NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|15222008|ref|NP_173371|]
View 

sugar, putative (DUF1195) [Arabidopsis thaliana]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DUF1195 super family cl05977
Protein of unknown function (DUF1195); This family consists of several plant specific ...
 25-140 1.51e-47

Protein of unknown function (DUF1195); This family consists of several plant specific hypothetical proteins of around 160 residues in length. The function of this family is unknown.


The actual alignment was detected with superfamily member pfam06708:

Pssm-ID: 399592  Cd Length: 147  Bit Score: 150.67  E-value: 1.51e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222008    25 YKLWVLIAVLLLAFGSMLTGSVSLK-GIGLFHSADGVNAFSFGDDLDVLEIEEREKVVRQMWDVYGRSGGVKVPRFWREA 103
Cdd:pfam06708  30 YKFWALAAILLLAFWSMFTGSVTLRwSAGNLNRLSDDLDFPIHDDLDVLEMEEREKLVKHMWDVYTNSRRIRLPRFWQEA 109

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 15222008   104 FEAAYEFLISDSAAVRNAAVSDIAKLSlVRFVKSEST 140
Cdd:pfam06708 110 FEAAYEELASDDPAVRDAAISEIAKMS-IRSIELDQP 145
 
Name Accession Description Interval E-value
DUF1195 pfam06708
Protein of unknown function (DUF1195); This family consists of several plant specific ...
 25-140 1.51e-47

Protein of unknown function (DUF1195); This family consists of several plant specific hypothetical proteins of around 160 residues in length. The function of this family is unknown.


Pssm-ID: 399592  Cd Length: 147  Bit Score: 150.67  E-value: 1.51e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222008    25 YKLWVLIAVLLLAFGSMLTGSVSLK-GIGLFHSADGVNAFSFGDDLDVLEIEEREKVVRQMWDVYGRSGGVKVPRFWREA 103
Cdd:pfam06708  30 YKFWALAAILLLAFWSMFTGSVTLRwSAGNLNRLSDDLDFPIHDDLDVLEMEEREKLVKHMWDVYTNSRRIRLPRFWQEA 109

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 15222008   104 FEAAYEFLISDSAAVRNAAVSDIAKLSlVRFVKSEST 140
Cdd:pfam06708 110 FEAAYEELASDDPAVRDAAISEIAKMS-IRSIELDQP 145
 
Name Accession Description Interval E-value
DUF1195 pfam06708
Protein of unknown function (DUF1195); This family consists of several plant specific ...
 25-140 1.51e-47

Protein of unknown function (DUF1195); This family consists of several plant specific hypothetical proteins of around 160 residues in length. The function of this family is unknown.


Pssm-ID: 399592  Cd Length: 147  Bit Score: 150.67  E-value: 1.51e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222008    25 YKLWVLIAVLLLAFGSMLTGSVSLK-GIGLFHSADGVNAFSFGDDLDVLEIEEREKVVRQMWDVYGRSGGVKVPRFWREA 103
Cdd:pfam06708  30 YKFWALAAILLLAFWSMFTGSVTLRwSAGNLNRLSDDLDFPIHDDLDVLEMEEREKLVKHMWDVYTNSRRIRLPRFWQEA 109

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 15222008   104 FEAAYEFLISDSAAVRNAAVSDIAKLSlVRFVKSEST 140
Cdd:pfam06708 110 FEAAYEELASDDPAVRDAAISEIAKMS-IRSIELDQP 145
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH