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Conserved domains on  [gi|22329767|ref|NP_173822|]
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ARG1-like 1 [Arabidopsis thaliana]

Protein Classification

J domain-containing protein( domain architecture ID 13623537)

J domain-containing protein similar to Arabidopsis thaliana chaperone protein dnaJ 16 that plays a continuous role in plant development probably in the structural organization of compartments

CATH:  1.10.287.110
Gene Ontology:  GO:0006457
PubMed:  9585179|15170475|9644977|8016869|10542335|35729039
SCOP:  4000605

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DnaJ pfam00226
DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is ...
 20-82 8.19e-30

DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature.


:

Pssm-ID: 395170 [Multi-domain]  Cd Length: 63  Bit Score: 110.26  E-value: 8.19e-30
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 22329767    20 DPYEVLGVLRNSTDQEIKSAYRKLALKYHPDKTANDPVAADMFKEVTFSYNILSDPEKRRQFD 82
Cdd:pfam00226   1 DYYEILGVSPDASDEEIKKAYRKLALKYHPDKNPGDPEAEEKFKEINEAYEVLSDPEKRAIYD 63
PRK14284 super family cl36356
chaperone protein DnaJ; Provisional
 20-174 2.23e-18

chaperone protein DnaJ; Provisional


The actual alignment was detected with superfamily member PRK14284:

Pssm-ID: 237658 [Multi-domain]  Cd Length: 391  Bit Score: 86.44  E-value: 2.23e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329767   20 DPYEVLGVLRNSTDQEIKSAYRKLALKYHPDKTANDPVAADMFKEVTFSYNILSDPEKRRQFDSAGFEAVEAES------ 93
Cdd:PRK14284   2 DYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDGPFAGAggfgga 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329767   94 --QELELDLSS--------LGAVNTVFAALFSKLGvpiktsvsatileEALNGRvsVDPLVLGQAVSKKVEkqcahfyaV 163
Cdd:PRK14284  82 gmGNMEDALRTfmgafggeFGGGGSFFEGLFGGLG-------------EAFGMR--GGPAGARQGASKKVH--------I 138

                        170
                 ....*....|.
gi 22329767  164 TISEEEVSAGL 174
Cdd:PRK14284 139 TLSFEEAAKGV 149
ClpA super family cl33938
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ...
 293-361 3.38e-03

ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];


The actual alignment was detected with superfamily member COG0542:

Pssm-ID: 440308 [Multi-domain]  Cd Length: 836  Bit Score: 39.68  E-value: 3.38e-03
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 22329767 293 EKEDLrsVEAQILTKRAELAKFETEYREVLVQFTDMTSRYAQEMQSIDELLKQRNEIHSAYTTIPLMKR 361
Cdd:COG0542 426 EKEAL--KKEQDEASFERLAELRDELAELEEELEALKARWEAEKELIEEIQELKEELEQRYGKIPELEK 492
 
Name Accession Description Interval E-value
DnaJ pfam00226
DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is ...
 20-82 8.19e-30

DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature.


Pssm-ID: 395170 [Multi-domain]  Cd Length: 63  Bit Score: 110.26  E-value: 8.19e-30
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 22329767    20 DPYEVLGVLRNSTDQEIKSAYRKLALKYHPDKTANDPVAADMFKEVTFSYNILSDPEKRRQFD 82
Cdd:pfam00226   1 DYYEILGVSPDASDEEIKKAYRKLALKYHPDKNPGDPEAEEKFKEINEAYEVLSDPEKRAIYD 63
DnaJ COG0484
DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational ...
 20-97 1.61e-27

DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440252 [Multi-domain]  Cd Length: 139  Bit Score: 106.71  E-value: 1.61e-27
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 22329767  20 DPYEVLGVLRNSTDQEIKSAYRKLALKYHPDKTANDPVAADMFKEVTFSYNILSDPEKRRQFDSAGFEAVEAESQELE 97
Cdd:COG0484   1 DYYEILGVSRDASAEEIKKAYRKLAKKYHPDRNPGDPEAEEKFKEINEAYEVLSDPEKRAAYDRFGHAAELLLATELA 78
PRK10767 PRK10767
chaperone protein DnaJ; Provisional
 19-90 3.31e-27

chaperone protein DnaJ; Provisional


Pssm-ID: 236757 [Multi-domain]  Cd Length: 371  Bit Score: 111.77  E-value: 3.31e-27
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 22329767   19 RDPYEVLGVLRNSTDQEIKSAYRKLALKYHPDKTANDPVAADMFKEVTFSYNILSDPEKRRQFDSAGFEAVE 90
Cdd:PRK10767   4 RDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAAFE 75
DnaJ_bact TIGR02349
chaperone protein DnaJ; This model represents bacterial forms of DnaJ, part of the ...
 20-90 2.46e-24

chaperone protein DnaJ; This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.


