NCBI Conserved Domain Search

Conserved domains on [gi|15220163|ref|NP_173202|]

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nuclear factor Y, subunit A8 [Arabidopsis thaliana]

Protein Classification

CCAAT-binding transcription factor( domain architecture ID 10649995)

CCAAT-binding transcription factor similar to nuclear transcription factor Y subunit alpha, which is a component of the sequence-specific heterotrimeric transcription factor (NF-Y) which specifically recognizes a 5'-CCAAT-3' box motif found in the promoters of its target genes

Gene Ontology: GO:0003700|GO:0006355|GO:0016602

PubMed: 1549471

Graphical summary

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List of domain hits

Name

Accession

Description

Interval

E-value

CBF

smart00521

CCAAT-Binding transcription Factor;

170-230

1.24e-36

CCAAT-Binding transcription Factor;

Pssm-ID: 128795 [Multi-domain] Cd Length: 62 Bit Score: 126.00 E-value: 1.24e-36

                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 15220163    170 ENEPVFVNAKQFHAIMRRRQQRAKLEAQNKLIKARKPYLHESRHVHALKRPRGSGGRFLNT 230
Cdd:smart00521   2 EEEPVYVNAKQYHRILRRRQARAKLEAQGKLPKERKPYLHESRHLHAMRRPRGSGGRFLNT 62

Name

Accession

Description

Interval

E-value

CBF

smart00521

CCAAT-Binding transcription Factor;

170-230

1.24e-36

CCAAT-Binding transcription Factor;

Pssm-ID: 128795 [Multi-domain] Cd Length: 62 Bit Score: 126.00 E-value: 1.24e-36

                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 15220163    170 ENEPVFVNAKQFHAIMRRRQQRAKLEAQNKLIKARKPYLHESRHVHALKRPRGSGGRFLNT 230
Cdd:smart00521   2 EEEPVYVNAKQYHRILRRRQARAKLEAQGKLPKERKPYLHESRHLHAMRRPRGSGGRFLNT 62

CBFB_NFYA

pfam02045

CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B;

172-227

6.36e-35

CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B;

Pssm-ID: 396572 Cd Length: 56 Bit Score: 121.14 E-value: 6.36e-35

                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 15220163   172 EPVFVNAKQFHAIMRRRQQRAKLEAQNKLIKARKPYLHESRHVHALKRPRGSGGRF 227
Cdd:pfam02045   1 EPIYVNAKQYHRILKRRQARAKLEAEGKLPKNRKPYLHESRHKHAMRRPRGPGGRF 56

HAP2

COG5224

CCAAT-binding factor, subunit B [Transcription];

172-251

6.48e-13

CCAAT-binding factor, subunit B [Transcription];

Pssm-ID: 227549 [Multi-domain] Cd Length: 248 Bit Score: 67.52 E-value: 6.48e-13

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15220163 172 EPVFVNAKQFHAIMRRRQQRAKLEaqNKLIKARKPYLHESRHVHALKRPRGSGGRFL---NTKKLQESTDPKQDMPIQQQ 248
Cdd:COG5224 159 QPDYVNAKQGNEISKRPGLRVYLD--DSVSAGRAFYLHESRHKHAMLRVRDPTGRFLtasEIDPLNLTGNTQDSMIIGQQ 236


                ....
gi 15220163 249 -HAT 251
Cdd:COG5224 237 tYPS 240

Name

Accession

Description

Interval

E-value

CBF

smart00521

CCAAT-Binding transcription Factor;

170-230

1.24e-36

CCAAT-Binding transcription Factor;

Pssm-ID: 128795 [Multi-domain] Cd Length: 62 Bit Score: 126.00 E-value: 1.24e-36

                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 15220163    170 ENEPVFVNAKQFHAIMRRRQQRAKLEAQNKLIKARKPYLHESRHVHALKRPRGSGGRFLNT 230
Cdd:smart00521   2 EEEPVYVNAKQYHRILRRRQARAKLEAQGKLPKERKPYLHESRHLHAMRRPRGSGGRFLNT 62

CBFB_NFYA

pfam02045

CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B;

172-227

6.36e-35

CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B;

Pssm-ID: 396572 Cd Length: 56 Bit Score: 121.14 E-value: 6.36e-35

                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 15220163   172 EPVFVNAKQFHAIMRRRQQRAKLEAQNKLIKARKPYLHESRHVHALKRPRGSGGRF 227
Cdd:pfam02045   1 EPIYVNAKQYHRILKRRQARAKLEAEGKLPKNRKPYLHESRHKHAMRRPRGPGGRF 56

HAP2

COG5224

CCAAT-binding factor, subunit B [Transcription];

172-251

6.48e-13

CCAAT-binding factor, subunit B [Transcription];

Pssm-ID: 227549 [Multi-domain] Cd Length: 248 Bit Score: 67.52 E-value: 6.48e-13

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15220163 172 EPVFVNAKQFHAIMRRRQQRAKLEaqNKLIKARKPYLHESRHVHALKRPRGSGGRFL---NTKKLQESTDPKQDMPIQQQ 248
Cdd:COG5224 159 QPDYVNAKQGNEISKRPGLRVYLD--DSVSAGRAFYLHESRHKHAMLRVRDPTGRFLtasEIDPLNLTGNTQDSMIIGQQ 236


                ....
gi 15220163 249 -HAT 251
Cdd:COG5224 237 tYPS 240

Blast search parameters

Data Source:	Precalculated data, version = cdd.v.3.21
Preset Options:	Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01