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Conserved domains on  [gi|15220256|ref|NP_172565|]
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ferredoxin 1 [Arabidopsis thaliana]

Protein Classification

PLN03136 family protein( domain architecture ID 11477514)

PLN03136 family protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN03136 PLN03136
Ferredoxin; Provisional
 1-148 1.21e-95

Ferredoxin; Provisional


:

Pssm-ID: 178681 [Multi-domain]  Cd Length: 148  Bit Score: 272.39  E-value: 1.21e-95
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15220256    1 MASTALSSAIVSTSFLRRQQTPISLRSLPFANTQSLFGLKSSTARGGRVTAMATYKVKFITPEGEQEVECEEDVYVLDAA 80
Cdd:PLN03136   1 MASTALSSAIVSTSFLRRQQTPISLRSLPSANTQSLFGLKSSTARGGRVTAMATYKVKFITPEGEQEVECEEDVYVLDAA 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15220256   81 EEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQMSEGYVLTCVAYPTSDVVIETHKEEAIM 148
Cdd:PLN03136  81 EEAGIDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQISEGYVLTCVAYPTSDVVIETHKEEAIM 148
 
Name Accession Description Interval E-value
PLN03136 PLN03136
Ferredoxin; Provisional
 1-148 1.21e-95

Ferredoxin; Provisional


Pssm-ID: 178681 [Multi-domain]  Cd Length: 148  Bit Score: 272.39  E-value: 1.21e-95
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15220256    1 MASTALSSAIVSTSFLRRQQTPISLRSLPFANTQSLFGLKSSTARGGRVTAMATYKVKFITPEGEQEVECEEDVYVLDAA 80
Cdd:PLN03136   1 MASTALSSAIVSTSFLRRQQTPISLRSLPSANTQSLFGLKSSTARGGRVTAMATYKVKFITPEGEQEVECEEDVYVLDAA 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15220256   81 EEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQMSEGYVLTCVAYPTSDVVIETHKEEAIM 148
Cdd:PLN03136  81 EEAGIDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQISEGYVLTCVAYPTSDVVIETHKEEAIM 148
fdx_plant TIGR02008
ferredoxin [2Fe-2S]; This model represents single domain 2Fe-2S (also called plant type) ...
 53-147 2.88e-53

ferredoxin [2Fe-2S]; This model represents single domain 2Fe-2S (also called plant type) ferredoxins. In general, these occur as a single domain proteins or with a chloroplast transit peptide. Species tend to be photosynthetic, but several forms may occur in one species and individually may not be associated with photocynthesis. Halobacterial forms differ somewhat in architecture; they score between trusted and noise cutoffs. Sequences scoring below the noise cutoff tend to be ferredoxin-related domains of larger proteins.


Pssm-ID: 273926 [Multi-domain]  Cd Length: 97  Bit Score: 163.39  E-value: 2.88e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15220256    53 ATYKVKFITPEGEQEV-ECEEDVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQMSEGYVLTCVA 131
Cdd:TIGR02008   1 ATYKVTLVNPDGGEETiECPDDQYILDAAEEAGIDLPYSCRAGACSTCAGKVEEGTVDQSDQSFLDDDQMEAGYVLTCVA 80

                          90
                  ....*....|....*.
gi 15220256   132 YPTSDVVIETHKEEAI 147
Cdd:TIGR02008  81 YPTSDCTIETHKEEDL 96
fer2 cd00207
2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in ...
 57-140 1.69e-30

2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis and ferredoxins, which participate in redox chains (from bacteria to mammals). Fold is ismilar to thioredoxin.


Pssm-ID: 238126 [Multi-domain]  Cd Length: 84  Bit Score: 105.17  E-value: 1.69e-30
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15220256  57 VKFITPEGEQEVECEEDVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQMSEGYVLTCVAYPTSD 136
Cdd:cd00207   1 VTINVPGSGVEVEVPEGETLLDAAREAGIDIPYSCRAGACGTCKVEVVEGEVDQSDPSLLDEEEAEGGYVLACQTRVTDG 80


                ....
gi 15220256 137 VVIE 140
Cdd:cd00207  81 LVIE 84
Fdx COG0633
Ferredoxin [Energy production and conversion];
73-142 4.42e-30

Ferredoxin [Energy production and conversion];


Pssm-ID: 440398 [Multi-domain]  Cd Length: 87  Bit Score: 104.16  E-value: 4.42e-30
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15220256  73 DVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQMSEGYVLTCVAYPTSDVVIETH 142
Cdd:COG0633  18 GESLLEAALRAGIDLPYSCRSGACGTCHVRVLEGEVDHREEDALSDEERAAGSRLACQARPTSDLVVELP 87
Fer2 pfam00111
2Fe-2S iron-sulfur cluster binding domain;
76-134 5.24e-20

2Fe-2S iron-sulfur cluster binding domain;


