHM L VSGIEKI -- S G KVSSFKNFSNGGLP k SQKYTG L TSVA Y g VIKRTN E IV EEL VRQIDTT A KS R N E AREQMDQRN 206
Cdd:COG4942 100 E AQKEE L AELLRAL yr L G RQPPLALLLSPEDF - LDAVRR L QYLK Y - LAPARR E QA EEL RADLAEL A AL R A E LEAERAELE 177
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 22329777 207 YEI A ievs Q LE SAISN L RLEV AE KASIVDD LE RGVS E KEKRI AEL EK 253
Cdd:COG4942 178 ALL A ---- E LE EERAA L EALK AE RQKLLAR LE KELA E LAAEL AEL QQ 220
DUF5401
pfam17380 Family of unknown function (DUF5401); This is a family of unknown function found in ...
469-628
1.39e-04
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain]
Cd Length: 722
Bit Score: 45.11
E-value: 1.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329777 469 KAS Q LE I VELQHLL E AS R E E TSSL R KQLDTQTK E ln Q R M R QI E ELKEK E RIANEN VE G L MTD iaaa EEE IT R W K VAA E Q E 548
Cdd:pfam17380 409 EER Q RK I QQQKVEM E QI R A E QEEA R QREVRRLE E -- E R A R EM E RVRLE E QERQQQ VE R L RQQ ---- EEE RK R K K LEL E K E 482
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329777 549 AAAGGAV E QD fts QLYV L KE ELEE A KQA I IE S E K K L K FK E ETAAAAMG A RDAA ER SLRLADN R ATKL ---- R E RIQE LN R 624
Cdd:pfam17380 483 KRDRKRA E EQ --- RRKI L EK ELEE R KQA M IE E E R K R K LL E KEMEERQK A IYEE ER RREAEEE R RKQQ emee R R RIQE QM R 559
....
gi 22329777 625 K VE E 628
Cdd:pfam17380 560 K AT E 563
Name
Accession
Description
Interval
E-value
Smc
COG1196 Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
464-642
2.82e-07
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain]
Cd Length: 983
Bit Score: 54.17
E-value: 2.82e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329777 464 LE NIVKASQL E IV EL QHL LE AS R E E TSS L RKQ L DTQTK E LNQRMRQIEE L KEKERIAN E NVEG L MTDIAAA EEE ITRWKV 543
Cdd:COG1196 251 LE AELEELEA E LA EL EAE LE EL R L E LEE L ELE L EEAQA E EYELLAELAR L EQDIARLE E RRRE L EERLEEL EEE LAELEE 330
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329777 544 AA E QEAAAGGAV E Q dfts Q L YVLK EELEEA KQAII E S E KK L KFK E ETA A A A MGARDAAERS L RL A DNR A TK L RERIQ EL N 623
Cdd:COG1196 331 EL E ELEEELEEL E E ---- E L EEAE EELEEA EAELA E A E EA L LEA E AEL A E A EEELEELAEE L LE A LRA A AE L AAQLE EL E 406
170
....*....|....*....
