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Conserved domains on  [gi|15223001|ref|NP_172256|]
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ribosomal protein S15A [Arabidopsis thaliana]

Protein Classification

uS8 family ribosomal protein; 30S ribosomal protein S8( domain architecture ID 10010655)

uS8 family ribosomal protein such as yeast 40S ribosomal protein S22, plant 40S ribosomal protein S15a, archaea 30S ribosomal protein S8P, and yeast mitochondrial 37S ribosomal protein S8| mitochondrial 37S ribosomal protein S8, related to 30S ribosomal protein S8 which binds directly to the 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN00146 PLN00146
40S ribosomal protein S15a; Provisional
 1-130 1.06e-92

40S ribosomal protein S15a; Provisional


:

Pssm-ID: 215075  Cd Length: 130  Bit Score: 263.40  E-value: 1.06e-92
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15223001    1 MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCGVISPRFD 80
Cdd:PLN00146   1 MVRRSVLNDALKTMYNAEKRGKRQVLIRPSSKVVIKFLKVMQKHGYIGEFEVVDDHRSGKIVVELNGRLNKCGVISPRFD 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 15223001   81 VGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130
Cdd:PLN00146  81 VKVKEIEAWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130
 
Name Accession Description Interval E-value
PLN00146 PLN00146
40S ribosomal protein S15a; Provisional
 1-130 1.06e-92

40S ribosomal protein S15a; Provisional


Pssm-ID: 215075  Cd Length: 130  Bit Score: 263.40  E-value: 1.06e-92
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15223001    1 MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCGVISPRFD 80
Cdd:PLN00146   1 MVRRSVLNDALKTMYNAEKRGKRQVLIRPSSKVVIKFLKVMQKHGYIGEFEVVDDHRSGKIVVELNGRLNKCGVISPRFD 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 15223001   81 VGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130
Cdd:PLN00146  81 VKVKEIEAWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130
RpsH COG0096
Ribosomal protein S8 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S8 ...
 1-130 1.70e-36

Ribosomal protein S8 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S8 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439866  Cd Length: 132  Bit Score: 121.30  E-value: 1.70e-36
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15223001   1 MVRISVLNDALKSMYNAEKRGKRQVMIrPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCGVISPRFD 80
Cdd:COG0096   1 MSMTDPIADMLTRIRNAQMAGKKEVDV-PASKLKGAILKVLKEEGYIKDFEVIEDGKKGKLRVELKYGINGEPVIKGIKR 79

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|...
gi 15223001  81 VGVKEIE---GWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130
Cdd:COG0096  80 VSKPGLRvyvKKEELPRVLNGLGIAIVSTSKGVMTDKEARKKGVGGEVLCYVW 132
Ribosomal_S8 pfam00410
Ribosomal protein S8;
7-130 3.54e-25

Ribosomal protein S8;


Pssm-ID: 425667  Cd Length: 127  Bit Score: 92.08  E-value: 3.54e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15223001     7 LNDALKSMYNAEKRGKRQVMIrPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVELngRLNK-CGVISprfdvGVKE 85
Cdd:pfam00410   3 IADMLTRIRNANMAGHEEVDI-PASKLKGAILKILKEEGYIKDFEVEEDEDKKGIRITL--KYNKgEPVIK-----GLKR 74

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 15223001    86 IE------GWTARLLPSRQ--FGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130
Cdd:pfam00410  75 ISkpglrvYVGKDELPRVLngLGIAILSTSKGVMTDKEARKKGVGGEVLCYVW 127
 
Name Accession Description Interval E-value
PLN00146 PLN00146
40S ribosomal protein S15a; Provisional
 1-130 1.06e-92

40S ribosomal protein S15a; Provisional


Pssm-ID: 215075  Cd Length: 130  Bit Score: 263.40  E-value: 1.06e-92
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15223001    1 MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCGVISPRFD 80
Cdd:PLN00146   1 MVRRSVLNDALKTMYNAEKRGKRQVLIRPSSKVVIKFLKVMQKHGYIGEFEVVDDHRSGKIVVELNGRLNKCGVISPRFD 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 15223001   81 VGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130
Cdd:PLN00146  81 VKVKEIEAWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130
PTZ00158 PTZ00158
40S ribosomal protein S15A; Provisional
 1-130 5.14e-89

