|
Name |
Accession |
Description |
Interval |
E-value |
| PLN03091 |
PLN03091 |
hypothetical protein; Provisional |
1-365 |
7.34e-143 |
|
hypothetical protein; Provisional
Pssm-ID: 215570 [Multi-domain] Cd Length: 459 Bit Score: 412.83 E-value: 7.34e-143
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329445 1 MGRHSCCYKQKLRKGLWSPEEDEKLLTHITNHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSPEEENLIVE 80
Cdd:PLN03091 1 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329445 81 LHAVLGNRWSQIASRLPGRTDNEIKNLWNSSIKKKLKQRGIDPNTHKPISEVESFSDKDKPTT-SNNKRSGN-------- 151
Cdd:PLN03091 81 LHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHKPLSEVENGEDKNPPTDdKSDKASSVvsnelnll 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329445 152 --DHKSP-----------------------SSSSAT------------------NQDFFLER-------------PSDLS 175
Cdd:PLN03091 161 kaDNSKPlaalqekrsssispagyqlevesSSSSKInnsnnnnhsnsnlmtptpNKDFFLDRfttshessttscrPSDLV 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329445 176 DYFGFQKLNFNSNLGLSVTTDSSLC----------------SMIPPQFSPgNMVGSVLQTPVCVKPSISLPPDNNS---- 235
Cdd:PLN03091 241 GHFPFQQLNYASNARLSTNPNPTLWfsqnsksfemnsefssSMTPSILPP-SVTSSFLPTPMSYKPSISLPSDNPSipsf 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329445 236 ----------SSPISGGDHVKLAAPNWEFQTNNNNTSNFFdnggFSWSIPNSSTSSsqvKPNHNF------EEIKWSEYL 299
Cdd:PLN03091 320 tvngvrnweaGAFSNNSNSSNGSSSSIELQSNSSFFENSI----FSWGLADCGKSD---KEAQIHllesdpEDIKWPEYL 392
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 22329445 300 NTPFFIGSTVQSQTSQPIY--IKSETDYLANVSNMTDPWSQNENlGTTETSDVFSKDLQRMAVSFGQS 365
Cdd:PLN03091 393 QNPFLMAATLQNQTPQPLYneIKPETHFITEGSSTMWPHNQQQQ-EPLQNPDIYTKDLQRLTAAFGQI 459
|
|
| REB1 |
COG5147 |
Myb superfamily proteins, including transcription factors and mRNA splicing factors ... |
8-208 |
4.80e-17 |
|
Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning];
Pssm-ID: 227476 [Multi-domain] Cd Length: 512 Bit Score: 82.14 E-value: 4.80e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329445 8 YKQKLRKGLWSPEEDEKLLTHITNHGHGCWSSVPKLAGLqRCGKSCRLRWINYLRPDLKRGAFSPEEENLIVELHAVLGN 87
Cdd:COG5147 14 MQTKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLIS-STGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGT 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329445 88 RWSQIASRLPGRTDNEIKNLWNSSIKKKLKQRGIDPNTHKPISEVESFSDK-----DKPTTSNNKRSGNDHKS-----PS 157
Cdd:COG5147 93 QWSTIADYKDRRTAQQCVERYVNTLEDLSSTHDSKLQRRNEFDKIDPFNENsarrpDIYEDELLEREVNREASyrlrvPR 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 22329445 158 SSSATNQDFFLERPS--DLSDYFGFQKLNFNS-NLGLSVTTDSSLCSMIPPQFS 208
Cdd:COG5147 173 VSKADVKPREKGEENnpDIEDLQEMKELKSASiTRHLILPSKSEINKAFKKGET 226
|
|
| Myb_DNA-binding |
pfam00249 |
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ... |
67-110 |
1.10e-14 |
|
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.
