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Conserved domains on  [gi|15218330|ref|NP_173034|]
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light harvesting complex photosystem II subunit 6 [Arabidopsis thaliana]

Protein Classification

chlorophyll a-b binding domain-containing protein; chlorophyll a-b binding protein( domain architecture ID 10010694)

chlorophyll a-b binding domain-containing protein such as plant chlorophyll a-b binding proteins, which are components of the light-harvesting complex (LHC) that functions as a light receptor, capturing and delivering excitation energy to photosystems with which it is closely associated| chlorophyll a-b binding protein is a component of the light-harvesting complex (LHC) that functions as a light receptor; it captures and delivers excitation energy to photosystems with which it is closely associated

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN00170 PLN00170
photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
 1-258 4.51e-166

photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional


:

Pssm-ID: 215087 [Multi-domain]  Cd Length: 255  Bit Score: 459.40  E-value: 4.51e-166
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218330    1 MAMAVSGAVLSGLGSSFLTGGKRGATALasgVGTGAQRVGRKTLIVAAAAAQPKKSWIPAVKGGGNFLDPEWLDGSLPGD 80
Cdd:PLN00170   1 SAAATSGAVLNGLGSSFLTGGKRSLALL---VGTGAAKVGARTLLVVAAAAQPKKSWIPAVKGGGNLVDPEWLDGSLPGD 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218330   81 FGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGVAWFEAGAQPDAIAPFSFGSLLGTQLLLMGWVESKR 160
Cdd:PLN00170  78 YGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKR 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218330  161 WVDFFNPDSQSVEWATPWSKTAENFANYTGDQGYPGGRFFDPLGLAGKNRDGVYEPDFEKLERLKLAEIKHSRLAMVAML 240
Cdd:PLN00170 158 WVDFFNPDSQSVEWATPWSRTAENFANATGLQGYPGGKFFDPLGLAGTVKDGVYIPDFEKLERLKLAEIKHARLAMVAML 237

                        250
                 ....*....|....*...
gi 15218330  241 IFYFEAGQGKTPLGALGL 258
Cdd:PLN00170 238 IFYFEAGQGKTPLGALGL 255
 
Name Accession Description Interval E-value
PLN00170 PLN00170
photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
 1-258 4.51e-166

photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional


Pssm-ID: 215087 [Multi-domain]  Cd Length: 255  Bit Score: 459.40  E-value: 4.51e-166
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218330    1 MAMAVSGAVLSGLGSSFLTGGKRGATALasgVGTGAQRVGRKTLIVAAAAAQPKKSWIPAVKGGGNFLDPEWLDGSLPGD 80
Cdd:PLN00170   1 SAAATSGAVLNGLGSSFLTGGKRSLALL---VGTGAAKVGARTLLVVAAAAQPKKSWIPAVKGGGNLVDPEWLDGSLPGD 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218330   81 FGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGVAWFEAGAQPDAIAPFSFGSLLGTQLLLMGWVESKR 160
Cdd:PLN00170  78 YGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKR 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218330  161 WVDFFNPDSQSVEWATPWSKTAENFANYTGDQGYPGGRFFDPLGLAGKNRDGVYEPDFEKLERLKLAEIKHSRLAMVAML 240
Cdd:PLN00170 158 WVDFFNPDSQSVEWATPWSRTAENFANATGLQGYPGGKFFDPLGLAGTVKDGVYIPDFEKLERLKLAEIKHARLAMVAML 237

                        250
                 ....*....|....*...
gi 15218330  241 IFYFEAGQGKTPLGALGL 258
Cdd:PLN00170 238 IFYFEAGQGKTPLGALGL 255
Chloroa_b-bind pfam00504
Chlorophyll A-B binding protein;
70-247 1.58e-52

Chlorophyll A-B binding protein;


