|
Name |
Accession |
Description |
Interval |
E-value |
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
421-767 |
1.21e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 65.34 E-value: 1.21e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 421 EEWRQLQTQAKLV-LEENKLLLEQLEIQQRKAKDSHQERLQEVSKLTKQLMLLEAKTHGQEKELAENREQLEILRAKCQE 499
Cdd:COG1196 213 ERYRELKEELKELeAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYE 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 500 LKTHsdgKIAVEVHKSIVNELKSQLQKEEEKERAEMEELMEKLTVLQAQKKSLLLEKNSLTEQNKALEAELERAQKINRK 579
Cdd:COG1196 293 LLAE---LARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLE 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 580 SQKKIEVLKKQVEKAMGNEMSAHQYLANLVGLAENITQERDSLMCLAKCLESEKDGVLNKVIKSNIRLGKLEEKVKGyKK 659
Cdd:COG1196 370 AEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEE-AA 448
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 660 QAALKLGDISHRLLEQQEDFAGKTAQYRQEMRHLHQVLKDKQEVLDQALQQNREMEGELEVIWEStfRENRRIRELLQDT 739
Cdd:COG1196 449 EEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAA--LLLAGLRGLAGAV 526
|
330 340
....*....|....*....|....*...
gi 50083293 740 LTRTGVQDNPRALVAPSLNGVSQADLLD 767
Cdd:COG1196 527 AVLIGVEAAYEAALEAALAAALQNIVVE 554
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
238-714 |
4.24e-07 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 53.57 E-value: 4.24e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 238 EKFEALKEEN----MDLNNMNQSLTLELNTMK----QAMKELQLKLKgmeKEKRKLKEAEKASSQEVAAPEllylrKQAQ 309
Cdd:pfam05483 172 KKYEYEREETrqvyMDLNNNIEKMILAFEELRvqaeNARLEMHFKLK---EDHEKIQHLEEEYKKEINDKE-----KQVS 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 310 ELVDENDGLKMTVHRLNVELSRYQTKFRHLSKEESLNIEGLPS----KGPIPPWLLDIKYlsplllayedMMKEKDELNA 385
Cdd:pfam05483 244 LLLIQITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKEliekKDHLTKELEDIKM----------SLQRSMSTQK 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 386 TLKEEMRMFRMRVQEVVKENEELHQELNKSSAVTSEEWRQLQT------------QAKLVLEENKLLLEQLEIQQR---- 449
Cdd:pfam05483 314 ALEEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEAttcsleellrteQQRLEKNEDQLKIITMELQKKssel 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 450 ----KAKDSHQERLQEVSKL--TKQLMLLEAKTHGQEKELAENREQLEILRAKCQELKTHsDGKIAVEVHKSI------- 516
Cdd:pfam05483 394 eemtKFKNNKEVELEELKKIlaEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIH-DLEIQLTAIKTSeehylke 472
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 517 VNELKSQLQKEEEkeraemeelmeKLTVLQAQKKSLLLEKNSLTEQNKALEAELERAQKINRKSQKKIEVLKKQVEKAMG 596
Cdd:pfam05483 473 VEDLKTELEKEKL-----------KNIELTAHCDKLLLENKELTQEASDMTLELKKHQEDIINCKKQEERMLKQIENLEE 541
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 597 NEMsahQYLANLVGLAENITQERDSLMCLAKCLESEKDGVLNKVIKSNIRLGKLEEKVKGYKKQAALKLGDISHrlLEQQ 676
Cdd:pfam05483 542 KEM---NLRDELESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEE--LHQE 616
|
490 500 510
....*....|....*....|....*....|....*....
gi 50083293 677 EDFAGKTAQYRQEMRHLHQVLKDKQEV-LDQALQQNREM 714
Cdd:pfam05483 617 NKALKKKGSAENKQLNAYEIKVNKLELeLASAKQKFEEI 655
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
449-740 |
4.69e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.52 E-value: 4.69e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 449 RKAKDSHQERLQEVSKLTKQLMLLEAKTHGQEKELAENREQLEILRakcQELKTHSDGKIAVEVHKSIVNELKSQLQKEE 528
Cdd:TIGR02168 666 AKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELE---EELEQLRKELEELSRQISALRKDLARLEAEV 742
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 529 EKERAEMEELMEKLTVLQAQKKSLLLEKNSLTEQNKALEAELERAQKINRKSQKKIEVLKKQVEKAMGNEMSAHQYLANL 608
Cdd:TIGR02168 743 EQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANL 822
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 609 VGLAENITQERDSLMCLAKCLESEKDGVLNKVIKSNIRLGKLEEKVKgyKKQAALKLgdISHRLLEQQEDFAGKTAQYRQ 688
Cdd:TIGR02168 823 RERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIE--ELESELEA--LLNERASLEEALALLRSELEE 898
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 50083293 689 EMRHLHQVLKDKQEvLDQALQQNREMEGELEVIWEST-FRENR---RIRELLQDTL 740
Cdd:TIGR02168 899 LSEELRELESKRSE-LRRELEELREKLAQLELRLEGLeVRIDNlqeRLSEEYSLTL 953
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
238-721 |