Pssm-ID: 274090 [Multi-domain]  Cd Length: 354  Bit Score: 103.06  E-value: 2.46e-24
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 22329767    20 DPYEVLGVLRNSTDQEIKSAYRKLALKYHPDKTAnDPVAADMFKEVTFSYNILSDPEKRRQFDSAGFEAVE 90
Cdd:TIGR02349   1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNK-DKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAGFN 70
terminal_TopJ NF037946
terminal organelle assembly protein TopJ;
18-93 7.64e-23

terminal organelle assembly protein TopJ;


Pssm-ID: 468284 [Multi-domain]  Cd Length: 440  Bit Score: 100.28  E-value: 7.64e-23
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 22329767   18 RRDPYEVLGVLRNSTDQEIKSAYRKLALKYHPDKTaNDPVAADMFKEVTFSYNILSDPEKRRQFDSAGFEAVEAES 93
Cdd:NF037946   4 KRDYYEVLGVDRDADDQEIKKAFRKLAKKYHPDRN-KAPDAAEIFAEINEAYEVLSNPEKRANYDKYGHDGVDGEG 78
DnaJ smart00271
DnaJ molecular chaperone homology domain;
19-77 2.44e-21

DnaJ molecular chaperone homology domain;


Pssm-ID: 197617 [Multi-domain]  Cd Length: 60  Bit Score: 86.90  E-value: 2.44e-21
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329767     19 RDPYEVLGVLRNSTDQEIKSAYRKLALKYHPDK-TANDPVAADMFKEVTFSYNILSDPEK 77
Cdd:smart00271   1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKnPGDKEEAEEKFKEINEAYEVLSDPEK 60
DnaJ cd06257
DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and ...
 20-74 1.88e-20

DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.


Pssm-ID: 99751 [Multi-domain]  Cd Length: 55  Bit Score: 84.13  E-value: 1.88e-20
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*
gi 22329767  20 DPYEVLGVLRNSTDQEIKSAYRKLALKYHPDKTANDPVAADMFKEVTFSYNILSD 74
Cdd:cd06257   1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55
PRK14284 PRK14284
chaperone protein DnaJ; Provisional
 20-174 2.23e-18

chaperone protein DnaJ; Provisional


Pssm-ID: 237658 [Multi-domain]  Cd Length: 391  Bit Score: 86.44  E-value: 2.23e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329767   20 DPYEVLGVLRNSTDQEIKSAYRKLALKYHPDKTANDPVAADMFKEVTFSYNILSDPEKRRQFDSAGFEAVEAES------ 93
Cdd:PRK14284   2 DYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDGPFAGAggfgga 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329767   94 --QELELDLSS--------LGAVNTVFAALFSKLGvpiktsvsatileEALNGRvsVDPLVLGQAVSKKVEkqcahfyaV 163
Cdd:PRK14284  82 gmGNMEDALRTfmgafggeFGGGGSFFEGLFGGLG-------------EAFGMR--GGPAGARQGASKKVH--------I 138

                        170
                 ....*....|.
gi 22329767  164 TISEEEVSAGL 174
Cdd:PRK14284 139 TLSFEEAAKGV 149
ClpA COG0542
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ...
 293-361 3.38e-03

ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440308 [Multi-domain]  Cd Length: 836  Bit Score: 39.68  E-value: 3.38e-03
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 22329767 293 EKEDLrsVEAQILTKRAELAKFETEYREVLVQFTDMTSRYAQEMQSIDELLKQRNEIHSAYTTIPLMKR 361
Cdd:COG0542 426 EKEAL--KKEQDEASFERLAELRDELAELEEELEALKARWEAEKELIEEIQELKEELEQRYGKIPELEK 492
 
Name Accession Description Interval E-value
DnaJ pfam00226
DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is ...
 20-82 8.19e-30

DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature.