Pssm-ID: 459836 [Multi-domain]  Cd Length: 159  Bit Score: 167.87  E-value: 1.58e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218330    70 PEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAW------SGVAWFEAGAQpDAIAPFSFG 143
Cdd:pfam00504   2 PAYLDGSLPGDYGFDPLGLSADPETFKRYREAELKHGRWAMLAVLGALVPEALgklgggNEPVWFEAGAV-ALHAQSVPT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218330   144 SLLGTQLLLMGWVESKRWVDFFNPDSQSvewatpwsktaenfanyTGDQGYPGGRFFDPLGLAGKnrdgvyepDFEKLER 223
Cdd:pfam00504  81 LLALQILLLMGFLELARWQGGKAPGLGG-----------------GGDRGYPGGFGFDPLGLAKK--------DPETLAE 135

                         170       180
                  ....*....|....*....|....
gi 15218330   224 LKLAEIKHSRLAMVAMLIFYFEAG 247
Cdd:pfam00504 136 LKLKELKNGRLAMIAFLGFFVQEL 159
 
Name Accession Description Interval E-value
PLN00170 PLN00170
photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
 1-258 4.51e-166

photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional


Pssm-ID: 215087 [Multi-domain]  Cd Length: 255  Bit Score: 459.40  E-value: 4.51e-166
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218330    1 MAMAVSGAVLSGLGSSFLTGGKRGATALasgVGTGAQRVGRKTLIVAAAAAQPKKSWIPAVKGGGNFLDPEWLDGSLPGD 80
Cdd:PLN00170   1 SAAATSGAVLNGLGSSFLTGGKRSLALL---VGTGAAKVGARTLLVVAAAAQPKKSWIPAVKGGGNLVDPEWLDGSLPGD 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218330   81 FGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGVAWFEAGAQPDAIAPFSFGSLLGTQLLLMGWVESKR 160
Cdd:PLN00170  78 YGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKR 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218330  161 WVDFFNPDSQSVEWATPWSKTAENFANYTGDQGYPGGRFFDPLGLAGKNRDGVYEPDFEKLERLKLAEIKHSRLAMVAML 240
Cdd:PLN00170 158 WVDFFNPDSQSVEWATPWSRTAENFANATGLQGYPGGKFFDPLGLAGTVKDGVYIPDFEKLERLKLAEIKHARLAMVAML 237

                        250
                 ....*....|....*...
gi 15218330  241 IFYFEAGQGKTPLGALGL 258
Cdd:PLN00170 238 IFYFEAGQGKTPLGALGL 255
Chloroa_b-bind pfam00504
Chlorophyll A-B binding protein;
70-247 1.58e-52

Chlorophyll A-B binding protein;


Pssm-ID: 459836 [Multi-domain]  Cd Length: 159  Bit Score: 167.87  E-value: 1.58e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218330    70 PEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAW------SGVAWFEAGAQpDAIAPFSFG 143
Cdd:pfam00504   2 PAYLDGSLPGDYGFDPLGLSADPETFKRYREAELKHGRWAMLAVLGALVPEALgklgggNEPVWFEAGAV-ALHAQSVPT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218330   144 SLLGTQLLLMGWVESKRWVDFFNPDSQSvewatpwsktaenfanyTGDQGYPGGRFFDPLGLAGKnrdgvyepDFEKLER 223
Cdd:pfam00504  81 LLALQILLLMGFLELARWQGGKAPGLGG-----------------GGDRGYPGGFGFDPLGLAKK--------DPETLAE 135

                         170       180
                  ....*....|....*....|....
gi 15218330   224 LKLAEIKHSRLAMVAMLIFYFEAG 247
Cdd:pfam00504 136 LKLKELKNGRLAMIAFLGFFVQEL 159
PLN00147 PLN00147
light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
 49-251 4.17e-51

light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional


Pssm-ID: 215076 [Multi-domain]  Cd Length: 252  Bit Score: 167.36  E-value: 4.17e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218330   49 AAAQPKKSWIPAVKgggnflDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAW--SGV- 125
Cdd:PLN00147  40 VVAQERPTWLPGLD------PPPHLDGTLAGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMAGVAGILFTDLLrvTGIr 113

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218330  126 ---AWFEAGAqpdaiAPFSFGS---LLGTQLLLMGWVESKRWVDFFNPDSQSVEwatpwsktaENF----ANYTGDQ-GY 194
Cdd:PLN00147 114 nlpVWYEAGA-----VKFEFAStrtLFVVQLLLMGFAETKRYMDFVSPGSQAKE---------GSFfgleAALEGLEpGY 179

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 15218330  195 PGGRFFDPLGLAgknrdgvyePDFEKLERLKLAEIKHSRLAMVAMLIFYFEAGQGKT 251
Cdd:PLN00147 180 PGGPLFNPLGLA---------KDIENAHDWKLKEIKNGRLAMVAMLGFFVQASVTHT 227
PLN00098 PLN00098
light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
 70-246 9.93e-44

light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional


Pssm-ID: 177716  Cd Length: 267  Bit Score: 148.91  E-value: 9.93e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218330   70 PEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGV------AWFEAGAQPDAIAPFsfg 143
Cdd:PLN00098  72 PEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVAGILIPECLERLgfienfSWYDAGAREYFADPT--- 148

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218330  144 SLLGTQLLLMGWVESKRWVDFFNPDSQSVEWATPwsktaeNFANYTGDQGYPGGRFFDPlGLAGKnrdGVYEPdfekLER 223
Cdd:PLN00098 149 TLFVVQMVLMGWAEGRRWADLIKPGCVDIEPKLP------NKTNPKPDVGYPGGLWFDP-MMWGR---GSPEP----VMV 214

                        170       180
                 ....*....|....*....|...
gi 15218330  224 LKLAEIKHSRLAMVAMLIFYFEA 246
Cdd:PLN00098 215 LRTKEIKNGRLAMLAFVGFCFQA 237
PLN00187 PLN00187
photosystem II light-harvesting complex II protein Lhcb4; Provisional
 25-253 6.92e-41

photosystem II light-harvesting complex II protein Lhcb4; Provisional


Pssm-ID: 177781  Cd Length: 286  Bit Score: 141.85  E-value: 6.92e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218330   25 ATALASGVGTGAQRVGRKTLIVAA------AAAQPKKSWIPAVKGGGNFL-------DPEWLDGSLPGDFGFDPLGLGKD 91
Cdd:PLN00187   4 AAAASSFMGTRVPDVASNSGRIVArfgfgkKKKAAKKAKKKSSKVGADRPlwfpgakAPEWLDGSLVGDYGFDPFGLGKP 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218330   92 PAFLKW-------------------------------------------YREAELIHGRWAMAAVLGIFVGQAWSGVAWF 128
Cdd:PLN00187  84 AEYLQFdldsldqnlaknlagdvigtrteaseikstpfqpysevfglqrFRECELIHGRWAMLATLGALSVEALTGVTWQ 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218330  129 EAG-----------AQPdaiAPFSFGSLLGTQLLLMGWVESKRWVDFfNPDSQSvewatpwsktaenfanytgdqgYPGG 197
Cdd:PLN00187 164 DAGkvelvdgssylGQP---LPFSITTLIWIEVLVIGYIEFQRNAEL-DPEKRL----------------------YPGG 217

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 15218330  198 RFFDPLGLAGknrdgvyepDFEKLERLKLAEIKHSRLAMVAMLIFYFEAG-QGKTPL 253
Cdd:PLN00187 218 KFFDPLGLAA---------DPEKKETLQLAEIKHARLAMVAFLGFAVQAAaTGKGPL 265
PLN00097 PLN00097
photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
 3-240 6.21e-35

photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional


Pssm-ID: 165670 [Multi-domain]  Cd Length: 244  Bit Score: 125.51  E-value: 6.21e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218330    3 MAVSGAVLSGLGSSfltggKRGATALASGVGTGAqRVGRKTLIVAAAAAQPkkSWIPAVKGggnfldPEWLDGSLPGDFG 82
Cdd:PLN00097   1 MASIMAIQLAAGLK-----QKSRTVRPRGVASKA-RASRGPGAVAAAADRP--TWLPGKAA------AAHLDGSLPCDYG 66

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218330   83 FDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWS--GVA----WFEAGAQPDAIAPfsFGSLLGTQLLLMGWV 156
Cdd:PLN00097  67 FDPLNLGADPEMLKWFVQAELMHARWAMLGLAGCVAPELLTkiGMAdlpnWIDAAKWDGYWAG--AGPLFFIQMAMFNWA 144

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218330  157 ESKRWVDFFNPDSQSVEWATPWSKTAENfanytGDQGYPGGrFFDPLGlagknrdgvYEPDFEKLERLKLAEIKHSRLAM 236
Cdd:PLN00097 145 EIRRWQDMKAPGSMNEDPLFGANKGDTN-----TDVGYPKG-LFDKFG---------WAKDEKKAAELKLKEIANGRLAM 209


                 ....
gi 15218330  237 VAML 240
Cdd:PLN00097 210 LAFL 213
PLN00100 PLN00100
light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
 36-256 3.32e-29

light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional


Pssm-ID: 215054  Cd Length: 246  Bit Score: 110.35  E-value: 3.32e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218330   36 AQRVGRKTLIVAAAAAQPKksWIPAVKGggnfldPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLG 115
Cdd:PLN00100  19 GVSTTRRPRVRVAARARPM--WYPGATA------PKYLDGTMAGDYGFDPLRLGANPETLPYLQEAELMNGRWAMAATAG 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218330  116 IFVGQAWSGVAWFEAGAQPDAiapFSFGSLLGTQLLLMGWVESKRWVDFFNpdsqsvewatpwsktaenfanyTGDQGYP 195
Cdd:PLN00100  91 ILFTDAVGLPKFWEAGAEKYG---LDLQTLVLIQVVVMAVLEAARYRGFMK----------------------TGESGVL 145

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15218330  196 GGRFFDPLGLagknrdgvyepdfeKLERLKLAEIKHSRLAMVAMLIFYFEAG-QGKTPLGAL 256
Cdd:PLN00100 146 SFFPFDPTGM--------------DSPEMKVKEVKNGRLAMLAFLGMVSQYAvTGKSPLEGL 193
PLN00101 PLN00101
Photosystem I light-harvesting complex type 4 protein; Provisional
 32-242 4.32e-29

Photosystem I light-harvesting complex type 4 protein; Provisional


Pssm-ID: 215055 [Multi-domain]  Cd Length: 250  Bit Score: 110.39  E-value: 4.32e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218330   32 VGTGAQRVGRKTLIVAAAAAQPKKSWIPAVKGG--GNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWA 109
Cdd:PLN00101  23 LSGSSSKLNRELSFKPMPSSATRSFKVEAKKGEwlPGLASPGYLNGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWA 102

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218330  110 MAAVLGIFVGQAWSGVA------WFEAGaQPDAIAPFSfgSLLGTQLLLMGWVESKRWVDFFNPDSQSVEwatpwsktaE 183
Cdd:PLN00101 103 MLGVAGMLLPEVFTKIGiinapqWYDAG-KAEYFASSS--TLFVIEFILFHYVEIRRWQDIKNPGSVNQD---------P 170

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15218330  184 NFANYT---GDQGYPGGrFFDPLglagknrdgvyepDFEKLERLKLAEIKHSRLAMVAMLIF 242
Cdd:PLN00101 171 IFKQYSlppNEVGYPGG-IFNPL-------------NFAPTEEAKEKELANGRLAMLAFLGF 218
PLN00048 PLN00048
photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
 72-246 6.72e-29

photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional


Pssm-ID: 177680 [Multi-domain]  Cd Length: 262  Bit Score: 109.94  E-value: 6.72e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218330   72 WLDGSLPGDFGFDPLGLgKDPA----FL--KWYREAELIHGRWAMAAVLGI----FVGQAW-----SGVAWFEAGAQPDA 136
Cdd:PLN00048  54 YLDGTLPGDFGFDPLGL-SDPEgaggFIepQWLAYGEVINGRFAMLGAAGAiapeILGKAGlipqeTALPWFQSGVIPPA 132