40S ribosomal protein S15A; Provisional


Pssm-ID: 185487  Cd Length: 130  Bit Score: 254.26  E-value: 5.14e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15223001    1 MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCGVISPRFD 80
Cdd:PTZ00158   1 MVRMSVLADCLRSIVNAEKQGKRQVLIRPSSKVVVKFLQVMQKHGYIGEFEIVDDHRSGKIVVNLNGRLNKCGVISPRFD 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 15223001   81 VGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130
Cdd:PTZ00158  81 VTLGEFEKWANNILPSRQFGHVVLTTSYGIMDHEEARRRHTGGKILGFFY 130
rps8p PRK04034
30S ribosomal protein S8P; Reviewed
 1-130 2.10e-64

30S ribosomal protein S8P; Reviewed


Pssm-ID: 179721  Cd Length: 130  Bit Score: 191.98  E-value: 2.10e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15223001    1 MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCGVISPRFD 80
Cdd:PRK04034   1 MVLLDPLANALSTIKNAEMVGKKEVIIKPASKLIGNVLRVMQDEGYIGEFEYIDDGRAGKFKVELLGRINKCGAIKPRYP 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 15223001   81 VGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130
Cdd:PRK04034  81 VKYDEFEKWEKRYLPARDFGILIVSTSKGVMSHKEAREKGIGGVLLAYVY 130
RpsH COG0096
Ribosomal protein S8 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S8 ...
 1-130 1.70e-36

Ribosomal protein S8 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S8 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439866  Cd Length: 132  Bit Score: 121.30  E-value: 1.70e-36
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15223001   1 MVRISVLNDALKSMYNAEKRGKRQVMIrPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCGVISPRFD 80
Cdd:COG0096   1 MSMTDPIADMLTRIRNAQMAGKKEVDV-PASKLKGAILKVLKEEGYIKDFEVIEDGKKGKLRVELKYGINGEPVIKGIKR 79

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|...
gi 15223001  81 VGVKEIE---GWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130
Cdd:COG0096  80 VSKPGLRvyvKKEELPRVLNGLGIAIVSTSKGVMTDKEARKKGVGGEVLCYVW 132
Ribosomal_S8 pfam00410
Ribosomal protein S8;
7-130 3.54e-25

Ribosomal protein S8;


Pssm-ID: 425667  Cd Length: 127  Bit Score: 92.08  E-value: 3.54e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15223001     7 LNDALKSMYNAEKRGKRQVMIrPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVELngRLNK-CGVISprfdvGVKE 85
Cdd:pfam00410   3 IADMLTRIRNANMAGHEEVDI-PASKLKGAILKILKEEGYIKDFEVEEDEDKKGIRITL--KYNKgEPVIK-----GLKR 74

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 15223001    86 IE------GWTARLLPSRQ--FGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130
Cdd:pfam00410  75 ISkpglrvYVGKDELPRVLngLGIAILSTSKGVMTDKEARKKGVGGEVLCYVW 127
rpsH PRK00136
30S ribosomal protein S8; Validated
 16-126 8.74e-14

30S ribosomal protein S8; Validated


Pssm-ID: 234658  Cd Length: 130  Bit Score: 63.15  E-value: 8.74e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15223001   16 NAEKRGKRQVMIrPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVEL---------NG--RLNKCGVispRFDVGVK 84
Cdd:PRK00136  15 NAQMAKHETVSM-PASKLKVAIAEILKEEGYIKDYEVEEDGKQGILRITLkygegepviEGikRVSKPGL---RVYKKKD 90

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 15223001   85 EIegwtarllPSRQFGY--IVLTTSAGIMDHEEARRKNVGGKVL 126
Cdd:PRK00136  91 EL--------PKVLNGLgiAIVSTSKGVMTDREARKAGVGGEVL 126
rps8 CHL00042
ribosomal protein S8
 1-126 1.38e-06

ribosomal protein S8


Pssm-ID: 214344  Cd Length: 132  Bit Score: 44.39  E-value: 1.38e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15223001    1 MVR--ISvlnDALKSMYNAEKRGKRQVMIrPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCGV---- 74
Cdd:CHL00042   1 MGNdtIA---DMLTRIRNANMVKKGTVRI-PATNITENIVKILLREGFIENVREHRENNKYFLVLTLKYRGNKKKPyitt 76

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 15223001   75 ---IS-P--RFDVGVKEIegwtARLLPSrqFGYIVLTTSAGIMDHEEARRKNVGGKVL 126
Cdd:CHL00042  77 lkrISkPglRIYSNYKEI----PRVLGG--MGIVILSTSKGIMTDREARLKGIGGEIL 128
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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