Pssm-ID: 395170 [Multi-domain]  Cd Length: 63  Bit Score: 110.26  E-value: 8.19e-30
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 22329767    20 DPYEVLGVLRNSTDQEIKSAYRKLALKYHPDKTANDPVAADMFKEVTFSYNILSDPEKRRQFD 82
Cdd:pfam00226   1 DYYEILGVSPDASDEEIKKAYRKLALKYHPDKNPGDPEAEEKFKEINEAYEVLSDPEKRAIYD 63
DnaJ COG0484
DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational ...
 20-97 1.61e-27

DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440252 [Multi-domain]  Cd Length: 139  Bit Score: 106.71  E-value: 1.61e-27
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 22329767  20 DPYEVLGVLRNSTDQEIKSAYRKLALKYHPDKTANDPVAADMFKEVTFSYNILSDPEKRRQFDSAGFEAVEAESQELE 97
Cdd:COG0484   1 DYYEILGVSRDASAEEIKKAYRKLAKKYHPDRNPGDPEAEEKFKEINEAYEVLSDPEKRAAYDRFGHAAELLLATELA 78
PRK10767 PRK10767
chaperone protein DnaJ; Provisional
 19-90 3.31e-27

chaperone protein DnaJ; Provisional


Pssm-ID: 236757 [Multi-domain]  Cd Length: 371  Bit Score: 111.77  E-value: 3.31e-27
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 22329767   19 RDPYEVLGVLRNSTDQEIKSAYRKLALKYHPDKTANDPVAADMFKEVTFSYNILSDPEKRRQFDSAGFEAVE 90
Cdd:PRK10767   4 RDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAAFE 75
DnaJ_bact TIGR02349
chaperone protein DnaJ; This model represents bacterial forms of DnaJ, part of the ...
 20-90 2.46e-24

chaperone protein DnaJ; This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.


Pssm-ID: 274090 [Multi-domain]  Cd Length: 354  Bit Score: 103.06  E-value: 2.46e-24
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 22329767    20 DPYEVLGVLRNSTDQEIKSAYRKLALKYHPDKTAnDPVAADMFKEVTFSYNILSDPEKRRQFDSAGFEAVE 90
Cdd:TIGR02349   1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNK-DKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAGFN 70
SEC63 COG5407
Preprotein translocase subunit Sec63 [Intracellular trafficking, secretion, and vesicular ...
 20-80 6.58e-24

Preprotein translocase subunit Sec63 [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 444165 [Multi-domain]  Cd Length: 61  Bit Score: 93.91  E-value: 6.58e-24
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 22329767  20 DPYEVLGVLRNSTDQEIKSAYRKLALKYHPDKTANDPVAADMFKEVTFSYNILSDPEKRRQ 80
Cdd:COG5407   1 DPYEVLGVAKTASADEIKKAYRKLAKKYHPDRNKGDPKAEERFKEINEAYELLSDAEKRAR 61
terminal_TopJ NF037946
terminal organelle assembly protein TopJ;
18-93 7.64e-23

terminal organelle assembly protein TopJ;


Pssm-ID: 468284 [Multi-domain]  Cd Length: 440  Bit Score: 100.28  E-value: 7.64e-23
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 22329767   18 RRDPYEVLGVLRNSTDQEIKSAYRKLALKYHPDKTaNDPVAADMFKEVTFSYNILSDPEKRRQFDSAGFEAVEAES 93
Cdd:NF037946   4 KRDYYEVLGVDRDADDQEIKKAFRKLAKKYHPDRN-KAPDAAEIFAEINEAYEVLSNPEKRANYDKYGHDGVDGEG 78
PRK14301 PRK14301
chaperone protein DnaJ; Provisional
 18-89 1.32e-22

chaperone protein DnaJ; Provisional


Pssm-ID: 237668 [Multi-domain]  Cd Length: 373  Bit Score: 98.66  E-value: 1.32e-22
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 22329767   18 RRDPYEVLGVLRNSTDQEIKSAYRKLALKYHPDKTANDPVAADMFKEVTFSYNILSDPEKRRQFDSAGFEAV 89
Cdd:PRK14301   3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAGV 74
PRK14277 PRK14277
chaperone protein DnaJ; Provisional
 18-90 2.03e-22

chaperone protein DnaJ; Provisional


Pssm-ID: 184599 [Multi-domain]  Cd Length: 386  Bit Score: 98.33  E-value: 2.03e-22
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 22329767   18 RRDPYEVLGVLRNSTDQEIKSAYRKLALKYHPDKTANDPVAADMFKEVTFSYNILSDPEKRRQFDSAGFEAVE 90
Cdd:PRK14277   4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGHAAFD 76
PRK14291 PRK14291
chaperone protein DnaJ; Provisional
 18-97 3.95e-22

chaperone protein DnaJ; Provisional


Pssm-ID: 237661 [Multi-domain]  Cd Length: 382  Bit Score: 97.53  E-value: 3.95e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329767   18 RRDPYEVLGVLRNSTDQEIKSAYRKLALKYHPDKTANdPVAADMFKEVTFSYNILSDPEKRR---QFDSAGFEAVEAESQ 94
Cdd:PRK14291   2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKN-PEAEEKFKEINEAYQVLSDPEKRKlydQFGHAAFSGSGQQQQ 80