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218330  137 IAPFSFG---SLLGTQLLLMGWVESKRWVDFFNPDSQSVEWATPWSKTAENfanyTGDQGYPGGRFFDPLGLaGKNRdgv 213
Cdd:PLN00048 133 GTYDYWAdpyTLFVLEMALMGFAEHRRAQDYYKPGSMGKQYFLGLEKGLGG----SGNPAYPGGPFFNPLGF-GKDE--- 204

                        170       180       190
                 ....*....|....*....|....*....|...
gi 15218330  214 yepdfEKLERLKLAEIKHSRLAMVAMLIFYFEA 246
Cdd:PLN00048 205 -----KSMKELKLKEVKNGRLAMLAILGYFIQA 232
PLN00099 PLN00099
light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
 70-256 1.01e-28

light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional


Pssm-ID: 177717  Cd Length: 243  Bit Score: 108.96  E-value: 1.01e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218330   70 PEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGVAWFEA---GAQPDAIA-----PFS 141
Cdd:PLN00099  54 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVKAqewAAIPGGQAtylgnPVP 133

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218330  142 FGSL---LGTQLLLMGWVESKRwvdffnpdsqSVEWATPWSKtaenfanytgdqgYPGGRfFDPLGlagknrdgvYEPDF 218
Cdd:PLN00099 134 WGTLptiLAIEFLAIAFVEHQR----------SMEKDPEKKK-------------YPGGA-FDPLG---------YSKDP 180

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 15218330  219 EKLERLKLAEIKHSRLAMVAMLIFYFE--AGQGKTPLGAL 256
Cdd:PLN00099 181 KKFEEYKVKEIKNGRLALLAFVGFCVQqsAYPGTGPLENL 220
PLN00025 PLN00025
photosystem II light harvesting chlorophyll a/b binding protein; Provisional
 2-253 5.89e-27

photosystem II light harvesting chlorophyll a/b binding protein; Provisional


Pssm-ID: 215033 [Multi-domain]  Cd Length: 262  Bit Score: 104.83  E-value: 5.89e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218330    2 AMAVSGAVLSGlgssflTGGKRGATALASGVGTGaQRVGRKTlivAAAAAQPKKSWIPA--VKGGGNFLD--PEWLDGSL 77
Cdd:PLN00025   1 AMALSSTAFAG------QAALKPPNELSRKVGNG-RVTMRKT---VAKAAGSGSIWYGPdrPKYLGPFSGetPSYLTGEF 70

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218330   78 PGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQ--AWSGV-----AWFEAGAQ------------PDAIA 138
Cdd:PLN00025  71 PGDYGWDTAGLSADPETFARNRELEVIHARWAMLGALGCVTPEllAKNGVkfgeaVWFKAGAQifseggldylgnPSLVH 150

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218330  139 PFSFGSLLGTQLLLMGWVESKRwvdffnpdsqsvewatpwskTAENFANYTGDQGYPGGRfFDPLGLAGknrdgvyepDF 218
Cdd:PLN00025 151 AQSILAIWACQVVLMGAVEGYR--------------------VNGGPLGEGLDPLYPGGS-FDPLGLAD---------DP 200

                        250       260       270
                 ....*....|....*....|....*....|....*.
gi 15218330  219 EKLERLKLAEIKHSRLAMVAMLIFYFEA-GQGKTPL 253
Cdd:PLN00025 201 DTFAELKVKEIKNGRLAMFSMFGFFVQAiVTGKGPL 236
PLN00171 PLN00171
photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
 70-256 5.45e-21

photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional


Pssm-ID: 215088  Cd Length: 324  Bit Score: 89.86  E-value: 5.45e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218330   70 PEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGI-------------FVGQAWSGVAWfeAGAQPD- 135
Cdd:PLN00171 120 PDHLTGELPGDYGFDIAGLGKDPVAFDKYFNFEILHARWAMLAALGVvipevldlfgavhFAEPVWWRVGY--AKLQGDt 197

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218330  136 ----AIAPFSFGSLLGT------QLLLMGWVESKRWVDFfnpdsqsvewatpwsKTAENFANY-TGDQGYPGGRFFDPLG 204
Cdd:PLN00171 198 ldylGIPGLHIAGSQGViviaicQALLMVGPEYARYCGI---------------EALEPLGIYlPGDINYPGGALFDPLG 262

