AGAMOUS-like 65 [Arabidopsis thaliana]
MADS-box domain-containing protein( domain architecture ID 10083688)
MADS (MCM1, AGAMOUS, DEFICIENS, and SRF, serum response factor)-box domain-containing protein functions as a transcription factor and may be involved in various important aspects of development and differentiation
List of domain hits
Name | Accession | Description | Interval | E-value | |||
MADS_SRF_like | cd00266 | SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) ... |
2-82 | 7.81e-27 | |||
SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. : Pssm-ID: 238166 [Multi-domain] Cd Length: 83 Bit Score: 101.95 E-value: 7.81e-27
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Name | Accession | Description | Interval | E-value | |||
MADS_SRF_like | cd00266 | SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) ... |
2-82 | 7.81e-27 | |||
SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Pssm-ID: 238166 [Multi-domain] Cd Length: 83 Bit Score: 101.95 E-value: 7.81e-27
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MADS | smart00432 | MADS domain; |
2-57 | 1.64e-26 | |||
MADS domain; Pssm-ID: 197721 [Multi-domain] Cd Length: 59 Bit Score: 100.32 E-value: 1.64e-26
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SRF-TF | pfam00319 | SRF-type transcription factor (DNA-binding and dimerization domain); |
10-57 | 3.18e-21 | |||
SRF-type transcription factor (DNA-binding and dimerization domain); Pssm-ID: 459760 [Multi-domain] Cd Length: 48 Bit Score: 85.56 E-value: 3.18e-21
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ARG80 | COG5068 | Regulator of arginine metabolism and related MADS box-containing transcription factors ... |
1-57 | 1.20e-05 | |||
Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]; Pssm-ID: 227400 [Multi-domain] Cd Length: 412 Bit Score: 46.93 E-value: 1.20e-05
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Name | Accession | Description | Interval | E-value | |||
MADS_SRF_like | cd00266 | SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) ... |
2-82 | 7.81e-27 | |||
SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Pssm-ID: 238166 [Multi-domain] Cd Length: 83 Bit Score: 101.95 E-value: 7.81e-27
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MADS | smart00432 | MADS domain; |
2-57 | 1.64e-26 | |||
MADS domain; Pssm-ID: 197721 [Multi-domain] Cd Length: 59 Bit Score: 100.32 E-value: 1.64e-26
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MADS_MEF2_like | cd00265 | MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, ... |
2-75 | 3.55e-26 | |||
MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Pssm-ID: 238165 [Multi-domain] Cd Length: 77 Bit Score: 99.93 E-value: 3.55e-26
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MADS | cd00120 | MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic ... |
2-57 | 1.11e-24 | |||
MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators. Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Pssm-ID: 238067 [Multi-domain] Cd Length: 59 Bit Score: 95.66 E-value: 1.11e-24
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SRF-TF | pfam00319 | SRF-type transcription factor (DNA-binding and dimerization domain); |
10-57 | 3.18e-21 | |||
SRF-type transcription factor (DNA-binding and dimerization domain); Pssm-ID: 459760 [Multi-domain] Cd Length: 48 Bit Score: 85.56 E-value: 3.18e-21
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ARG80 | COG5068 | Regulator of arginine metabolism and related MADS box-containing transcription factors ... |
1-57 | 1.20e-05 | |||
Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]; Pssm-ID: 227400 [Multi-domain] Cd Length: 412 Bit Score: 46.93 E-value: 1.20e-05
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Blast search parameters | ||||
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