                 ...
gi 22329767   95 ELE 97
Cdd:PRK14291  81 GQE 83
PRK14281 PRK14281
chaperone protein DnaJ; Provisional
 17-89 1.27e-21

chaperone protein DnaJ; Provisional


Pssm-ID: 237657 [Multi-domain]  Cd Length: 397  Bit Score: 96.03  E-value: 1.27e-21
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 22329767   17 LRRDPYEVLGVLRNSTDQEIKSAYRKLALKYHPDKTANDPVAADMFKEVTFSYNILSDPEKRRQFDSAGFEAV 89
Cdd:PRK14281   1 MKRDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAGV 73
PRK14298 PRK14298
chaperone protein DnaJ; Provisional
 18-141 1.61e-21

chaperone protein DnaJ; Provisional


Pssm-ID: 184612 [Multi-domain]  Cd Length: 377  Bit Score: 95.69  E-value: 1.61e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329767   18 RRDPYEVLGVLRNSTDQEIKSAYRKLALKYHPDKTaNDPVAADMFKEVTFSYNILSDPEKRRQFDSAGFEAVEAE-SQEL 96
Cdd:PRK14298   4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKN-KEPDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAGIDNQySAED 82

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 22329767   97 ELDLSSLGAVNTVFAALFS----------KLGVPIKTSVSATILEEALNGRVSVD 141
Cdd:PRK14298  83 IFRGADFGGFGDIFEMFFGgggrrgrmgpRRGSDLRYDLYITLEEAAFGVRKDID 137
PRK14283 PRK14283
chaperone protein DnaJ; Provisional
 18-95 1.87e-21

chaperone protein DnaJ; Provisional


Pssm-ID: 184604 [Multi-domain]  Cd Length: 378  Bit Score: 95.28  E-value: 1.87e-21
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 22329767   18 RRDPYEVLGVLRNSTDQEIKSAYRKLALKYHPDkTANDPVAADMFKEVTFSYNILSDPEKRRQFDSAGFEAVEAESQE 95
Cdd:PRK14283   4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPD-VSEEEGAEEKFKEISEAYAVLSDDEKRQRYDQFGHAGMDGFSQE 80
DnaJ smart00271
DnaJ molecular chaperone homology domain;
19-77 2.44e-21

DnaJ molecular chaperone homology domain;


Pssm-ID: 197617 [Multi-domain]  Cd Length: 60  Bit Score: 86.90  E-value: 2.44e-21
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329767     19 RDPYEVLGVLRNSTDQEIKSAYRKLALKYHPDK-TANDPVAADMFKEVTFSYNILSDPEK 77
Cdd:smart00271   1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKnPGDKEEAEEKFKEINEAYEVLSDPEK 60
PRK14297 PRK14297
molecular chaperone DnaJ;
19-85 6.61e-21

molecular chaperone DnaJ;


Pssm-ID: 184611 [Multi-domain]  Cd Length: 380  Bit Score: 93.69  E-value: 6.61e-21
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 22329767   19 RDPYEVLGVLRNSTDQEIKSAYRKLALKYHPDKTANDPVAADMFKEVTFSYNILSDPEKRRQFDSAG 85
Cdd:PRK14297   4 KDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFG 70
PRK14294 PRK14294
chaperone protein DnaJ; Provisional
 18-90 7.75e-21

chaperone protein DnaJ; Provisional


Pssm-ID: 237664 [Multi-domain]  Cd Length: 366  Bit Score: 93.29  E-value: 7.75e-21
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 22329767   18 RRDPYEVLGVLRNSTDQEIKSAYRKLALKYHPDKTANDPVAADMFKEVTFSYNILSDPEKRRQFDSAGFEAVE 90
Cdd:PRK14294   3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEGLS 75
PRK14289 PRK14289
molecular chaperone DnaJ;
18-94 1.18e-20

molecular chaperone DnaJ;


Pssm-ID: 237660 [Multi-domain]  Cd Length: 386  Bit Score: 92.97  E-value: 1.18e-20
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 22329767   18 RRDPYEVLGVLRNSTDQEIKSAYRKLALKYHPDKTANDPVAADMFKEVTFSYNILSDPEKRRQFDSAGFEAVEAESQ 94
Cdd:PRK14289   4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAGVGGAAG 80
PRK14295 PRK14295
molecular chaperone DnaJ;
17-84 1.34e-20

molecular chaperone DnaJ;


Pssm-ID: 237665 [Multi-domain]  Cd Length: 389  Bit Score: 92.99  E-value: 1.34e-20
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 22329767   17 LRRDPYEVLGVLRNSTDQEIKSAYRKLALKYHPDKTANDPVAADMFKEVTFSYNILSDPEKRRQFDSA 84
Cdd:PRK14295   7 IEKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDEA 74
PRK14278 PRK14278
chaperone protein DnaJ; Provisional
 19-85 1.52e-20

chaperone protein DnaJ; Provisional


Pssm-ID: 237654 [Multi-domain]  Cd Length: 378  Bit Score: 92.81  E-value: 1.52e-20
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 22329767   19 RDPYEVLGVLRNSTDQEIKSAYRKLALKYHPDktAN-DPVAADMFKEVTFSYNILSDPEKRRQFDSAG 85
Cdd:PRK14278   3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPD--VNpDEEAQEKFKEISVAYEVLSDPEKRRIVDLGG 68
DnaJ cd06257
DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and ...
 20-74 1.88e-20

DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.


Pssm-ID: 99751 [Multi-domain]  Cd Length: 55  Bit Score: 84.13  E-value: 1.88e-20
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*
gi 22329767  20 DPYEVLGVLRNSTDQEIKSAYRKLALKYHPDKTANDPVAADMFKEVTFSYNILSD 74
Cdd:cd06257   1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55
PRK14286 PRK14286
chaperone protein DnaJ; Provisional
 19-91 4.55e-20

chaperone protein DnaJ; Provisional


Pssm-ID: 172774 [Multi-domain]  Cd Length: 372  Bit Score: 91.20  E-value: 4.55e-20
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 22329767   19 RDPYEVLGVLRNSTDQEIKSAYRKLALKYHPDKTANDPVAADMFKEVTFSYNILSDPEKRRQFDSAGFEAVEA 91
Cdd:PRK14286   4 RSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKAGVNA 76
PRK14299 PRK14299
chaperone protein DnaJ; Provisional
 19-94 7.79e-20

chaperone protein DnaJ; Provisional


Pssm-ID: 237667 [Multi-domain]  Cd Length: 291  Bit Score: 89.23  E-value: 7.79e-20
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 22329767   19 RDPYEVLGVLRNSTDQEIKSAYRKLALKYHPDkTANDPVAADMFKEVTFSYNILSDPEKRRQFDSAGFEAVEAESQ 94
Cdd:PRK14299   4 KDYYAILGVPKNASQDEIKKAFKKLARKYHPD-VNKSPGAEEKFKEINEAYTVLSDPEKRRIYDTYGTTAASAGWQ 78
PRK14280 PRK14280
molecular chaperone DnaJ;
18-87 1.97e-19

molecular chaperone DnaJ;


Pssm-ID: 237656 [Multi-domain]  Cd Length: 376  Bit Score: 89.40  E-value: 1.97e-19
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 22329767   18 RRDPYEVLGVLRNSTDQEIKSAYRKLALKYHPD--KTANdpvAADMFKEVTFSYNILSDPEKRRQFDSAGFE 87
Cdd:PRK14280   3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDinKEEG---ADEKFKEISEAYEVLSDDQKRAQYDQFGHA 71
PTZ00037 PTZ00037
DnaJ_C chaperone protein; Provisional
 1-90 2.26e-19

DnaJ_C chaperone protein; Provisional


Pssm-ID: 240236 [Multi-domain]  Cd Length: 421  Bit Score: 89.49  E-value: 2.26e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329767    1 MPGHRSKSEKkDADKQlrrdpYEVLGVLRNSTDQEIKSAYRKLALKYHPDKtANDPvaaDMFKEVTFSYNILSDPEKRRQ 80
Cdd:PTZ00037  16 FDGGRRKREV-DNEKL-----YEVLNLSKDCTTSEIKKAYRKLAIKHHPDK-GGDP---EKFKEISRAYEVLSDPEKRKI 85