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 15218330  205 LAgknRDGVyepdfeKLERLKLAEIKHSRLAMVAMLIFYFEAG-QGKTPLGAL 256
Cdd:PLN00171 263 LS---KDPV------AFEDLKVKEIKNGRLAMVAWLGFYIQAAvTGKGPVQNL 306
PLN00089 PLN00089
fucoxanthin-chlorophyll a/c binding protein; Provisional
 47-239 1.59e-12

fucoxanthin-chlorophyll a/c binding protein; Provisional


Pssm-ID: 177710 [Multi-domain]  Cd Length: 209  Bit Score: 64.70  E-value: 1.59e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218330   47 AAAAAQPKKSWI-PAV---------KGGGNFLDPEWLDGSLPGDFGFDPLGLG-KDPAFLKWYREAELIHGRWAMAAVLG 115
Cdd:PLN00089  13 AAAAAPAQKSRTrPATptaaaeddcPGAIGFAAKEFMFIGKTGSKKFDPLGLAeKVEEFLPWFRESELKHGRAAMLAVAG 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218330  116 IFV-------GQAWSGVAWFEAGAQPDAIapFSFGSLLgtQLLLmgwveskrWVDFfnpdsqsVEWATpwskTAENFANY 188
Cdd:PLN00089  93 FIApdfvripGEAYSFAAIPKTIDAHDAL--LKSGAMI--QIFA--------WIGF-------VDLAV----SAPAAAAA 149

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 15218330  189 TGDQGYPGGRFFDPLGLagknrdgvYEPDFEKLERLKLAEIKHSRLAMVAM 239
Cdd:PLN00089 150 AEFDRTPGDFGFDLLAL--------YPKDAAKMEKKKDKELKNGRLAMVAI 192
Chloroa_b-bind pfam00504
Chlorophyll A-B binding protein;
61-118 1.06e-10

Chlorophyll A-B binding protein;


Pssm-ID: 459836 [Multi-domain]  Cd Length: 159  Bit Score: 58.47  E-value: 1.06e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 15218330    61 VKGGGNFLDPEWLDGSLPGDFGFDPLGL-GKDPAFLKWYREAELIHGRWAMAAVLGIFV 118
Cdd:pfam00504  98 WQGGKAPGLGGGGDRGYPGGFGFDPLGLaKKDPETLAELKLKELKNGRLAMIAFLGFFV 156
PLN00089 PLN00089
fucoxanthin-chlorophyll a/c binding protein; Provisional
 78-124 3.20e-05

fucoxanthin-chlorophyll a/c binding protein; Provisional


Pssm-ID: 177710 [Multi-domain]  Cd Length: 209  Bit Score: 43.90  E-value: 3.20e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 15218330   78 PGDFGFDPLGLG-KDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSG 124
Cdd:PLN00089 156 PGDFGFDLLALYpKDAAKMEKKKDKELKNGRLAMVAIGGIATGSAITG 203
PLN00120 PLN00120
fucoxanthin-chlorophyll a-c binding protein; Provisional
 181-240 3.65e-05

fucoxanthin-chlorophyll a-c binding protein; Provisional


Pssm-ID: 215063  Cd Length: 202  Bit Score: 43.58  E-value: 3.65e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218330  181 TAENFANYTGDQGyPGGrFFDPLGLagknrdgVYEPDFEKLERLKLAEIKHSRLAMVAML 240
Cdd:PLN00120  30 TNMAFENELGAQA-PLG-FFDPLGL-------VDDGDQEKFDRLRYVEIKHGRISMLAVV 80
PLN00048 PLN00048
photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
 78-129 3.73e-04

photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional


Pssm-ID: 177680 [Multi-domain]  Cd Length: 262  Bit Score: 40.99  E-value: 3.73e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 15218330   78 PGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGVAWFE 129
Cdd:PLN00048 190 PGGPFFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFIQALVTGVGPFQ 241
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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