2.68e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 51.22 E-value: 2.68e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 238 EKFEALKEENMDLNNMNQSLTLELNTMKQAMKELQLKLKGMEKEKRKLKEAEKASsqevaaPELLYLRKQAQELVDENDG 317
Cdd:PRK03918 231 KELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKEL------KELKEKAEEYIKLSEFYEE 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 318 LKMTVHRLNVELSRYQTKF----RHLSKEESLNIEGLPSKGPIPPWLLDIKYLSPLLLAYEDMMKEKDELNATLKE---- 389
Cdd:PRK03918 305 YLDELREIEKRLSRLEEEIngieERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRltgl 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 390 EMRMFRMRVQEVVKENEELHQELNKSSAVTSEeWRQLQTQAKLVLEENKLLLEQLEIQQRKAKDSHQERL-----QEVSK 464
Cdd:PRK03918 385 TPEKLEKELEELEKAKEEIEEEISKITARIGE-LKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKELleeytAELKR 463
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 465 LTKQLMLLEAKthgqEKELAENREQLEILRAKCQELKTHsdgKIAVEVHKSIVNELKSQLQKEEEKERAEMEELMEKLTV 544
Cdd:PRK03918 464 IEKELKEIEEK----ERKLRKELRELEKVLKKESELIKL---KELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIK 536
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 545 LQAQKKSLLLEKNSLTEQNKALEaELERaqKINRKSQKKIEVLKKQVEKAMGNEMSAHQYLANLVGL------AENITQE 618
Cdd:PRK03918 537 LKGEIKSLKKELEKLEELKKKLA-ELEK--KLDELEEELAELLKELEELGFESVEELEERLKELEPFyneyleLKDAEKE 613
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 619 RDSLMCLAKCLESEKDGVLNKVIKSNIRLGKLEEKVKGYKKQ-AALKLGDISHRLLEQQEDFAGKTAQYRQEMRHLHQVL 697
Cdd:PRK03918 614 LEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKySEEEYEELREEYLELSRELAGLRAELEELEKRREEIK 693
|
490 500
....*....|....*....|....
gi 50083293 698 KDKQEvLDQALQQNREMEGELEVI 721
Cdd:PRK03918 694 KTLEK-LKEELEEREKAKKELEKL 716
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
260-496 |
2.69e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.98 E-value: 2.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 260 ELNTMKQAMKELQLKLKGMEKEKRKLKEAEKASSQEVAApellyLRKQAQELVDENDGLKMTVHRLNVELSRYQTKFRHL 339
Cdd:COG4942 28 ELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAA-----LARRIRALEQELAALEAELAELEKEIAELRAELEAQ 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 340 SKEESLNIEGLPSKGPIPPWLLdikylsplLLAYEDMmkekdelnatlkEEMRMFRMRVQEVVKENEELHQELNKssavT 419
Cdd:COG4942 103 KEELAELLRALYRLGRQPPLAL--------LLSPEDF------------LDAVRRLQYLKYLAPARREQAEELRA----D 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 50083293 420 SEEWRQLQTQAKLVLEENKLLLEQLEIQQRKAKDSHQERLQEVSKLTKQLMLLEAkthgQEKELAENREQLEILRAK 496
Cdd:COG4942 159 LAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAA----ELAELQQEAEELEALIAR 231
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
243-593 |
1.14e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 42.31 E-value: 1.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 243 LKEENMDLNNMNQSLTL---ELNTMKQAMKELQLKLKGMEKEKRKLKEAEKASSQEvaapeLLYLRKQAQELVDENDGLK 319
Cdd:TIGR04523 91 LKKNKDKINKLNSDLSKinsEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTE-----IKKKEKELEKLNNKYNDLK 165
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 320 MTVHRLNVELsryqtkfrHLSKEESLNIEGLPSKgpiPPWLLDIKYLSPLLLayedmmKEKDELNATLKEEMRMFRMRVQ 399
Cdd:TIGR04523 166 KQKEELENEL--------NLLEKEKLNIQKNIDK---IKNKLLKLELLLSNL------KKKIQKNKSLESQISELKKQNN 228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 400 EVVKENEELHQELNKSSAVTSEEWRQL-QTQAKLVLEENKLLLEQLEIQQRKAKdshqerlqeVSKLTKQLMLLEAKTHG 478
Cdd:TIGR04523 229 QLKDNIEKKQQEINEKTTEISNTQTQLnQLKDEQNKIKKQLSEKQKELEQNNKK---------IKELEKQLNQLKSEISD 299
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 479 QEKELAEN-----REQLEILRAKCQELKTH-SDGKIAVEVHKSIVNELKSQLQKEEEKERAEMEELMEK---LTVLQAQK 549
Cdd:TIGR04523 300 LNNQKEQDwnkelKSELKNQEKKLEEIQNQiSQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKqneIEKLKKEN 379
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 50083293 550 KSLLLEKNSLTEQNKALEAELERAQKINRKSQKKIEV--------------LKKQVEK 593
Cdd:TIGR04523 380 QSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKlqqekellekeierLKETIIK 437
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
221-314 |
2.98e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 40.97 E-value: 2.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 221 SPDITGRARQRYTEitrekfealkeENMDLNNMNQSLTLELNTMKQAMKELQLKLKGMEKEKRKLKEaEKASSQEVAAPE 300
Cdd:PRK00409 500 PENIIEEAKKLIGE-----------DKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEE-KKEKLQEEEDKL 567
|
90
....*....|....
gi 50083293 301 LLYLRKQAQELVDE 314
Cdd:PRK00409 568 LEEAEKEAQQAIKE 581
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
421-767 |
1.21e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 65.34 E-value: 1.21e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 421 EEWRQLQTQAKLV-LEENKLLLEQLEIQQRKAKDSHQERLQEVSKLTKQLMLLEAKTHGQEKELAENREQLEILRAKCQE 499
Cdd:COG1196 213 ERYRELKEELKELeAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYE 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 500 LKTHsdgKIAVEVHKSIVNELKSQLQKEEEKERAEMEELMEKLTVLQAQKKSLLLEKNSLTEQNKALEAELERAQKINRK 579
Cdd:COG1196 293 LLAE---LARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLE 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 580 SQKKIEVLKKQVEKAMGNEMSAHQYLANLVGLAENITQERDSLMCLAKCLESEKDGVLNKVIKSNIRLGKLEEKVKGyKK 659
Cdd:COG1196 370 AEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEE-AA 448
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 660 QAALKLGDISHRLLEQQEDFAGKTAQYRQEMRHLHQVLKDKQEVLDQALQQNREMEGELEVIWEStfRENRRIRELLQDT 739
Cdd:COG1196 449 EEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAA--LLLAGLRGLAGAV 526
|
330 340
....*....|....*....|....*...
gi 50083293 740 LTRTGVQDNPRALVAPSLNGVSQADLLD 767
Cdd:COG1196 527 AVLIGVEAAYEAALEAALAAALQNIVVE 554
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
238-714 |
4.24e-07 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 53.57 E-value: 4.24e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 238 EKFEALKEEN----MDLNNMNQSLTLELNTMK----QAMKELQLKLKgmeKEKRKLKEAEKASSQEVAAPEllylrKQAQ 309
Cdd:pfam05483 172 KKYEYEREETrqvyMDLNNNIEKMILAFEELRvqaeNARLEMHFKLK---EDHEKIQHLEEEYKKEINDKE-----KQVS 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 310 ELVDENDGLKMTVHRLNVELSRYQTKFRHLSKEESLNIEGLPS----KGPIPPWLLDIKYlsplllayedMMKEKDELNA 385
Cdd:pfam05483 244 LLLIQITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKEliekKDHLTKELEDIKM----------SLQRSMSTQK 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 386 TLKEEMRMFRMRVQEVVKENEELHQELNKSSAVTSEEWRQLQT------------QAKLVLEENKLLLEQLEIQQR---- 449
Cdd:pfam05483 314 ALEEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEAttcsleellrteQQRLEKNEDQLKIITMELQKKssel 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 450 ----KAKDSHQERLQEVSKL--TKQLMLLEAKTHGQEKELAENREQLEILRAKCQELKTHsDGKIAVEVHKSI------- 516
Cdd:pfam05483 394 eemtKFKNNKEVELEELKKIlaEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIH-DLEIQLTAIKTSeehylke 472
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 517 VNELKSQLQKEEEkeraemeelmeKLTVLQAQKKSLLLEKNSLTEQNKALEAELERAQKINRKSQKKIEVLKKQVEKAMG 596
Cdd:pfam05483 473 VEDLKTELEKEKL-----------KNIELTAHCDKLLLENKELTQEASDMTLELKKHQEDIINCKKQEERMLKQIENLEE 541
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 597 NEMsahQYLANLVGLAENITQERDSLMCLAKCLESEKDGVLNKVIKSNIRLGKLEEKVKGYKKQAALKLGDISHrlLEQQ 676
Cdd:pfam05483 542 KEM---NLRDELESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEE--LHQE 616
|
490 500 510
....*....|....*....|....*....|....*....
gi 50083293 677 EDFAGKTAQYRQEMRHLHQVLKDKQEV-LDQALQQNREM 714
Cdd:pfam05483 617 NKALKKKGSAENKQLNAYEIKVNKLELeLASAKQKFEEI 655
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
449-740 |
4.69e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.52 E-value: 4.69e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 449 RKAKDSHQERLQEVSKLTKQLMLLEAKTHGQEKELAENREQLEILRakcQELKTHSDGKIAVEVHKSIVNELKSQLQKEE 528
Cdd:TIGR02168 666 AKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELE---EELEQLRKELEELSRQISALRKDLARLEAEV 742
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 529 EKERAEMEELMEKLTVLQAQKKSLLLEKNSLTEQNKALEAELERAQKINRKSQKKIEVLKKQVEKAMGNEMSAHQYLANL 608
Cdd:TIGR02168 743 EQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANL 822
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 609 VGLAENITQERDSLMCLAKCLESEKDGVLNKVIKSNIRLGKLEEKVKgyKKQAALKLgdISHRLLEQQEDFAGKTAQYRQ 688
Cdd:TIGR02168 823 RERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIE--ELESELEA--LLNERASLEEALALLRSELEE 898
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 50083293 689 EMRHLHQVLKDKQEvLDQALQQNREMEGELEVIWEST-FRENR---RIRELLQDTL 740
Cdd:TIGR02168 899 LSEELRELESKRSE-LRRELEELREKLAQLELRLEGLeVRIDNlqeRLSEEYSLTL 953
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
370-622 |
1.07e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 52.37 E-value: 1.07e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 370 LLAYEDMMKEKDELNATLKEEMRMFRMRVQEVVKENEELHQELNKSSAVTSEEWRQLQ-TQAKLVLEENKllLEQLEIQQ 448
Cdd:TIGR02168 248 LKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQiLRERLANLERQ--LEELEAQL 325
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 449 RKAKDSHQERLQEVSKLTKQLMLLEAKTHGQEKELAENREQLEILRAKCQELKTHSDGKiavevhKSIVNELKSQLQKee 528
Cdd:TIGR02168 326 EELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETL------RSKVAQLELQIAS-- 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 529 ekeraemeeLMEKLTVLQAQKKSLLLEKNSLTEQNKALEAELERAQKinRKSQKKIEVLKKQVEKAMGNEMSAHQYLANL 608
Cdd:TIGR02168 398 ---------LNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAEL--KELQAELEELEEELEELQEELERLEEALEEL 466
|
250
....*....|....
gi 50083293 609 VGLAENITQERDSL 622
Cdd:TIGR02168 467 REELEEAEQALDAA 480
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
399-608 |
1.90e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.92 E-value: 1.90e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 399 QEVVKENEELHQELNKSSAVTSEEWRQLQTQAKLVLEEnkllLEQLEIQQRKAKDSHQERLQEVSKLTKQLMLLEAKTHG 478
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQ----LAALERRIAALARRIRALEQELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 479 QEKELAENREQL-EILRAKCQ-------ELKTHSDGKIAVEVHKSIVNELKSQLQKEEEKERAEMEELMEKLTVLQAQKK 550
Cdd:COG4942 95 LRAELEAQKEELaELLRALYRlgrqpplALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERA 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 50083293 551 SLLLEKNSLTEQNKALEAELERAQKINRKSQKKIEVLKKQVEKAMGNEMSAHQYLANL 608
Cdd:COG4942 175 ELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARL 232
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
238-721 |
2.68e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 51.22 E-value: 2.68e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 238 EKFEALKEENMDLNNMNQSLTLELNTMKQAMKELQLKLKGMEKEKRKLKEAEKASsqevaaPELLYLRKQAQELVDENDG 317
Cdd:PRK03918 231 KELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKEL------KELKEKAEEYIKLSEFYEE 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 318 LKMTVHRLNVELSRYQTKF----RHLSKEESLNIEGLPSKGPIPPWLLDIKYLSPLLLAYEDMMKEKDELNATLKE---- 389
Cdd:PRK03918 305 YLDELREIEKRLSRLEEEIngieERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRltgl 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 390 EMRMFRMRVQEVVKENEELHQELNKSSAVTSEeWRQLQTQAKLVLEENKLLLEQLEIQQRKAKDSHQERL-----QEVSK 464
Cdd:PRK03918 385 TPEKLEKELEELEKAKEEIEEEISKITARIGE-LKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKELleeytAELKR 463
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 465 LTKQLMLLEAKthgqEKELAENREQLEILRAKCQELKTHsdgKIAVEVHKSIVNELKSQLQKEEEKERAEMEELMEKLTV 544
Cdd:PRK03918 464 IEKELKEIEEK----ERKLRKELRELEKVLKKESELIKL---KELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIK 536
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 545 LQAQKKSLLLEKNSLTEQNKALEaELERaqKINRKSQKKIEVLKKQVEKAMGNEMSAHQYLANLVGL------AENITQE 618
Cdd:PRK03918 537 LKGEIKSLKKELEKLEELKKKLA-ELEK--KLDELEEELAELLKELEELGFESVEELEERLKELEPFyneyleLKDAEKE 613
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 619 RDSLMCLAKCLESEKDGVLNKVIKSNIRLGKLEEKVKGYKKQ-AALKLGDISHRLLEQQEDFAGKTAQYRQEMRHLHQVL 697
Cdd:PRK03918 614 LEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKySEEEYEELREEYLELSRELAGLRAELEELEKRREEIK 693
|
490 500
....*....|....*....|....
gi 50083293 698 KDKQEvLDQALQQNREMEGELEVI 721
Cdd:PRK03918 694 KTLEK-LKEELEEREKAKKELEKL 716
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
265-613 |
2.94e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 51.09 E-value: 2.94e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 265 KQAMKELQLKLKGMEKEKRKLKEAEKASSQEVAAPELLYLRKQAQELVDENDGLKMTVHRLNVELSRYQTKFRHLSKEEs 344
Cdd:COG1196 219 KEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAEL- 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 345 lnieglpskgpippwlldikylsplllayedmmkekdelnATLKEEMRMFRMRVQEVVKENEELHQELnkssavtsEEWR 424
Cdd:COG1196 298 ----------------------------------------ARLEQDIARLEERRRELEERLEELEEEL--------AELE 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 425 QLQTQAKLVLEENKLLLEQLEIQQRKAKDSHQERLQEVSKLTKQLMLLEAKTHGQEKELAENREQLEILRAKCQELKTHS 504
Cdd:COG1196 330 EELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAE 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 505 DGKiavevhksivNELKSQLQKEEEKERAEMEELMEKLTVLQAQKKSLLLEKNSLTEQNKALEAELERAQKINRKSQKKI 584
Cdd:COG1196 410 EAL----------LERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAAL 479
|
330 340
....*....|....*....|....*....
gi 50083293 585 EVLKKQVEKAMGNEMSAHQYLANLVGLAE 613
Cdd:COG1196 480 AELLEELAEAAARLLLLLEAEADYEGFLE 508
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
378-721 |
5.39e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 50.36 E-value: 5.39e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 378 KEKDELNATLKEEMRMFRMRVQEVVKENEELHQELnKSSAVTSEEWRQLQTQAK--------LVLEENKLLLEQLEIQQR 449
Cdd:pfam02463 166 RLKRKKKEALKKLIEETENLAELIIDLEELKLQEL-KLKEQAKKALEYYQLKEKleleeeylLYLDYLKLNEERIDLLQE 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 450 KAKDSHQERLQEVSKLTKQLMLLEAKTHGQEKELAENREQLEILRAKCQELKTHSDGKIAVEVHKSIVNELKSQLQKEEE 529
Cdd:pfam02463 245 LLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKK 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 530 KERAEMEELMEKLTVLQAQKKslllEKNSLTEQNKALEAELERAQKINRKSQKKIEVLKKQVEKAMGNEMSAHQYLANlv 609
Cdd:pfam02463 325 KAEKELKKEKEEIEELEKELK----ELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELE-- 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 610 gLAENITQERDSLMCLAKCLESEKDGVLNKVIKSNIRLGKLEEKVKGYKKQAALKLGDISHRLLEQQEDF---AGKTAQY 686
Cdd:pfam02463 399 -LKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELkksEDLLKET 477
|
330 340 350
....*....|....*....|....*....|....*
gi 50083293 687 RQEMRHLHQVLKDKQEVLDQALQQNREMEGELEVI 721
Cdd:pfam02463 478 QLVKLQEQLELLLSRQKLEERSQKESKARSGLKVL 512
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
374-622 |
9.71e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 49.27 E-value: 9.71e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 374 EDMMKEKDELNATLKEeMRMFRMRVQEVVKENEELH---------QELNKSSAV-TSEEWRQLQTQAKLVLEENKLLLEQ 443
Cdd:PRK02224 415 EELREERDELREREAE-LEATLRTARERVEEAEALLeagkcpecgQPVEGSPHVeTIEEDRERVEELEAELEDLEEEVEE 493
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 444 LEIQQRKAKDShQERLQEVSKLTKQLMLLEAKTHGQEKELAENREQLEILRAKCQELKTHSDGK--------IAVEVHKS 515
Cdd:PRK02224 494 VEERLERAEDL-VEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKreaaaeaeEEAEEARE 572
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 516 IVNELKSQLQKEEEKERAemeelMEKLTVLQAQKKSLLLEKNSLTEQNKAL-EAELER----AQKINRKSQKKIEVLKKQ 590
Cdd:PRK02224 573 EVAELNSKLAELKERIES-----LERIRTLLAAIADAEDEIERLREKREALaELNDERrerlAEKRERKRELEAEFDEAR 647
|
250 260 270
....*....|....*....|....*....|..
gi 50083293 591 VEKAMGNEMSAHQYLANLVGLAENITQERDSL 622
Cdd:PRK02224 648 IEEAREDKERAEEYLEQVEEKLDELREERDDL 679
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
361-594 |
4.78e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.98 E-value: 4.78e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 361 LDIKYLSPLLLAYEDMMKEKDELNATLKEEMRMFRMRVQEVVKENEELHQELNKSSAvtseEWRQLQTQAklvlEENKLL 440
Cdd:TIGR02169 667 LFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEK----EIEQLEQEE----EKLKER 738
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 441 LEQLEIQQRKAKDSHQERLQEVSKLTKQLMLLEAKTHGQEKELAE-----NREQLEILRAKCQELKthsdgkiavEVHKS 515
Cdd:TIGR02169 739 LEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDlearlSHSRIPEIQAELSKLE---------EEVSR 809
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 516 I---VNELKSQLQKEEEKER---AEMEELMEKLTVLQAQKKSLLLEKNSLTEQNKALEAELERAQKINRKSQKKIEVLKK 589
Cdd:TIGR02169 810 IearLREIEQKLNRLTLEKEyleKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKK 889
|
....*
gi 50083293 590 QVEKA 594
Cdd:TIGR02169 890 ERDEL 894
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
403-622 |
9.86e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 45.80 E-value: 9.86e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 403 KENEELHQELNkssavtseewrQLQTQAKLVLEEnkllLEQLEIQQRKAK----------DSHQERLQEVSKLTKQLMLL 472
Cdd:PRK02224 199 KEEKDLHERLN-----------GLESELAELDEE----IERYEEQREQARetrdeadevlEEHEERREELETLEAEIEDL 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 473 EAKTHGQEKELAENREQLEILRAKCQELKTHSDGKIA-----------VEVHKSIVNELKSQLQKEEEKERAEMEELMEK 541
Cdd:PRK02224 264 RETIAETEREREELAEEVRDLRERLEELEEERDDLLAeaglddadaeaVEARREELEDRDEELRDRLEECRVAAQAHNEE 343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 542 LTVLQAQKKSLLLEKNSLTEQNKALEAELERAQKINRKSQKKIEVLKKQVEKAMGNEMSAHQYLANLVGLAENITQERDS 621
Cdd:PRK02224 344 AESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDE 423
|
.
gi 50083293 622 L 622
Cdd:PRK02224 424 L 424
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
370-655 |
2.12e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 45.05 E-value: 2.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 370 LLAYEDMMKEKDELNATLKEEMRMFRMRVQEVVKENEELHQELNKSSAVTSEEWRQL---QTQAKLVLEENKLLLEQLEI 446
Cdd:TIGR02168 672 ILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQIsalRKDLARLEAEVEQLEERIAQ 751
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 447 QQRKAKDSHQERLQEVSKLTK----------QLMLLEAKTHGQEKELAENREQLEILRAKCQELKT-----------HSD 505
Cdd:TIGR02168 752 LSKELTELEAEIEELEERLEEaeeelaeaeaEIEELEAQIEQLKEELKALREALDELRAELTLLNEeaanlrerlesLER 831
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 506 GKIAVEVHKSIVNELKSQLQKEEEKERAEMEELMEKLTVLQAQKKSLLLEKNSLTEQNKALEAELERAQKINRKSQKKIE 585
Cdd:TIGR02168 832 RIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRS 911
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 50083293 586 VLKKQVEKAMGNEMSAHQYLANL-VGLAENITQERDSLMCLAKCLESEKDGVLNKVIKSNIRLGKLEEKVK 655
Cdd:TIGR02168 912 ELRRELEELREKLAQLELRLEGLeVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIK 982
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
260-496 |
2.69e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.98 E-value: 2.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 260 ELNTMKQAMKELQLKLKGMEKEKRKLKEAEKASSQEVAApellyLRKQAQELVDENDGLKMTVHRLNVELSRYQTKFRHL 339
Cdd:COG4942 28 ELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAA-----LARRIRALEQELAALEAELAELEKEIAELRAELEAQ 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 340 SKEESLNIEGLPSKGPIPPWLLdikylsplLLAYEDMmkekdelnatlkEEMRMFRMRVQEVVKENEELHQELNKssavT 419
Cdd:COG4942 103 KEELAELLRALYRLGRQPPLAL--------LLSPEDF------------LDAVRRLQYLKYLAPARREQAEELRA----D 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 50083293 420 SEEWRQLQTQAKLVLEENKLLLEQLEIQQRKAKDSHQERLQEVSKLTKQLMLLEAkthgQEKELAENREQLEILRAK 496
Cdd:COG4942 159 LAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAA----ELAELQQEAEELEALIAR 231
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
255-573 |
2.94e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 44.54 E-value: 2.94e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 255 QSLTLELNTMKQAMKELQLKLKGMEKEKRKLKEAEKASSQEVAAPELLYLRKQAQELVdendgLKMTVHRLNVELSRYQT 334
Cdd:COG1196 235 RELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYE-----LLAELARLEQDIARLEE 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 335 KFRHLSKEESLNIEglpskgpippwllDIKYLSPLLLAYEDMMKEKDELNATLKEEMRMFRMRVQEVVKENEELHQELNK 414
Cdd:COG1196 310 RRRELEERLEELEE-------------ELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAE 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 415 SSAVTSEEWRQLQTQAKLVLEENKLLLEQLEIQQRKAKDSHQERLQEVSKLTKQLMLLEAKTHGQEKELAENREQLEILR 494
Cdd:COG1196 377 AEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEE 456
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 50083293 495 AKCQELKTHSDGKIAVEVHKSIVNELKSQLQKEEEKERAEMEELMEKLTVLQAQKKSLLLEKNSLTEQNKALEAELERA 573
Cdd:COG1196 457 EEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAA 535
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
369-622 |
3.10e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 44.54 E-value: 3.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 369 LLLAYEDMMKEKDELNATLKEEMRMFRMRVQEVVKENEELhQELNKSSAVTSEEWRQLQTQAKLVLEENKLLLEQLEIQQ 448
Cdd:COG1196 230 LLLKLRELEAELEELEAELEELEAELEELEAELAELEAEL-EELRLELEELELELEEAQAEEYELLAELARLEQDIARLE 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 449 RKAKDShQERLQEVSKLTKQLMLLEAKTHGQEKELAENREQLEILRAKCQELKTHSDGKIAVEVHKSI-VNELKSQLQKE 527
Cdd:COG1196 309 ERRREL-EERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAeAEEELEELAEE 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 528 EEKERAEMEELMEKLTVLQAQKKSLLLEKNSLTEQNKALEAELERAQKINRKSQKKIEVLKKQVEKAMGNEMSAHQYLAN 607
Cdd:COG1196 388 LLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAE 467
|
250
....*....|....*
gi 50083293 608 LVGLAENITQERDSL 622
Cdd:COG1196 468 LLEEAALLEAALAEL 482
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
378-738 |
5.57e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.52 E-value: 5.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 378 KEKDELnATLKEEMRMFRMRVQEVVKENEELHQELNKSsavtsEEWRQLQTqaKLVLEENKLLLEQLEI--QQRKAKDSH 455
Cdd:TIGR02169 174 KALEEL-EEVEENIERLDLIIDEKRQQLERLRREREKA-----ERYQALLK--EKREYEGYELLKEKEAleRQKEAIERQ 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 456 QERLQ-EVSKLTKQLMLLEAKTHGQEKELAENREQL------EILRAKCQELKTHSD---GKIAVEVHKSIVNELKSQLQ 525