gi 22329777 624 RKV E E L ETHRDMNTSNRAR 642
Cdd:COG1196 407 EAE E A L LERLERLEEELEE 425
Smc
COG1196 Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
29-577
8.50e-07
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain]
Cd Length: 983
Bit Score: 52.63
E-value: 8.50e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329777 29 RE E ASDERIT EL I AEL DREKKAR E AAESSKS EL QVSFNRLK A LAV E AIKKRDESKRERDEALKEKEN L TNE LE NVNKGKD 108
Cdd:COG1196 247 EL E ELEAELE EL E AEL AELEAEL E ELRLELE EL ELELEEAQ A EEY E LLAELARLEQDIARLEERRRE L EER LE ELEEELA 326
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329777 109 E MSKK L D E ALRSRDG L KA E I E NSSHM L VSGIEKISG kvssfknfsngglp KSQKYTGLTSVAYGVIKRTN E IV EEL VRQI 188
Cdd:COG1196 327 E LEEE L E E LEEELEE L EE E L E EAEEE L EEAEAELAE -------------- AEEALLEAEAELAEAEEELE E LA EEL LEAL 392
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329777 189 DTT A KSRNE a R E QMDQRNYEIAIEVSQ LE SAISN L RLEV AE KASIVDDL E RGVS E KEKRI AELE kgnl E KVSL L EGEVV E 268
Cdd:COG1196 393 RAA A ELAAQ - L E ELEEAEEALLERLER LE EELEE L EEAL AE LEEEEEEE E EALE E AAEEE AELE ---- E EEEA L LELLA E 467
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329777 269 L KQLVDEYDGK L KTMELKMVAQRPL L MDQ L NLVSRIHDQ L YE V -- VRIVD G NSSEQSDLSESFFMPQET E MEENIRASL A 346
Cdd:COG1196 468 L LEEAALLEAA L AELLEELAEAAAR L LLL L EAEADYEGF L EG V ka ALLLA G LRGLAGAVAVLIGVEAAY E AALEAALAA A 547
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329777 347 GMESIF E LTK V VSGKAQS L VEE K SHELKN L NETVGLLVKEKEHIGTLLRSALSKRVIGEQPSQKRELFQAAENG L R dg G T 426
Cdd:COG1196 548 LQNIVV E DDE V AAAAIEY L KAA K AGRATF L PLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDT L L -- G R 625
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329777 427 DSKF A K L LKDGKVQDSRSDNTHDHSK E DNEIYSLA S TLENIVKASQLEIV E LQHL LE ASR E ETSSLRKQ L DTQTKELNQR 506
Cdd:COG1196 626 TLVA A R L EAALRRAVTLAGRLREVTL E GEGGSAGG S LTGGSRRELLAALL E AEAE LE ELA E RLAEEELE L EEALLAEEEE 705
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 22329777 507 M R QIE E LK E KERIANENV E G L MTDIA A AE EE ITRWKVAA E QEAAAGGAV E QDFTSQ L YV L KE ELE EAKQA I 577
Cdd:COG1196 706 E R ELA E AE E ERLEEELEE E A L EEQLE A ER EE LLEELLEE E ELLEEEALE E LPEPPD L EE L ER ELE RLERE I 776
SMC_prok_B
TIGR02168 chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
36-634
1.10e-06
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain]
Cd Length: 1179
Bit Score: 51.98
E-value: 1.10e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329777 36 R IT EL IA EL DREKKAREA AE SSKS EL QVSFNR L KALAV E AIKKRD E SKR E RD E AL KE KEN L T NE LENVNKG K DEMSKK L D 115
Cdd:TIGR02168 233 R LE EL RE EL EELQEELKE AE EELE EL TAELQE L EEKLE E LRLEVS E LEE E IE E LQ KE LYA L A NE ISRLEQQ K QILRER L A 312
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329777 116 EAL R SRDG L K A EI E N sshm L V S GIEKISGKVSSFKNFSNGGLPKSQKYTGLTSVAYGVIKRTNEIV EEL VR Q ID T TAKSR 195
