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Conserved domains on  [gi|15218482|ref|NP_172496|]
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paired amphipathic helix Sin3-like protein [Arabidopsis thaliana]

Protein Classification

Sin3a_C superfamily-containing protein( domain architecture ID 581762)

Sin3a_C superfamily-containing protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Sin3a_C super family cl25176
C-terminal domain of Sin3a protein; Sin3a_C is a family of eukaryotic species. It is found at ...
1-67 9.08e-19

C-terminal domain of Sin3a protein; Sin3a_C is a family of eukaryotic species. It is found at the C-terminus of the co-repressor Sin3a, and downstream of family Sin3_corepress, pfam08295.


The actual alignment was detected with superfamily member pfam16879:

Pssm-ID: 465294  Cd Length: 281  Bit Score: 76.88  E-value: 9.08e-19
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15218482     1 MDALYNLLDGSIDDNTkFEDECRAIFGAQSYVLFTLDKLVQKFVKHLHAVASDETDTKLLQLHAYEN 67
Cdd:pfam16879  72 LELCERLIDGEIDQSQ-FEDSLRQMYGNKAYKLYTIDKLIQALVKQLQTIVSDSKSQELLELFEKER 137
 
Name Accession Description Interval E-value
Sin3a_C pfam16879
C-terminal domain of Sin3a protein; Sin3a_C is a family of eukaryotic species. It is found at ...
1-67 9.08e-19

C-terminal domain of Sin3a protein; Sin3a_C is a family of eukaryotic species. It is found at the C-terminus of the co-repressor Sin3a, and downstream of family Sin3_corepress, pfam08295.


Pssm-ID: 465294  Cd Length: 281  Bit Score: 76.88  E-value: 9.08e-19
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15218482     1 MDALYNLLDGSIDDNTkFEDECRAIFGAQSYVLFTLDKLVQKFVKHLHAVASDETDTKLLQLHAYEN 67
Cdd:pfam16879  72 LELCERLIDGEIDQSQ-FEDSLRQMYGNKAYKLYTIDKLIQALVKQLQTIVSDSKSQELLELFEKER 137
Sin3 COG5602
Histone deacetylase complex, regulatory component SIN3 [Chromatin structure and dynamics];
5-53 4.72e-03

Histone deacetylase complex, regulatory component SIN3 [Chromatin structure and dynamics];


Pssm-ID: 227889 [Multi-domain]  Cd Length: 1163  Bit Score: 33.74  E-value: 4.72e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 15218482    5 YNLLDGSIDdNTKFEDECRAIFGAQSYVLFTLDKLVQKFVKHLHAVASD 53
Cdd:COG5602  908 YRLIFGALT-PCEFEKYLRPFYNNTCYKIYTIDRLRQSLKKQLHPITYD 955
 
Name Accession Description Interval E-value
Sin3a_C pfam16879
C-terminal domain of Sin3a protein; Sin3a_C is a family of eukaryotic species. It is found at ...
1-67 9.08e-19

C-terminal domain of Sin3a protein; Sin3a_C is a family of eukaryotic species. It is found at the C-terminus of the co-repressor Sin3a, and downstream of family Sin3_corepress, pfam08295.


Pssm-ID: 465294  Cd Length: 281  Bit Score: 76.88  E-value: 9.08e-19
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15218482     1 MDALYNLLDGSIDDNTkFEDECRAIFGAQSYVLFTLDKLVQKFVKHLHAVASDETDTKLLQLHAYEN 67
Cdd:pfam16879  72 LELCERLIDGEIDQSQ-FEDSLRQMYGNKAYKLYTIDKLIQALVKQLQTIVSDSKSQELLELFEKER 137
Sin3 COG5602
Histone deacetylase complex, regulatory component SIN3 [Chromatin structure and dynamics];
5-53 4.72e-03

Histone deacetylase complex, regulatory component SIN3 [Chromatin structure and dynamics];


Pssm-ID: 227889 [Multi-domain]  Cd Length: 1163  Bit Score: 33.74  E-value: 4.72e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 15218482    5 YNLLDGSIDdNTKFEDECRAIFGAQSYVLFTLDKLVQKFVKHLHAVASD 53
Cdd:COG5602  908 YRLIFGALT-PCEFEKYLRPFYNNTCYKIYTIDRLRQSLKKQLHPITYD 955
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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