Cdd:TIGR02169 246 LASLEeELEKLTEEISELEKRLEEIEQLLEELNKKIkdlgeeEQLRVKEKIGELEAEiasLERSIAEKERELEDAEERLA 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 526 KEEEK---ERAEMEELMEKLTVLQAQKKSLLLEKNSLTEQNKALEAELERAQKINRKSQKKIEVLKKQVEKAmGNEMSAH 602
Cdd:TIGR02169 326 KLEAEidkLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKL-KREINEL 404
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 603 QylanlvglaenitQERDSLMCLAKCLESEKDGVLNKVIKSNIRLGKLEEKvkgyKKQAALKLGDISHRLLEQQEDFAGK 682
Cdd:TIGR02169 405 K-------------RELDRLQEELQRLSEELADLNAAIAGIEAKINELEEE----KEDKALEIKKQEWKLEQLAADLSKY 467
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 50083293 683 TAQY---RQEMRHLHQVLKDKQEVLDQALQQNRemegelevIWESTFRENRRIRELLQD 738
Cdd:TIGR02169 468 EQELydlKEEYDRVEKELSKLQRELAEAEAQAR--------ASEERVRGGRAVEEVLKA 518
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
382-675 |
6.95e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 43.12 E-value: 6.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 382 ELNATLKE-EMRMFRMRVQEVVKENEELHQELNKSSavtsEEWRQLQTQAKLV---LEENKLLLEQLEIQQRKAKDSHQE 457
Cdd:TIGR02168 217 ELKAELRElELALLVLRLEELREELEELQEELKEAE----EELEELTAELQELeekLEELRLEVSELEEEIEELQKELYA 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 458 RLQEVSKLTKQLMLLEAKTHGQEKELAENREQLEILRAKCQELKTHSDgkiAVEVHKSIVNELKSQLQKEEEKERAEMEE 537
Cdd:TIGR02168 293 LANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELA---ELEEKLEELKEELESLEAELEELEAELEE 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 538 LMEKLTVLQAQ-------KKSLLLEKNSLTEQNKALEAELERAQKINRKSQKKIEVLKKQVEKAMGNEMSAH-----QYL 605
Cdd:TIGR02168 370 LESRLEELEEQletlrskVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAEleeleEEL 449
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 50083293 606 ANLVGLAENITQERDSLMCLAKCLESEKDGVLNKVIKSNIRLGKLE---EKVKGYK------KQAALKLGDISHRLLEQ 675
Cdd:TIGR02168 450 EELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLErlqENLEGFSegvkalLKNQSGLSGILGVLSEL 528
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
521-725 |
8.45e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 42.51 E-value: 8.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 521 KSQLQKEEEKERAEMEELMEKLTVLQAQKKSLLLEKNSLTEQNKALEAELERAQKINRKSQKKIEVLKKQVEK---AMGN 597
Cdd:COG3883 18 IQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGErarALYR 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 598 EMSAHQYLANLVGlAENITQERDSLMCLAKCLESEKDgVLNKVIKSNIRLGKLEEKVKGYKKQAALKLGDishrLLEQQE 677
Cdd:COG3883 98 SGGSVSYLDVLLG-SESFSDFLDRLSALSKIADADAD-LLEELKADKAELEAKKAELEAKLAELEALKAE----LEAAKA 171
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 50083293 678 DFAGKTAQYRQEMRHLHQVLKDKQEVLDQALQQNREMEGELEVIWEST 725
Cdd:COG3883 172 ELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAA 219
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
243-593 |
1.14e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 42.31 E-value: 1.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 243 LKEENMDLNNMNQSLTL---ELNTMKQAMKELQLKLKGMEKEKRKLKEAEKASSQEvaapeLLYLRKQAQELVDENDGLK 319
Cdd:TIGR04523 91 LKKNKDKINKLNSDLSKinsEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTE-----IKKKEKELEKLNNKYNDLK 165
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 320 MTVHRLNVELsryqtkfrHLSKEESLNIEGLPSKgpiPPWLLDIKYLSPLLLayedmmKEKDELNATLKEEMRMFRMRVQ 399
Cdd:TIGR04523 166 KQKEELENEL--------NLLEKEKLNIQKNIDK---IKNKLLKLELLLSNL------KKKIQKNKSLESQISELKKQNN 228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 400 EVVKENEELHQELNKSSAVTSEEWRQL-QTQAKLVLEENKLLLEQLEIQQRKAKdshqerlqeVSKLTKQLMLLEAKTHG 478
Cdd:TIGR04523 229 QLKDNIEKKQQEINEKTTEISNTQTQLnQLKDEQNKIKKQLSEKQKELEQNNKK---------IKELEKQLNQLKSEISD 299
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 479 QEKELAEN-----REQLEILRAKCQELKTH-SDGKIAVEVHKSIVNELKSQLQKEEEKERAEMEELMEK---LTVLQAQK 549
Cdd:TIGR04523 300 LNNQKEQDwnkelKSELKNQEKKLEEIQNQiSQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKqneIEKLKKEN 379
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 50083293 550 KSLLLEKNSLTEQNKALEAELERAQKINRKSQKKIEV--------------LKKQVEK 593
Cdd:TIGR04523 380 QSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKlqqekellekeierLKETIIK 437
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
380-595 |
1.14e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 42.42 E-value: 1.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 380 KDELNATLKEE--MRMFRMRVQEVV-----KENEELHQELNKSSAVT-SEEWRQLQTQAKLVlEENKLLLEQLEIQQRKA 451