                         90
                 ....*....|
gi 22329767   81 FDSAGFEAVE 90
Cdd:PTZ00037  86 YDEYGEEGLE 95
PRK14276 PRK14276
chaperone protein DnaJ; Provisional
 19-85 9.98e-19

chaperone protein DnaJ; Provisional


Pssm-ID: 237653 [Multi-domain]  Cd Length: 380  Bit Score: 87.45  E-value: 9.98e-19
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 22329767   19 RDPYEVLGVLRNSTDQEIKSAYRKLALKYHPDkTANDPVAADMFKEVTFSYNILSDPEKRRQFDSAG 85
Cdd:PRK14276   4 TEYYDRLGVSKDASQDEIKKAYRKLSKKYHPD-INKEPGAEEKYKEVQEAYETLSDPQKRAAYDQYG 69
PRK14284 PRK14284
chaperone protein DnaJ; Provisional
 20-174 2.23e-18

chaperone protein DnaJ; Provisional


Pssm-ID: 237658 [Multi-domain]  Cd Length: 391  Bit Score: 86.44  E-value: 2.23e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329767   20 DPYEVLGVLRNSTDQEIKSAYRKLALKYHPDKTANDPVAADMFKEVTFSYNILSDPEKRRQFDSAGFEAVEAES------ 93
Cdd:PRK14284   2 DYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDGPFAGAggfgga 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329767   94 --QELELDLSS--------LGAVNTVFAALFSKLGvpiktsvsatileEALNGRvsVDPLVLGQAVSKKVEkqcahfyaV 163
Cdd:PRK14284  82 gmGNMEDALRTfmgafggeFGGGGSFFEGLFGGLG-------------EAFGMR--GGPAGARQGASKKVH--------I 138

                        170
                 ....*....|.
gi 22329767  164 TISEEEVSAGL 174
Cdd:PRK14284 139 TLSFEEAAKGV 149
PRK14290 PRK14290
chaperone protein DnaJ; Provisional
 17-114 5.81e-18

chaperone protein DnaJ; Provisional


Pssm-ID: 172778 [Multi-domain]  Cd Length: 365  Bit Score: 84.98  E-value: 5.81e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329767   17 LRRDPYEVLGVLRNSTDQEIKSAYRKLALKYHPD-KTANDPVAADMFKEVTFSYNILSDPEKRRQFDSAGFEAVEAESQE 95
Cdd:PRK14290   1 MAKDYYKILGVDRNASQEDIKKAFRELAKKWHPDlHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVDFGAGGSN 80

                         90       100
                 ....*....|....*....|
gi 22329767   96 LELD-LSSLGAVNTVFAALF 114
Cdd:PRK14290  81 FNWDnFTHFSDINDIFNQIF 100
PRK14292 PRK14292
chaperone protein DnaJ; Provisional
 20-85 7.31e-18

chaperone protein DnaJ; Provisional


Pssm-ID: 237662 [Multi-domain]  Cd Length: 371  Bit Score: 84.56  E-value: 7.31e-18
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 22329767   20 DPYEVLGVLRNSTDQEIKSAYRKLALKYHPDKTaNDPVAADMFKEVTFSYNILSDPEKRRQFDSAG 85
Cdd:PRK14292   3 DYYELLGVSRTASADEIKSAYRKLALKYHPDRN-KEKGAAEKFAQINEAYAVLSDAEKRAHYDRFG 67
PRK14285 PRK14285
chaperone protein DnaJ; Provisional
 17-90 7.36e-18

chaperone protein DnaJ; Provisional


Pssm-ID: 172773 [Multi-domain]  Cd Length: 365  Bit Score: 84.66  E-value: 7.36e-18
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 22329767   17 LRRDPYEVLGVLRNSTDQEIKSAYRKLALKYHPDKTANDPVAADMFKEVTFSYNILSDPEKRRQFDSAGFEAVE 90
Cdd:PRK14285   1 MKRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHTAFE 74
PRK14293 PRK14293
molecular chaperone DnaJ;
19-88 7.73e-18

molecular chaperone DnaJ;