Cdd:TIGR02168 313 NLE R QLEE L E A QL E E ---- L E S KLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRL EEL EE Q LE T LRSKV 388
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329777 196 NEARE Q MDQR N Y EI --- AIEVSQ LE SAISN L RL E VA E ----- KASIVDD L ERGVS E K E KRIA EL EKGN --- L E KVSL L EG 264
Cdd:TIGR02168 389 AQLEL Q IASL N N EI erl EARLER LE DRRER L QQ E IE E llkkl EEAELKE L QAELE E L E EELE EL QEEL erl E E ALEE L RE 468
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329777 265 E VV E LK Q LV D EYDGK L ktmelkmv AQ RPLLM D Q L NLVSRIHDQLY E V V RIVDG N S S EQ S D ---- LSE SFFMPQ -- E TEM E 338
Cdd:TIGR02168 469 E LE E AE Q AL D AAERE L -------- AQ LQARL D S L ERLQENLEGFS E G V KALLK N Q S GL S G ilgv LSE LISVDE gy E AAI E 540
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329777 339 ENIRAS L --------- A GMES I FE L TKVVS G KA ---------- QSLVEEKSHE LKN LNETV G L --- LVK EKEHIGTL L RS 396
Cdd:TIGR02168 541 AALGGR L qavvvenln A AKKA I AF L KQNEL G RV tflpldsikg TEIQGNDREI LKN IEGFL G V akd LVK FDPKLRKA L SY 620
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329777 397 A L SKRVIGEQPSQKR EL ------------------------- FQA A ENGLRDGGTDSKFAK L LKDGKVQDSRSDNTH dhs 451
Cdd:TIGR02168 621 L L GGVLVVDDLDNAL EL akklrpgyrivtldgdlvrpggvit GGS A KTNSSILERRREIEE L EEKIEELEEKIAELE --- 697
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329777 452 K EDN E IYSLAST LE NIVKASQL E IV EL QHLLE A S R EETSS L RKQLDTQTKELN Q RMRQIE EL KEKERIAN E NV E GLMTDI 531
Cdd:TIGR02168 698 K ALA E LRKELEE LE EELEQLRK E LE EL SRQIS A L R KDLAR L EAEVEQLEERIA Q LSKELT EL EAEIEELE E RL E EAEEEL 777
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329777 532 A A AE E EI trwkvaaeqea AAGG A VEQDFTSQ L YV L K E E L E E AKQAIIESEKKLKFKE E TAAAAMGARD A A ER S L RLADNR 611
Cdd:TIGR02168 778 A E AE A EI ----------- EELE A QIEQLKEE L KA L R E A L D E LRAELTLLNEEAANLR E RLESLERRIA A T ER R L EDLEEQ 846
650 660
....*....|....*....|...
gi 22329777 612 ATK L R E R I QE L NRKV EELE THRD 634
Cdd:TIGR02168 847 IEE L S E D I ES L AAEI EELE ELIE 869
SMC_prok_B
TIGR02168 chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
29-632
3.39e-06
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain]
Cd Length: 1179
Bit Score: 50.44
E-value: 3.39e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329777 29 REEASD ER ITE L IAE L DREKKAR E AA ES SKS EL QVSFNR L KALAV E AIKKRDESKR E RD E ALK E K E N L TNE LE NVNKGKD 108
Cdd:TIGR02168 303 QKQILR ER LAN L ERQ L EELEAQL E EL ES KLD EL AEELAE L EEKLE E LKEELESLEA E LE E LEA E L E E L ESR LE ELEEQLE 382
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329777 109 EMSK K LDEALRSRDG L KA EIE N sshm L VSGI E KISGKVSSFKNFSNGG L P K SQK ytgltsvay GVI K RTNEIV EEL VRQI 188
Cdd:TIGR02168 383 TLRS K VAQLELQIAS L NN EIE R ---- L EARL E RLEDRRERLQQEIEEL L K K LEE --------- AEL K ELQAEL EEL EEEL 449
