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Conserved domains on  [gi|15219259|ref|NP_173098|]
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myb domain protein 58 [Arabidopsis thaliana]

Protein Classification

SANT/Myb-like DNA-binding domain-containing protein( domain architecture ID 999994)

SANT (SWI3, ADA2, N-CoR and TFIIIB)/Myb-like DNA-binding domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN03091 super family cl33633
hypothetical protein; Provisional
 4-149 1.01e-56

hypothetical protein; Provisional


The actual alignment was detected with superfamily member PLN03091:

Pssm-ID: 215570 [Multi-domain]  Cd Length: 459  Bit Score: 188.26  E-value: 1.01e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219259    4 GRAPCCDKTKVKRGPWSHDEDLKLISFIHKNGHENWRSLPKQAGLLRCGKSCRLRWINYLRPDVKRGNFSAEEEDTIIKL 83
Cdd:PLN03091   2 GRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIEL 81

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15219259   84 HQSFGNKWSKIASKLPGRTDNEIKNVWHTHLKKRLSSEtnlNADEAGSKgSLNEEENSQESSPNAS 149
Cdd:PLN03091  82 HAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQR---GIDPNTHK-PLSEVENGEDKNPPTD 143
 
Name Accession Description Interval E-value
PLN03091 PLN03091
hypothetical protein; Provisional
 4-149 1.01e-56

hypothetical protein; Provisional


Pssm-ID: 215570 [Multi-domain]  Cd Length: 459  Bit Score: 188.26  E-value: 1.01e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219259    4 GRAPCCDKTKVKRGPWSHDEDLKLISFIHKNGHENWRSLPKQAGLLRCGKSCRLRWINYLRPDVKRGNFSAEEEDTIIKL 83
Cdd:PLN03091   2 GRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIEL 81

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15219259   84 HQSFGNKWSKIASKLPGRTDNEIKNVWHTHLKKRLSSEtnlNADEAGSKgSLNEEENSQESSPNAS 149
Cdd:PLN03091  82 HAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQR---GIDPNTHK-PLSEVENGEDKNPPTD 143
REB1 COG5147
Myb superfamily proteins, including transcription factors and mRNA splicing factors ...
 11-189 4.99e-16

Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning];


Pssm-ID: 227476 [Multi-domain]  Cd Length: 512  Bit Score: 77.52  E-value: 4.99e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219259  11 KTKVKRGPWSHDEDLKLISFIHKNGHENWRSLPKQAGLlRCGKSCRLRWINYLRPDVKRGNFSAEEEDTIIKLHQSFGNK 90
Cdd:COG5147  15 QTKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLIS-STGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQ 93

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219259  91 WSKIASKLPGRTDNEIKNVW--------HTHLKKRLSSETNLNADEAG---SKGSLNEEENSQESSPNASMSFAGSNISS 159
Cdd:COG5147  94 WSTIADYKDRRTAQQCVERYvntledlsSTHDSKLQRRNEFDKIDPFNensARRPDIYEDELLEREVNREASYRLRVPRV 173

                       170       180       190
                ....*....|....*....|....*....|
gi 15219259 160 KDDDAQISqmfEHILTYSEFTGMLQEVDKP 189
Cdd:COG5147 174 SKADVKPR---EKGEENNPDIEDLQEMKEL 200
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 69-114 2.76e-15

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 68.30  E-value: 2.76e-15
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 15219259    69 RGNFSAEEEDTIIKLHQSFGNKWSKIASKLPGRTDNEIKNVWHTHL 114
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLGNRWKKIAKLLPGRTDNQCKNRWQNYL 46
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
69-116 6.42e-10

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 53.77  E-value: 6.42e-10
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 15219259     69 RGNFSAEEEDTIIKLHQSFG-NKWSKIASKLPGRTDNEIKNVWHTHLKK 116
Cdd:smart00717   1 KGEWTEEEDELLIELVKKYGkNNWEKIAKELPGRTAEQCRERWRNLLKP 49
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 71-114 2.47e-09

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 51.81  E-value: 2.47e-09
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*
gi 15219259  71 NFSAEEEDTIIKLHQSFG-NKWSKIASKLPGRTDNEIKNVWHTHL 114
Cdd:cd00167   1 PWTEEEDELLLEAVKKYGkNNWEKIAKELPGRTPKQCRERWRNLL 45
 
Name Accession Description Interval E-value
PLN03091 PLN03091
hypothetical protein; Provisional
 4-149 1.01e-56

hypothetical protein; Provisional


Pssm-ID: 215570 [Multi-domain]  Cd Length: 459  Bit Score: 188.26  E-value: 1.01e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219259    4 GRAPCCDKTKVKRGPWSHDEDLKLISFIHKNGHENWRSLPKQAGLLRCGKSCRLRWINYLRPDVKRGNFSAEEEDTIIKL 83
Cdd:PLN03091   2 GRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIEL 81

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15219259   84 HQSFGNKWSKIASKLPGRTDNEIKNVWHTHLKKRLSSEtnlNADEAGSKgSLNEEENSQESSPNAS 149
Cdd:PLN03091  82 HAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQR---GIDPNTHK-PLSEVENGEDKNPPTD 143
PLN03212 PLN03212
Transcription repressor MYB5; Provisional
 1-118 1.74e-53

