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Conserved domains on  [gi|79343485|ref|NP_172797|]
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C2H2 and C2HC zinc fingers superfamily protein [Arabidopsis thaliana]

Protein Classification

C2H2-type zinc finger protein( domain architecture ID 10621451)

Cys2His2 (C2H2)-type zinc finger protein may be involved in transcriptional regulation

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
zf-C2H2_6 pfam13912
C2H2-type zinc finger;
50-75 7.23e-03

C2H2-type zinc finger;


:

Pssm-ID: 433576  Cd Length: 27  Bit Score: 32.99  E-value: 7.23e-03
                          10        20
                  ....*....|....*....|....*.
gi 79343485    50 YECRFCSLKFFKSQALGGHMNRHRQE 75
Cdd:pfam13912   2 HECSECGKSFPSYQALGGHKKSHRKE 27
 
Name Accession Description Interval E-value
zf-C2H2_6 pfam13912
C2H2-type zinc finger;
50-75 7.23e-03

C2H2-type zinc finger;


Pssm-ID: 433576  Cd Length: 27  Bit Score: 32.99  E-value: 7.23e-03
                          10        20
                  ....*....|....*....|....*.
gi 79343485    50 YECRFCSLKFFKSQALGGHMNRHRQE 75
Cdd:pfam13912   2 HECSECGKSFPSYQALGGHKKSHRKE 27
 
Name Accession Description Interval E-value
zf-C2H2_6 pfam13912
C2H2-type zinc finger;
50-75 7.23e-03

C2H2-type zinc finger;


Pssm-ID: 433576  Cd Length: 27  Bit Score: 32.99  E-value: 7.23e-03
                          10        20
                  ....*....|....*....|....*.
gi 79343485    50 YECRFCSLKFFKSQALGGHMNRHRQE 75
Cdd:pfam13912   2 HECSECGKSFPSYQALGGHKKSHRKE 27
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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