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329777 189 DTTA ksrn E AR E QMDQRNY E IAI E VSQL E S A ISNLRL E V A EKASIV D D LER GVSEK E KR --- IAE L E K g N LEKV S LLE G E 265
Cdd:TIGR02168 450 EELQ ---- E EL E RLEEALE E LRE E LEEA E Q A LDAAER E L A QLQARL D S LER LQENL E GF seg VKA L L K - N QSGL S GIL G V 524
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329777 266 VV EL KQLVDE Y D ---------------------------------- G KLKTME L KMVAQRPLLMDQLNLVSR I HDQ L YEV 311
Cdd:TIGR02168 525 LS EL ISVDEG Y E aaieaalggrlqavvvenlnaakkaiaflkqnel G RVTFLP L DSIKGTEIQGNDREILKN I EGF L GVA 604
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329777 312 VRI V DGNSSEQ --- S D L SESFFMPQETEMEENIRAS L AGMES I FE L TKVV ---------- S G K AQ S LVE E KSH E LKN L N E 378
Cdd:TIGR02168 605 KDL V KFDPKLR kal S Y L LGGVLVVDDLDNALELAKK L RPGYR I VT L DGDL vrpggvitgg S A K TN S SIL E RRR E IEE L E E 684
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329777 379 TVGL L v K EK EHIGTLLRSA L S K RV -- IG E QPS Q K R ELFQAAENGLRDGGT D SKFAKL l KDGKVQDSRSDNTHDHSKEDN E 456
Cdd:TIGR02168 685 KIEE L - E EK IAELEKALAE L R K EL ee LE E ELE Q L R KELEELSRQISALRK D LARLEA - EVEQLEERIAQLSKELTELEA E 762
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329777 457 I YS L AST LE NI --- VKASQL EI V EL QHLL E ASR EE TSS LR KQ LD TQTK EL N qrmrqie E L K E KERIAN E NV E G L MTD IAA 533
Cdd:TIGR02168 763 I EE L EER LE EA eee LAEAEA EI E EL EAQI E QLK EE LKA LR EA LD ELRA EL T ------- L L N E EAANLR E RL E S L ERR IAA 835
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329777 534 A E EEITRWKVAA E QEAAAGGAVEQDFTS qlyv L K E EL EE AKQAIIESEKKLKFK EE TA A AAMGARDAAERS LR LADNRAT 613
Cdd:TIGR02168 836 T E RRLEDLEEQI E ELSEDIESLAAEIEE ---- L E E LI EE LESELEALLNERASL EE AL A LLRSELEELSEE LR ELESKRS 911
650
....*....|....*....
gi 22329777 614 K LR ERIQ EL NR K VEE LE TH 632
Cdd:TIGR02168 912 E LR RELE EL RE K LAQ LE LR 930
Smc
COG1196 Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
464-644
4.13e-06
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain]
Cd Length: 983
Bit Score: 50.32
E-value: 4.13e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329777 464 LE NIVKASQL E IV EL QHL LE ASRE E TSS L RKQ L DTQTK EL NQRMRQI EE LKEK E RIANENVEG L MT DIA AA EE EITRWKV 543
Cdd:COG1196 237 LE AELEELEA E LE EL EAE LE ELEA E LAE L EAE L EELRL EL EELELEL EE AQAE E YELLAELAR L EQ DIA RL EE RRRELEE 316
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329777 544 AA E QEAAAGGAV E Q --- DFTSQ L YV L K EELEEA KQAII E S E KK L KFK EE TAAA A MGARDA AE RS L RLADNRATKLRERIQ 620
Cdd:COG1196 317 RL E ELEEELAEL E E ele ELEEE L EE L E EELEEA EEELE E A E AE L AEA EE ALLE A EAELAE AE EE L EELAEELLEALRAAA 396
170 180
....*....|....*....|....
gi 22329777 621 EL NRKV EELE THRDMNTSNRA R YA 644
Cdd:COG1196 397 EL AAQL EELE EAEEALLERLE R LE 420
DUF3584
pfam12128 Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ...