Pssm-ID: 459731 [Multi-domain] Cd Length: 46 Bit Score: 67.53 E-value: 1.10e-14
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 22329445 67 RGAFSPEEENLIVELHAVLGNRWSQIASRLPGRTDNEIKNLWNS 110
Cdd:pfam00249 1 RGPWTPEEDELLLEAVEKLGNRWKKIAKLLPGRTDNQCKNRWQN 44
|
|
| SANT |
smart00717 |
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains; |
67-114 |
9.48e-11 |
|
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
Pssm-ID: 197842 [Multi-domain] Cd Length: 49 Bit Score: 56.46 E-value: 9.48e-11
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 22329445 67 RGAFSPEEENLIVELHAVLG-NRWSQIASRLPGRTDNEIKNLWNSSIKK 114
Cdd:smart00717 1 KGEWTEEEDELLIELVKKYGkNNWEKIAKELPGRTAEQCRERWRNLLKP 49
|
|
| SANT |
cd00167 |
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ... |
17-61 |
1.82e-10 |
|
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Pssm-ID: 238096 [Multi-domain] Cd Length: 45 Bit Score: 55.66 E-value: 1.82e-10
10 20 30 40
....*....|....*....|....*....|....*....|....*
gi 22329445 17 WSPEEDEKLLTHITNHGHGCWSSVPKLAGLqRCGKSCRLRWINYL 61
Cdd:cd00167 2 WTEEEDELLLEAVKKYGKNNWEKIAKELPG-RTPKQCRERWRNLL 45
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| PLN03091 |
PLN03091 |
hypothetical protein; Provisional |
1-365 |
7.34e-143 |
|
hypothetical protein; Provisional
Pssm-ID: 215570 [Multi-domain] Cd Length: 459 Bit Score: 412.83 E-value: 7.34e-143
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329445 1 MGRHSCCYKQKLRKGLWSPEEDEKLLTHITNHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSPEEENLIVE 80
Cdd:PLN03091 1 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329445 81 LHAVLGNRWSQIASRLPGRTDNEIKNLWNSSIKKKLKQRGIDPNTHKPISEVESFSDKDKPTT-SNNKRSGN-------- 151
Cdd:PLN03091 81 LHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHKPLSEVENGEDKNPPTDdKSDKASSVvsnelnll 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329445 152 --DHKSP-----------------------SSSSAT------------------NQDFFLER-------------PSDLS 175
Cdd:PLN03091 161 kaDNSKPlaalqekrsssispagyqlevesSSSSKInnsnnnnhsnsnlmtptpNKDFFLDRfttshessttscrPSDLV 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329445 176 DYFGFQKLNFNSNLGLSVTTDSSLC----------------SMIPPQFSPgNMVGSVLQTPVCVKPSISLPPDNNS---- 235
Cdd:PLN03091 241 GHFPFQQLNYASNARLSTNPNPTLWfsqnsksfemnsefssSMTPSILPP-SVTSSFLPTPMSYKPSISLPSDNPSipsf 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329445 236 ----------SSPISGGDHVKLAAPNWEFQTNNNNTSNFFdnggFSWSIPNSSTSSsqvKPNHNF------EEIKWSEYL 299
Cdd:PLN03091 320 tvngvrnweaGAFSNNSNSSNGSSSSIELQSNSSFFENSI----FSWGLADCGKSD---KEAQIHllesdpEDIKWPEYL 392
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 22329445 300 NTPFFIGSTVQSQTSQPIY--IKSETDYLANVSNMTDPWSQNENlGTTETSDVFSKDLQRMAVSFGQS 365
Cdd:PLN03091 393 QNPFLMAATLQNQTPQPLYneIKPETHFITEGSSTMWPHNQQQQ-EPLQNPDIYTKDLQRLTAAFGQI 459
|
|
| PLN03212 |
PLN03212 |
Transcription repressor MYB5; Provisional |
6-129 |
2.99e-53 |
|
Transcription repressor MYB5; Provisional
Pssm-ID: 178751 [Multi-domain] Cd Length: 249 Bit Score: 176.42 E-value: 2.99e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329445 6 CCYKQKLRKGLWSPEEDEKLLTHITNHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSPEEENLIVELHAVL 85
Cdd:PLN03212 17 CCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLL 96
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 22329445 86 GNRWSQIASRLPGRTDNEIKNLWNSSIKKKLKQRGIDPNTHKPI 129
Cdd:PLN03212 97 GNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGIDPQTHKPL 140
|
|
| REB1 |
COG5147 |
Myb superfamily proteins, including transcription factors and mRNA splicing factors ... |
8-208 |
4.80e-17 |
|
Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning];
Pssm-ID: 227476 [Multi-domain] Cd Length: 512 Bit Score: 82.14 E-value: 4.80e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329445 8 YKQKLRKGLWSPEEDEKLLTHITNHGHGCWSSVPKLAGLqRCGKSCRLRWINYLRPDLKRGAFSPEEENLIVELHAVLGN 87
Cdd:COG5147 14 MQTKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLIS-STGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGT 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22329445 88 RWSQIASRLPGRTDNEIKNLWNSSIKKKLKQRGIDPNTHKPISEVESFSDK-----DKPTTSNNKRSGNDHKS-----PS 157
Cdd:COG5147 93 QWSTIADYKDRRTAQQCVERYVNTLEDLSSTHDSKLQRRNEFDKIDPFNENsarrpDIYEDELLEREVNREASyrlrvPR 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 22329445 158 SSSATNQDFFLERPS--DLSDYFGFQKLNFNS-NLGLSVTTDSSLCSMIPPQFS 208
Cdd:COG5147 173 VSKADVKPREKGEENnpDIEDLQEMKELKSASiTRHLILPSKSEINKAFKKGET 226
|
|
| Myb_DNA-binding |
pfam00249 |
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ... |
67-110 |
1.10e-14 |
|
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.