Pssm-ID: 237663 [Multi-domain]  Cd Length: 374  Bit Score: 84.66  E-value: 7.73e-18
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329767   19 RDPYEVLGVLRNSTDQEIKSAYRKLALKYHPDkTANDPVAADMFKEVTFSYNILSDPEKRRQFDSAGfEA 88
Cdd:PRK14293   3 ADYYEILGVSRDADKDELKRAYRRLARKYHPD-VNKEPGAEDRFKEINRAYEVLSDPETRARYDQFG-EA 70
CbpA COG2214
Curved DNA-binding protein CbpA, contains a DnaJ-like domain [Transcription];
18-82 2.57e-17

Curved DNA-binding protein CbpA, contains a DnaJ-like domain [Transcription];


Pssm-ID: 441816 [Multi-domain]  Cd Length: 91  Bit Score: 76.68  E-value: 2.57e-17
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 22329767  18 RRDPYEVLGVLRNSTDQEIKSAYRKLALKYHPDKTANDP-VAADMFKEVTFSYNILSDPEKRRQFD 82
Cdd:COG2214   4 LKDHYAVLGVPPDASLEEIRQAYRRLAKLLHPDRGGELKaLAEELFQRLNEAYEVLSDPERRAEYD 69
PRK14287 PRK14287
chaperone protein DnaJ; Provisional
 18-85 6.59e-17

chaperone protein DnaJ; Provisional


Pssm-ID: 237659 [Multi-domain]  Cd Length: 371  Bit Score: 81.98  E-value: 6.59e-17
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 22329767   18 RRDPYEVLGVLRNSTDQEIKSAYRKLALKYHPDkTANDPVAADMFKEVTFSYNILSDPEKRRQFDSAG 85
Cdd:PRK14287   3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPD-VNKAPDAEDKFKEVKEAYDTLSDPQKKAHYDQFG 69
PRK14279 PRK14279
molecular chaperone DnaJ;
19-124 1.13e-16

molecular chaperone DnaJ;


Pssm-ID: 237655 [Multi-domain]  Cd Length: 392  Bit Score: 81.32  E-value: 1.13e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329767   19 RDPYEVLGVLRNSTDQEIKSAYRKLALKYHPDKTANDPVAADMFKEVTFSYNILSDPEKRRQFD---------------- 82
Cdd:PRK14279   9 KDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDetrrlfagggfggrrf 88

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 22329767   83 --SAGFEAVEAESQELELDLSSL---------GAVNTVFAALFSKLGVPIKTS 124
Cdd:PRK14279  89 dgGGGFGGFGTGGDGAEFNLNDLfdaagrgggGGIGDLFGGLFNRGGGSARPS 141
PRK14282 PRK14282
chaperone protein DnaJ; Provisional
 18-86 1.45e-16

chaperone protein DnaJ; Provisional


Pssm-ID: 184603 [Multi-domain]  Cd Length: 369  Bit Score: 80.61  E-value: 1.45e-16
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329767   18 RRDPYEVLGVLRNSTDQEIKSAYRKLALKYHPDK-TANDPVAADMFKEVTFSYNILSDPEKRRQFDSAGF 86
Cdd:PRK14282   3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRhPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGY 72
PRK14296 PRK14296
chaperone protein DnaJ; Provisional
 18-118 6.28e-16

chaperone protein DnaJ; Provisional


Pssm-ID: 237666 [Multi-domain]  Cd Length: 372  Bit Score: 78.83  E-value: 6.28e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329767   18 RRDPYEVLGVLRNSTDQEIKSAYRKLALKYHPDKTaNDPVAADMFKEVTFSYNILSDPEKRRQFDSAGFEAVEAEsqele 97
Cdd:PRK14296   3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLN-KSPDAHDKMVEINEAADVLLDKDKRKQYDQFGHAAFDGS----- 76

                         90       100
                 ....*....|....*....|.
gi 22329767   98 ldlSSLGAVNTVFAALFSKLG 118
Cdd:PRK14296  77 ---SGFSSNFGDFEDLFSNMG 94
PRK14300 PRK14300
chaperone protein DnaJ; Provisional
 17-115 1.16e-11

chaperone protein DnaJ; Provisional


Pssm-ID: 172788 [Multi-domain]  Cd Length: 372  Bit Score: 65.81  E-value: 1.16e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329767   17 LRRDPYEVLGVLRNSTDQEIKSAYRKLALKYHPDkTANDPVAADMFKEVTFSYNILSDPEKRRQFDSAGFEAVE-AESQE 95
Cdd:PRK14300   1 MSQDYYQILGVSKTASQADLKKAYLKLAKQYHPD-TTDAKDAEKKFKEINAAYDVLKDEQKRAAYDRFGHDAFQnQQSRG 79