31-636
6.73e-05
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain]
Cd Length: 1191
Bit Score: 46.37
E-value: 6.73e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329777 31 EASDERITELIAE L DREKKAREAA E SSKSEL Q VSFN - RLKA L AVEAIKKR D ES K RE RDE ALK E ---- KENLTNELENVNK 105
Cdd:pfam12128 247 QQEFNTLESAELR L SHLHFGYKSD E TLIASR Q EERQ e TSAE L NQLLRTLD D QW K EK RDE LNG E lsaa DAAVAKDRSELEA 326
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329777 106 GK D EMSKK LD EALRSR ------- DGLKA E I EN SSHM L VSGIE K ISGKVSSFKNF sngglp K S QKYTGLTSVAY G VIKRTN 178
Cdd:pfam12128 327 LE D QHGAF LD ADIETA aadqeql PSWQS E L EN LEER L KALTG K HQDVTAKYNRR ------ R S KIKEQNNRDIA G IKDKLA 400
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329777 179 E I V E ELV RQ I ---- D TTAKSRN E A REQ MDQRNY E IAI E VSQ L E S AISN L R L EVAE --- KASIVDD LE RGVSEK E KRIA E L 251
Cdd:pfam12128 401 K I R E ARD RQ L avae D DLQALES E L REQ LEAGKL E FNE E EYR L K S RLGE L K L RLNQ ata TPELLLQ LE NFDERI E RARE E Q 480
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329777 252 E KG N l EK V SL L EG E VVELKQLV D EYDGK L KTMELKMVAQRPL L MDQLNLVSRIHDQ L YEVV R ------------------ 313
Cdd:pfam12128 481 E AA N - AE V ER L QS E LRQARKRR D QASEA L RQASRRLEERQSA L DELELQLFPQAGT L LHFL R keapdweqsigkvispel 559
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329777 314 --------- IV DG NSSEQSD L S ------ ESFFM P QETEM EE NI R AS L AGM E SIF eltkvvs GK A QSLVEEKSHE L KNL N E 378
Cdd:pfam12128 560 lhrtdldpe VW DG SVGGELN L Y gvkldl KRIDV P EWAAS EE EL R ER L DKA E EAL ------- QS A REKQAAAEEQ L VQA N G 632
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329777 379 TVGLLVK E KEHIG T L L RS A LS -- K R VIG E QP S Q K RELFQ A AENGLRDGGT ds KFAK L LKDG K V qdsrsd NTHD H SKEDN E 456
Cdd:pfam12128 633 ELEKASR E ETFAR T A L KN A RL dl R R LFD E KQ S E K DKKNK A LAERKDSANE -- RLNS L EAQL K Q ------ LDKK H QAWLE E 704
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329777 457 IYSLASTLENIVK A SQLEIV - E L QHL L EASREETSSL R KQLDTQT K E L NQRMRQ ie E L KEKE r IANENVEG L MTD I AAA E 535
Cdd:pfam12128 705 QKEQKREARTEKQ A YWQVVE g A L DAQ L ALLKAAIAAR R SGAKAEL K A L ETWYKR -- D L ASLG - VDPDVIAK L KRE I RTL E 781
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329777 536 EE I T R WK V AAEQEAAAGGAVEQDFTSQLYV L KEE L EEAKQ AI I E SEKK L KFKEETAAAAMGARDAAERSLRLADN R ATKL 615
Cdd:pfam12128 782 RK I E R IA V RRQEVLRYFDWYQETWLQRRPR L ATQ L SNIER AI S E LQQQ L ARLIADTKLRRAKLEMERKASEKQQV R LSEN 861
650 660
....*....|....*....|.
gi 22329777 616 RERIQELNR K VEE L ETHRDMN 636
Cdd:pfam12128 862 LRGLRCEMS K LAT L KEDANSE 882
EnvC
COG4942 Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
49-253
8.08e-05
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain]
Cd Length: 377
Bit Score: 45.53
E-value: 8.08e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329777 49 K A REA AE SSKSE LQ VSFNR L KALAVEAI K KRDESKRERDEALKEKEN L TNELENVNKGKDEMSKK L D E ALRSRDG L K AE I 128
Cdd:COG4942 20 D A AAE AE AELEQ LQ QEIAE L EKELAALK K EEKALLKQLAALERRIAA L ARRIRALEQELAALEAE L A E LEKEIAE L R AE L 99
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329777 129 E NSSHM L VSGIEKI -- S G KVSSFKNFSNGGLP k SQKYTG L TSVA Y g VIKRTN E IV EEL VRQIDTT A KS R N E AREQMDQRN 206
Cdd:COG4942 100 E AQKEE L AELLRAL yr L G RQPPLALLLSPEDF - LDAVRR L QYLK Y - LAPARR E QA EEL RADLAEL A AL R A E LEAERAELE 177
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 22329777 207 YEI A ievs Q LE SAISN L RLEV AE KASIVDD LE RGVS E KEKRI AEL EK 253
Cdd:COG4942 178 ALL A ---- E LE EERAA L EALK AE RQKLLAR LE KELA E LAAEL AEL QQ 220
DUF5401
pfam17380 Family of unknown function (DUF5401); This is a family of unknown function found in ...