Pssm-ID: 459731 [Multi-domain] Cd Length: 46 Bit Score: 67.53 E-value: 1.10e-14
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 22329445 67 RGAFSPEEENLIVELHAVLGNRWSQIASRLPGRTDNEIKNLWNS 110
Cdd:pfam00249 1 RGPWTPEEDELLLEAVEKLGNRWKKIAKLLPGRTDNQCKNRWQN 44
|
|
| Myb_DNA-binding |
pfam00249 |
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ... |
14-61 |
5.84e-12 |
|
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.
Pssm-ID: 459731 [Multi-domain] Cd Length: 46 Bit Score: 59.82 E-value: 5.84e-12
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 22329445 14 KGLWSPEEDEKLLTHITNHGhGCWSSVPKLAGLqRCGKSCRLRWINYL 61
Cdd:pfam00249 1 RGPWTPEEDELLLEAVEKLG-NRWKKIAKLLPG-RTDNQCKNRWQNYL 46
|
|
| SANT |
smart00717 |
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains; |
67-114 |
9.48e-11 |
|
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
Pssm-ID: 197842 [Multi-domain] Cd Length: 49 Bit Score: 56.46 E-value: 9.48e-11
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 22329445 67 RGAFSPEEENLIVELHAVLG-NRWSQIASRLPGRTDNEIKNLWNSSIKK 114
Cdd:smart00717 1 KGEWTEEEDELLIELVKKYGkNNWEKIAKELPGRTAEQCRERWRNLLKP 49
|
|
| SANT |
cd00167 |
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ... |
17-61 |
1.82e-10 |
|
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Pssm-ID: 238096 [Multi-domain] Cd Length: 45 Bit Score: 55.66 E-value: 1.82e-10
10 20 30 40
....*....|....*....|....*....|....*....|....*
gi 22329445 17 WSPEEDEKLLTHITNHGHGCWSSVPKLAGLqRCGKSCRLRWINYL 61
Cdd:cd00167 2 WTEEEDELLLEAVKKYGKNNWEKIAKELPG-RTPKQCRERWRNLL 45
|
|
| Myb_DNA-bind_6 |
pfam13921 |
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ... |
17-75 |
2.98e-10 |
|
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.
Pssm-ID: 372817 [Multi-domain] Cd Length: 60 Bit Score: 55.39 E-value: 2.98e-10
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 22329445 17 WSPEEDEKLLTHITNHGHGcWSSVPKLAGlQRCGKSCRLRWINYLRPDLKRGAFSPEEE 75
Cdd:pfam13921 1 WTEEEDEKLLKLVEKYGND-WKQIAKELG-RRTPKQCFDRWRRKLNPKISRGPWSKEED 57
|
|
| SANT |
smart00717 |
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains; |
14-63 |
3.47e-10 |
|
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
Pssm-ID: 197842 [Multi-domain] Cd Length: 49 Bit Score: 54.92 E-value: 3.47e-10
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 22329445 14 KGLWSPEEDEKLLTHITNHGHGCWSSVPKLAGLqRCGKSCRLRWINYLRP 63
Cdd:smart00717 1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPG-RTAEQCRERWRNLLKP 49
|
|
| SANT |
cd00167 |
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ... |
69-109 |
4.57e-10 |
|
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Pssm-ID: 238096 [Multi-domain] Cd Length: 45 Bit Score: 54.50 E-value: 4.57e-10
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 22329445 69 AFSPEEENLIVELHAVLG-NRWSQIASRLPGRTDNEIKNLWN 109
Cdd:cd00167 1 PWTEEEDELLLEAVKKYGkNNWEKIAKELPGRTPKQCRERWR 42
|
|
| Myb_DNA-bind_6 |
pfam13921 |
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ... |
70-118 |
4.92e-06 |
|
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.
Pssm-ID: 372817 [Multi-domain] Cd Length: 60 Bit Score: 43.45 E-value: 4.92e-06
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 22329445 70 FSPEEENLIVELHAVLGNRWSQIASRLPGRTDNEIKNLWNSSIKKKLKQ 118
Cdd:pfam13921 1 WTEEEDEKLLKLVEKYGNDWKQIAKELGRRTPKQCFDRWRRKLNPKISR 49
|
|
|