Transcription repressor MYB5; Provisional


Pssm-ID: 178751 [Multi-domain]  Cd Length: 249  Bit Score: 174.11  E-value: 1.74e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219259    1 MGKGRAPCCDKTKVKRGPWSHDEDLKLISFIHKNGHENWRSLPKQAGLLRCGKSCRLRWINYLRPDVKRGNFSAEEEDTI 80
Cdd:PLN03212  10 VSKKTTPCCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLI 89

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 15219259   81 IKLHQSFGNKWSKIASKLPGRTDNEIKNVWHTHLKKRL 118
Cdd:PLN03212  90 LRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKL 127
REB1 COG5147
Myb superfamily proteins, including transcription factors and mRNA splicing factors ...
 11-189 4.99e-16

Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning];


Pssm-ID: 227476 [Multi-domain]  Cd Length: 512  Bit Score: 77.52  E-value: 4.99e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219259  11 KTKVKRGPWSHDEDLKLISFIHKNGHENWRSLPKQAGLlRCGKSCRLRWINYLRPDVKRGNFSAEEEDTIIKLHQSFGNK 90
Cdd:COG5147  15 QTKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLIS-STGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQ 93

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219259  91 WSKIASKLPGRTDNEIKNVW--------HTHLKKRLSSETNLNADEAG---SKGSLNEEENSQESSPNASMSFAGSNISS 159
Cdd:COG5147  94 WSTIADYKDRRTAQQCVERYvntledlsSTHDSKLQRRNEFDKIDPFNensARRPDIYEDELLEREVNREASYRLRVPRV 173

                       170       180       190
                ....*....|....*....|....*....|
gi 15219259 160 KDDDAQISqmfEHILTYSEFTGMLQEVDKP 189
Cdd:COG5147 174 SKADVKPR---EKGEENNPDIEDLQEMKEL 200
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 69-114 2.76e-15

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 68.30  E-value: 2.76e-15
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 15219259    69 RGNFSAEEEDTIIKLHQSFGNKWSKIASKLPGRTDNEIKNVWHTHL 114
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLGNRWKKIAKLLPGRTDNQCKNRWQNYL 46
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 16-63 2.49e-10

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 54.82  E-value: 2.49e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 15219259    16 RGPWSHDEDLKLISFIHKNGHeNWRSLPKQAGlLRCGKSCRLRWINYL 63
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLGN-RWKKIAKLLP-GRTDNQCKNRWQNYL 46
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
69-116 6.42e-10

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 53.77  E-value: 6.42e-10
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 15219259     69 RGNFSAEEEDTIIKLHQSFG-NKWSKIASKLPGRTDNEIKNVWHTHLKK 116
Cdd:smart00717   1 KGEWTEEEDELLIELVKKYGkNNWEKIAKELPGRTAEQCRERWRNLLKP 49
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 71-114 2.47e-09

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 51.81  E-value: 2.47e-09
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*
gi 15219259  71 NFSAEEEDTIIKLHQSFG-NKWSKIASKLPGRTDNEIKNVWHTHL 114
Cdd:cd00167   1 PWTEEEDELLLEAVKKYGkNNWEKIAKELPGRTPKQCRERWRNLL 45
Myb_DNA-bind_6 pfam13921
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 19-77 1.84e-08

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 372817 [Multi-domain]  Cd Length: 60  Bit Score: 50.00  E-value: 1.84e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 15219259    19 WSHDEDLKLISFIHKNGhENWRSLPKQAGLlRCGKSCRLRWINYLRPDVKRGNFSAEEE 77
Cdd:pfam13921   1 WTEEEDEKLLKLVEKYG-NDWKQIAKELGR-RTPKQCFDRWRRKLNPKISRGPWSKEED 57
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
16-65 2.78e-08

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 49.14  E-value: 2.78e-08
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 15219259     16 RGPWSHDEDLKLISFIHKNGHENWRSLPKQAGlLRCGKSCRLRWINYLRP 65
Cdd:smart00717   1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELP-GRTAEQCRERWRNLLKP 49
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 18-63 6.50e-08

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 47.96  E-value: 6.50e-08
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*.
gi 15219259  18 PWSHDEDLKLISFIHKNGHENWRSLPKQAGlLRCGKSCRLRWINYL 63
Cdd:cd00167   1 PWTEEEDELLLEAVKKYGKNNWEKIAKELP-GRTPKQCRERWRNLL 45
Myb_DNA-bind_6 pfam13921
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 72-122 2.62e-06

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 372817 [Multi-domain]  Cd Length: 60  Bit Score: 43.84  E-value: 2.62e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 15219259    72 FSAEEEDTIIKLHQSFGNKWSKIASKLPGRTDNEIKNVWHTHLKKRLSSET 122
Cdd:pfam13921   1 WTEEEDEKLLKLVEKYGNDWKQIAKELGRRTPKQCFDRWRRKLNPKISRGP 51
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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