469-628
1.39e-04
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain]
Cd Length: 722
Bit Score: 45.11
E-value: 1.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329777 469 KAS Q LE I VELQHLL E AS R E E TSSL R KQLDTQTK E ln Q R M R QI E ELKEK E RIANEN VE G L MTD iaaa EEE IT R W K VAA E Q E 548
Cdd:pfam17380 409 EER Q RK I QQQKVEM E QI R A E QEEA R QREVRRLE E -- E R A R EM E RVRLE E QERQQQ VE R L RQQ ---- EEE RK R K K LEL E K E 482
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329777 549 AAAGGAV E QD fts QLYV L KE ELEE A KQA I IE S E K K L K FK E ETAAAAMG A RDAA ER SLRLADN R ATKL ---- R E RIQE LN R 624
Cdd:pfam17380 483 KRDRKRA E EQ --- RRKI L EK ELEE R KQA M IE E E R K R K LL E KEMEERQK A IYEE ER RREAEEE R RKQQ emee R R RIQE QM R 559
....
gi 22329777 625 K VE E 628
Cdd:pfam17380 560 K AT E 563
SMC_prok_B
TIGR02168 chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
28-287
4.04e-04
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain]
Cd Length: 1179
Bit Score: 43.89
E-value: 4.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329777 28 PREEASDERIT EL IA EL DREKKAR E AAESSKS EL QVSFNR L KALAVEAIKKRDESKRERDEAL KE KEN L TN E L E NVNKGK 107
Cdd:TIGR02168 691 EKIAELEKALA EL RK EL EELEEEL E QLRKELE EL SRQISA L RKDLARLEAEVEQLEERIAQLS KE LTE L EA E I E ELEERL 770
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329777 108 D E MSKK L D EA LRSRDG L K A E IE NSSHM L VSGI E KISGKVSSFKNFSNGGLPKSQKYTG L TSVA ygvikrtneiv EELV R Q 187
Cdd:TIGR02168 771 E E AEEE L A EA EAEIEE L E A Q IE QLKEE L KALR E ALDELRAELTLLNEEAANLRERLES L ERRI ----------- AATE R R 839
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329777 188 IDTTAKSRN E AR E QMD qrny EI A I E VSQ LE SA I SN L RL E VAEKASIVDD LE RGVSEKEKRIA EL EKGNL E kvsl LE GEVV 267
Cdd:TIGR02168 840 LEDLEEQIE E LS E DIE ---- SL A A E IEE LE EL I EE L ES E LEALLNERAS LE EALALLRSELE EL SEELR E ---- LE SKRS 911
250 260
....*....|....*....|
gi 22329777 268 EL KQLVD E YDG KL KTM EL KM 287
Cdd:TIGR02168 912 EL RRELE E LRE KL AQL EL RL 931
Smc
COG1196 Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
463-634
6.23e-04
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain]
Cd Length: 983
Bit Score: 43.00
E-value: 6.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329777 463 T L ENIVKASQ LE IV E L Q HLLEASRE E TSS L RKQLDTQTKELNQRMRQI EEL K E KERIAN E NV E G L MTDIAAA EEE ITRWK 542
Cdd:COG1196 271 E L RLELEELE LE LE E A Q AEEYELLA E LAR L EQDIARLEERRRELEERL EEL E E ELAELE E EL E E L EEELEEL EEE LEEAE 350
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329777 543 VAA E QEA A AGGAV E Q dfts Q L YVLKE EL E EA KQAII E SEKK L KFKEET AA AAMGARDAA E RSLRLADN R ATK L R E RIQ EL 622
Cdd:COG1196 351 EEL E EAE A ELAEA E E ---- A L LEAEA EL A EA EEELE E LAEE L LEALRA AA ELAAQLEEL E EAEEALLE R LER L E E ELE EL 426
170
....*....|..