                         90       100
                 ....*....|....*....|.
gi 22329767   96 LELDLSSLGA-VNTVFAALFS 115
Cdd:PRK14300  80 GGGNHGGFHPdINDIFGDFFS 100
PRK10266 PRK10266
curved DNA-binding protein;
19-82 2.96e-11

curved DNA-binding protein;


Pssm-ID: 182347 [Multi-domain]  Cd Length: 306  Bit Score: 64.07  E-value: 2.96e-11
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 22329767   19 RDPYEVLGVLRNSTDQEIKSAYRKLALKYHPDkTANDPVAADMFKEVTFSYNILSDPEKRRQFD 82
Cdd:PRK10266   4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPD-VSKEPDAEARFKEVAEAWEVLSDEQRRAEYD 66
PRK14288 PRK14288
molecular chaperone DnaJ;
22-118 5.39e-11

molecular chaperone DnaJ;


Pssm-ID: 172776 [Multi-domain]  Cd Length: 369  Bit Score: 63.94  E-value: 5.39e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329767   22 YEVLGVLRNSTDQEIKSAYRKLALKYHPDKTANDPVAADMFKEVTFSYNILSDPEKRRQFDSAGFEAveaesqeleldLS 101
Cdd:PRK14288   6 YEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGKKG-----------LN 74

                         90
                 ....*....|....*..
gi 22329767  102 SLGAVNTVFAALFSKLG 118
Cdd:PRK14288  75 QAGASQSDFSDFFEDLG 91
DjlA COG1076
DnaJ domain-containing protein [Posttranslational modification, protein turnover, chaperones];
19-84 1.15e-09

DnaJ domain-containing protein [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440694 [Multi-domain]  Cd Length: 75  Bit Score: 54.42  E-value: 1.15e-09
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 22329767  19 RDPYEVLGVLRNSTDQEIKSAYRKLALKYHPDK-TANDP-----VAADMFKEVTFSYNILSDPEKRRQFDSA 84
Cdd:COG1076   4 DDAFELLGLPPDADDAELKRAYRKLQREHHPDRlAAGLPeeeqrLALQKAAAINEAYETLKDPRGIDLAAPA 75
djlA PRK09430
co-chaperone DjlA;
20-51 3.28e-08

co-chaperone DjlA;


Pssm-ID: 236512 [Multi-domain]  Cd Length: 267  Bit Score: 54.43  E-value: 3.28e-08
                         10        20        30
                 ....*....|....*....|....*....|..
gi 22329767   20 DPYEVLGVLRNSTDQEIKSAYRKLALKYHPDK 51
Cdd:PRK09430 201 DAYKVLGVSESDDDQEIKRAYRKLMSEHHPDK 232
PTZ00341 PTZ00341
Ring-infected erythrocyte surface antigen; Provisional
 22-90 7.37e-07

Ring-infected erythrocyte surface antigen; Provisional


Pssm-ID: 173534 [Multi-domain]  Cd Length: 1136  Bit Score: 51.71  E-value: 7.37e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 22329767    22 YEVLGVLRNSTDQEIKSAYRKLALKYHPDKTANDPVAADmFKEVTFSYNILSDPEKRRQFDSAGFEAVE 90
Cdd:PTZ00341  576 YDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHK-FKKINEAYQILGDIDKKKMYNKFGYDGIK 643
ZUO1 COG5269
Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / ...
 20-88 1.21e-06

Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227594 [Multi-domain]  Cd Length: 379  Bit Score: 50.42  E-value: 1.21e-06
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 22329767  20 DPYEVLGVLR---NSTDQEIKSAYRKLALKYHPDKTANDPVAAD--MFKEVTFSYNILSDPEKRRQFDSAGFEA 88
Cdd:COG5269  44 DLYALLGLSKyrtKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCdeFFKLIQKAREVLGDRKLRLQYDSNDFDA 117
ClpA COG0542
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ...
 293-361 3.38e-03

ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440308 [Multi-domain]  Cd Length: 836  Bit Score: 39.68  E-value: 3.38e-03
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 22329767 293 EKEDLrsVEAQILTKRAELAKFETEYREVLVQFTDMTSRYAQEMQSIDELLKQRNEIHSAYTTIPLMKR 361
Cdd:COG0542 426 EKEAL--KKEQDEASFERLAELRDELAELEEELEALKARWEAEKELIEEIQELKEELEQRYGKIPELEK 492
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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