Pssm-ID: 395061 [Multi-domain]  Cd Length: 77  Bit Score: 78.33  E-value: 5.24e-20
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 15220256    76 VLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSiDQSDQSFLDDEQMSEGYV-LTCVAYPT 134
Cdd:pfam00111  19 LLDAAEEAGIDIPYSCRGGGCGTCAVKVLEGE-DQSDQSFLEDDELAAGYVvLACQTYPK 77
 
Name Accession Description Interval E-value
PLN03136 PLN03136
Ferredoxin; Provisional
 1-148 1.21e-95

Ferredoxin; Provisional


Pssm-ID: 178681 [Multi-domain]  Cd Length: 148  Bit Score: 272.39  E-value: 1.21e-95
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15220256    1 MASTALSSAIVSTSFLRRQQTPISLRSLPFANTQSLFGLKSSTARGGRVTAMATYKVKFITPEGEQEVECEEDVYVLDAA 80
Cdd:PLN03136   1 MASTALSSAIVSTSFLRRQQTPISLRSLPSANTQSLFGLKSSTARGGRVTAMATYKVKFITPEGEQEVECEEDVYVLDAA 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15220256   81 EEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQMSEGYVLTCVAYPTSDVVIETHKEEAIM 148
Cdd:PLN03136  81 EEAGIDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQISEGYVLTCVAYPTSDVVIETHKEEAIM 148
fdx_plant TIGR02008
ferredoxin [2Fe-2S]; This model represents single domain 2Fe-2S (also called plant type) ...
 53-147 2.88e-53

ferredoxin [2Fe-2S]; This model represents single domain 2Fe-2S (also called plant type) ferredoxins. In general, these occur as a single domain proteins or with a chloroplast transit peptide. Species tend to be photosynthetic, but several forms may occur in one species and individually may not be associated with photocynthesis. Halobacterial forms differ somewhat in architecture; they score between trusted and noise cutoffs. Sequences scoring below the noise cutoff tend to be ferredoxin-related domains of larger proteins.


Pssm-ID: 273926 [Multi-domain]  Cd Length: 97  Bit Score: 163.39  E-value: 2.88e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15220256    53 ATYKVKFITPEGEQEV-ECEEDVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQMSEGYVLTCVA 131
Cdd:TIGR02008   1 ATYKVTLVNPDGGEETiECPDDQYILDAAEEAGIDLPYSCRAGACSTCAGKVEEGTVDQSDQSFLDDDQMEAGYVLTCVA 80

                          90
                  ....*....|....*.
gi 15220256   132 YPTSDVVIETHKEEAI 147
Cdd:TIGR02008  81 YPTSDCTIETHKEEDL 96
petF CHL00134
ferredoxin; Validated
 52-147 8.13e-51

ferredoxin; Validated


Pssm-ID: 177056 [Multi-domain]  Cd Length: 99  Bit Score: 157.19  E-value: 8.13e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15220256   52 MATYKVKFITPEGEQEVECE--EDVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQMSEGYVLTC 129
Cdd:CHL00134   1 MATYKVTLLSEEEGIDVTIDcpDDVYILDAAEEQGIDLPYSCRAGACSTCAGKVTEGTVDQSDQSFLDDDQLEAGFVLTC 80

                         90
                 ....*....|....*...
gi 15220256  130 VAYPTSDVVIETHKEEAI 147
Cdd:CHL00134  81 VAYPTSDCTILTHQEEEL 98
PTZ00038 PTZ00038
ferredoxin; Provisional
 12-145 4.85e-47

ferredoxin; Provisional


Pssm-ID: 240237 [Multi-domain]  Cd Length: 191  Bit Score: 150.76  E-value: 4.85e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15220256   12 STSFLRRQQTPISLRSLPFANTQSLFGLKSS---TARGGRVTAMAT-------YKVKFITPEGEQEVECEEDVYVLDAAE 81
Cdd:PTZ00038  43 SASFISSSASPNRASCYSLGNSKGNTSRPSSngvTPGSSPVRSLLSlrrnplfYNITLQTPDGEKVIECDEDEYILDAAE 122

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15220256   82 EAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQMSEGYVLTCVAYPTSDVVIETHKEE 145
Cdd:PTZ00038 123 RQGVELPYSCRGGSCSTCAAKLLEGEVDNEDQSYLDDEQLKKGYCLLCTCYPKSDCTIETHKED 186
fer2 cd00207
2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in ...
 57-140 1.69e-30

2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis and ferredoxins, which participate in redox chains (from bacteria to mammals). Fold is ismilar to thioredoxin.