gi 22329777 623 NRKVE ELE THRD 634
Cdd:COG1196 427 EEALA ELE EEEE 438
Smc
COG1196 Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
35-630
1.05e-03
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain]
Cd Length: 983
Bit Score: 42.23
E-value: 1.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329777 35 ER ITELIA EL D R E ---- KKAR E A AE SSK s EL QVSFNR L K A LA ve AIK K RD E SKR E RD E ALK E K E N L TN ELE NVNKGKD E M 110
Cdd:COG1196 189 ER LEDILG EL E R Q lepl ERQA E K AE RYR - EL KEELKE L E A EL -- LLL K LR E LEA E LE E LEA E L E E L EA ELE ELEAELA E L 265
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329777 111 SKK L D E ALRSRDG L KA E I E --- NSSHM L VSGIEKISGKVSSFKN fsngglpksqkytg LTSVAYGVIKRTN E IVE EL VRQ 187
Cdd:COG1196 266 EAE L E E LRLELEE L EL E L E eaq AEEYE L LAELARLEQDIARLEE -------------- RRRELEERLEELE E ELA EL EEE 331
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329777 188 IDTTAKSRN E AR E QMD qrny E IAI E VSQL E SAISNLRLEVA E KASIVDDL E RGVS E KEKRIA E LEKGNL E KVSL LE GEVV 267
Cdd:COG1196 332 LEELEEELE E LE E ELE ---- E AEE E LEEA E AELAEAEEALL E AEAELAEA E EELE E LAEELL E ALRAAA E LAAQ LE ELEE 407
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329777 268 ELKQ L VDEYDGKLKTM E LKMV A QRP L LMDQLNLVSRIHDQLY E VVRIVDGNSSEQSD L S E SFF - MPQETEMEENIRAS LA 346
Cdd:COG1196 408 AEEA L LERLERLEEEL E ELEE A LAE L EEEEEEEEEALEEAAE E EAELEEEEEALLEL L A E LLE e AALLEAALAELLEE LA 487
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329777 347 GMESIFE L TKVVSGKAQSLV E ----- EKSHE L KN L NET V GL L VKEKEHIGTL L RS AL SKRVIGEQPSQKRELFQ A A E NGL 421
Cdd:COG1196 488 EAAARLL L LLEAEADYEGFL E gvkaa LLLAG L RG L AGA V AV L IGVEAAYEAA L EA AL AAALQNIVVEDDEVAAA A I E YLK 567
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329777 422 RDGGTDSK F AK L L K DGKVQDSRSDNTHDHSKEDNEIYSLASTLENIVKASQLEIVELQH L LE A SR E ETSSLRKQ L DTQTK 501
Cdd:COG1196 568 AAKAGRAT F LP L D K IRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRT L VA A RL E AALRRAVT L AGRLR 647
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329777 502 E LNQRMRQIEELKEKERIANENVEGL mtd IAA AE E E ITRWKVAAEQ E AAAGGAVEQDFTSQLYV L K E EL EE AKQAII E S E 581
Cdd:COG1196 648 E VTLEGEGGSAGGSLTGGSRRELLAA --- LLE AE A E LEELAERLAE E ELELEEALLAEEEEERE L A E AE EE RLEEEL E E E 724
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*.