Pssm-ID: 238126 [Multi-domain]  Cd Length: 84  Bit Score: 105.17  E-value: 1.69e-30
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15220256  57 VKFITPEGEQEVECEEDVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQMSEGYVLTCVAYPTSD 136
Cdd:cd00207   1 VTINVPGSGVEVEVPEGETLLDAAREAGIDIPYSCRAGACGTCKVEVVEGEVDQSDPSLLDEEEAEGGYVLACQTRVTDG 80


                ....
gi 15220256 137 VVIE 140
Cdd:cd00207  81 LVIE 84
Fdx COG0633
Ferredoxin [Energy production and conversion];
73-142 4.42e-30

Ferredoxin [Energy production and conversion];


Pssm-ID: 440398 [Multi-domain]  Cd Length: 87  Bit Score: 104.16  E-value: 4.42e-30
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15220256  73 DVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQMSEGYVLTCVAYPTSDVVIETH 142
Cdd:COG0633  18 GESLLEAALRAGIDLPYSCRSGACGTCHVRVLEGEVDHREEDALSDEERAAGSRLACQARPTSDLVVELP 87
PRK07609 PRK07609
CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
 76-140 4.94e-22

CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated


Pssm-ID: 181058 [Multi-domain]  Cd Length: 339  Bit Score: 89.54  E-value: 4.94e-22
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15220256   76 VLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSD--QSFLDDEQMSEGYVLTCVAYPTSDVVIE 140
Cdd:PRK07609  22 ILDAALRQGIHLPYGCKNGACGSCKGRLLEGEVEQGPhqASALSGEERAAGEALTCCAKPLSDLVLE 88
Fer2 pfam00111
2Fe-2S iron-sulfur cluster binding domain;
76-134 5.24e-20

2Fe-2S iron-sulfur cluster binding domain;


Pssm-ID: 395061 [Multi-domain]  Cd Length: 77  Bit Score: 78.33  E-value: 5.24e-20
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 15220256    76 VLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSiDQSDQSFLDDEQMSEGYV-LTCVAYPT 134
Cdd:pfam00111  19 LLDAAEEAGIDIPYSCRGGGCGTCAVKVLEGE-DQSDQSFLEDDELAAGYVvLACQTYPK 77
COG3894 COG3894
Uncharacterized 2Fe-2S and 4Fe-4S clusters-containing protein, contains DUF4445 domain ...
 76-147 1.36e-13

Uncharacterized 2Fe-2S and 4Fe-4S clusters-containing protein, contains DUF4445 domain [Function unknown];


Pssm-ID: 443101 [Multi-domain]  Cd Length: 621  Bit Score: 66.75  E-value: 1.36e-13
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15220256  76 VLDAAEEAGLDLPYSCR-AGSCSSCAGKVVSGS---IDQSDQSFLDDEQMSEGYVLTCVAYPTSDVVIETHKEEAI 147
Cdd:COG3894  23 LLDAAREAGVDIDAPCGgRGTCGKCKVKVEEGEfspVTEEERRLLSPEELAEGYRLACQARVLGDLVVEVPPESRL 98
PRK05713 PRK05713
iron-sulfur-binding ferredoxin reductase;
77-141 2.09e-10

iron-sulfur-binding ferredoxin reductase;


Pssm-ID: 235575 [Multi-domain]  Cd Length: 312  Bit Score: 57.04  E-value: 2.09e-10
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 15220256   77 LDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQMSEGYVLTCVAYPTSDVVIET 141
Cdd:PRK05713  20 LDALNAAGVAVPYSCRAGSCHACLVRCLQGEPEDALPEALAAEKREQGWRLACQCRVVGDLRVEV 84
PRK10684 PRK10684
HCP oxidoreductase, NADH-dependent; Provisional
 77-140 6.15e-09

HCP oxidoreductase, NADH-dependent; Provisional


Pssm-ID: 236735 [Multi-domain]  Cd Length: 332  Bit Score: 53.17  E-value: 6.15e-09
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15220256   77 LDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQMSEGYVLTCVAYPTSDVVIE 140
Cdd:PRK10684 269 LEALESNKVPVVAACRAGVCGCCKTKVVSGEYTVSSTMTLTPAEIAQGYVLACSCHPQGDLVLA 332
antC PRK11872
anthranilate 1,2-dioxygenase electron transfer component AntC;
76-136 9.43e-06

anthranilate 1,2-dioxygenase electron transfer component AntC;


Pssm-ID: 183350 [Multi-domain]  Cd Length: 340  Bit Score: 43.96  E-value: 9.43e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15220256   76 VLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQS--DQSFLDDEQMSEGYVLTCVAYPTSD 136
Cdd:PRK11872  25 LLDAALRNGINLPLDCREGVCGTCQGRCESGIYSQDyvDEDALSERDLAQRKMLACQTRVKSD 87
PRK10713 PRK10713
2Fe-2S ferredoxin-like protein;
77-140 1.74e-05

2Fe-2S ferredoxin-like protein;


Pssm-ID: 182668 [Multi-domain]  Cd Length: 84  Bit Score: 40.87  E-value: 1.74e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15220256   77 LDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQ--SFLddeqmSEGYVLTCVAYPTSDVVIE 140
Cdd:PRK10713  23 LAALESHNVAVEYQCREGYCGSCRTRLVAGQVDWIAEplAFI-----QPGEILPCCCRAKGDIEIE 83
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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