gi 22329777 582 KKLKFK E ETAAAAMGARDAA E RS L RLA ------- DNRATK L RERIQE L N R KV E E L E 630
Cdd:COG1196 725 ALEEQL E AEREELLEELLEE E EL L EEE aleelpe PPDLEE L ERELER L E R EI E A L G 780
Smc
COG1196 Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
469-634
1.90e-03
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain]
Cd Length: 983
Bit Score: 41.46
E-value: 1.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329777 469 KASQLEIV EL QHL L EASR EE TSS L RKQ L DTQTK EL NQRMRQI EE LKEKERI A N E NVEGLMTDI A A AEEE ITRWKVAAEQE 548
Cdd:COG1196 312 RELEERLE EL EEE L AELE EE LEE L EEE L EELEE EL EEAEEEL EE AEAELAE A E E ALLEAEAEL A E AEEE LEELAEELLEA 391
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329777 549 AA A GGAVEQDFTS --- QLYV L K E E LE EAKQAII E S E KK L KFK EE TAAAAMG A RDA A ERSLRLADNRATK L R E RIQ EL NRK 625
Cdd:COG1196 392 LR A AAELAAQLEE lee AEEA L L E R LE RLEEELE E L E EA L AEL EE EEEEEEE A LEE A AEEEAELEEEEEA L L E LLA EL LEE 471
....*....
gi 22329777 626 VEE LE THRD 634
Cdd:COG1196 472 AAL LE AALA 480
CwlO1
COG3883 Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ...
469-630
4.02e-03
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain]
Cd Length: 379
Bit Score: 40.20
E-value: 4.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329777 469 K A S Q L E IV ELQ HL LEA SRE E TSS L RKQ L DTQTK E L N QRMRQI E E L KEKERIANENVEGLMTD I AAAE EE ITRWKV A AEQE 548
Cdd:COG3883 19 Q A K Q K E LS ELQ AE LEA AQA E LDA L QAE L EELNE E Y N ELQAEL E A L QAEIDKLQAEIAEAEAE I EERR EE LGERAR A LYRS 98
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329777 549 AAAGGAVE -------- Q DF TSQ L YV L ------- KEE LEE A K QAII E S E K K LKFK E ETA A AAMGARDAA E RSLRLADNRAT 613
Cdd:COG3883 99 GGSVSYLD vllgsesf S DF LDR L SA L skiadad ADL LEE L K ADKA E L E A K KAEL E AKL A ELEALKAEL E AAKAELEAQQA 178
170
....*....|....*..
gi 22329777 614 KLRERIQE L NRKVEEL E 630
Cdd:COG3883 179 EQEALLAQ L SAEEAAA E 195
EnvC
COG4942 Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
470-634
8.77e-03
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain]
Cd Length: 377
Bit Score: 38.98
E-value: 8.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329777 470 A SQLEIV E LQHL LE ASRE E TSS L R K Q L DTQT KE LNQRMR Q IEE L KEKERIANENVEG L MTDI AA A E E E ITR wkvaaeq EA 549
Cdd:COG4942 17 A QADAAA E AEAE LE QLQQ E IAE L E K E L AALK KE EKALLK Q LAA L ERRIAALARRIRA L EQEL AA L E A E LAE ------- LE 89
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329777 550 AAGGAVEQDFTS Q LYV L K E E L EEAKQAIIESEKK L KFKE E TAAA A MGARDAAERSLRLADNR A TK LR ERIQ EL NRKVE EL 629
Cdd:COG4942 90 KEIAELRAELEA Q KEE L A E L L RALYRLGRQPPLA L LLSP E DFLD A VRRLQYLKYLAPARREQ A EE LR ADLA EL AALRA EL 169
....*
gi 22329777 630 E TH R D 634
Cdd:COG4942 170 E AE R A 174
Blast search parameters
Data Source:
Precalculated data, version = cdd.v.3.21
Preset Options: Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