Cdd:pfam17380 359 KRELERIRQEEiaMEISRMRELERLqmerqQKNERVRQELEAARKVKiLEEERQRKIQQQKV-EMEQIRAEQEEARQREV 437
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 452 KDSHQERLQEVSKLTKQLMlleakthgqekelaENREQLEILRAKCQELKTHSDGKIAVEVHKSIVNELKSQLQKEEEKE 531
Cdd:pfam17380 438 RRLEEERAREMERVRLEEQ--------------ERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEE 503
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 50083293 532 raemeelmEKLTVLQAQKKSLLLEKNSLTEQNKALEAELERAQKINRKSQKKIEVLKKQVEKAM 595
Cdd:pfam17380 504 --------RKQAMIEEERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEERRRIQEQMR 559
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
388-594 |
1.19e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 42.82 E-value: 1.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 388 KEEMRMFRMRVQEVVKENEELHQELNKSSA----VTSEEWRQLQtQAKLVLEENKLLLEQLEIQQRKAKDSHQERLQEVS 463
Cdd:PTZ00121 1275 EEARKADELKKAEEKKKADEAKKAEEKKKAdeakKKAEEAKKAD-EAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAE 1353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 464 KLTKQLMLLEAKTHGQEKELAENREQLEILRAKCQELKTHSDGKIAVEVHKSIVNELKSQlQKEEEKERAEMEELMEKLT 543
Cdd:PTZ00121 1354 AAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKA-AAAKKKADEAKKKAEEKKK 1432
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 50083293 544 VLQAQKKSlllEKNSLTEQNKALEAELERAQKINRKSQ--KKIEVLKKQVEKA 594
Cdd:PTZ00121 1433 ADEAKKKA---EEAKKADEAKKKAEEAKKAEEAKKKAEeaKKADEAKKKAEEA 1482
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
282-588 |
1.99e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 41.82 E-value: 1.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 282 KRKLKEAEKASSQEVAAPELLYLrKQAQELVDENDGLKMTVHRLNVELSRYQTKFRHLSKE---------ESLNIEGLPS 352
Cdd:PRK11281 50 KQKLLEAEDKLVQQDLEQTLALL-DKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDndeetretlSTLSLRQLES 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 353 KgpippwlldikyLSPLLLAYEDMMKEKDELNA------TLKEemrmfrmRVQEVVKENEELHQELNKSSAVTSEEWRQL 426
Cdd:PRK11281 129 R------------LAQTLDQLQNAQNDLAEYNSqlvslqTQPE-------RAQAALYANSQRLQQIRNLLKGGKVGGKAL 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 427 Q-TQAKLVLEENKLLLEQLEIQQRKAKDSHQerLQEVskLTKQLMLLEAKTHGQEKELAE-----NREQLEILRAKCQEL 500
Cdd:PRK11281 190 RpSQRVLLQAEQALLNAQNDLQRKSLEGNTQ--LQDL--LQKQRDYLTARIQRLEHQLQLlqeaiNSKRLTLSEKTVQEA 265
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 501 KThSDGKIAVEVHKSIVNELKSQLQkeeekeraemeeLMEKLtvLQAQKKSlllekNSLTEQNKALEAELERAQKINRKS 580
Cdd:PRK11281 266 QS-QDEAARIQANPLVAQELEINLQ------------LSQRL--LKATEKL-----NTLTQQNLRVKNWLDRLTQSERNI 325
|
....*...
gi 50083293 581 QKKIEVLK 588
Cdd:PRK11281 326 KEQISVLK 333
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
441-610 |
2.19e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 41.86 E-value: 2.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 441 LEQLEIQQRKAKDSHQERLQEVSKLTKQLMLLEAKTHGQEKElaENREQLEILRAKCQELKTHSDgkiAVEVHKSIVNEL 520
Cdd:COG3096 855 HRAQEQQLRQQLDQLKEQLQLLNKLLPQANLLADETLADRLE--ELREELDAAQEAQAFIQQHGK---ALAQLEPLVAVL 929
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 521 KS------QLQKEEEKERAEMEEL----------MEKLTVLQAQKKSLLLEKNSltEQNKALEAELERAQKINRKSQKKI 584
Cdd:COG3096 930 QSdpeqfeQLQADYLQAKEQQRRLkqqifalsevVQRRPHFSYEDAVGLLGENS--DLNEKLRARLEQAEEARREAREQL 1007
|
170 180
....*....|....*....|....*.
gi 50083293 585 EVLKKQVEkamgnemSAHQYLANLVG 610
Cdd:COG3096 1008 RQAQAQYS-------QYNQVLASLKS 1026
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
221-314 |
2.98e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 40.97 E-value: 2.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 221 SPDITGRARQRYTEitrekfealkeENMDLNNMNQSLTLELNTMKQAMKELQLKLKGMEKEKRKLKEaEKASSQEVAAPE 300
Cdd:PRK00409 500 PENIIEEAKKLIGE-----------DKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEE-KKEKLQEEEDKL 567
|
90
....*....|....
gi 50083293 301 LLYLRKQAQELVDE 314
Cdd:PRK00409 568 LEEAEKEAQQAIKE 581
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
473-589 |
3.29e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 41.00 E-value: 3.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 473 EAKTHGQEKELAENREQLEILRAKCQELKTHsdgkiaVEVHKSIVNELKSQLQKeeekeraemeeLMEKLTVLQAQKKSL 552
Cdd:COG2433 398 EREKEHEERELTEEEEEIRRLEEQVERLEAE------VEELEAELEEKDERIER-----------LERELSEARSEERRE 460
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 50083293 553 LL---EKNSLTEQNKALEAELERAQKINRKSQKKIEVLKK 589
Cdd:COG2433 461 IRkdrEISRLDREIERLERELEEERERIEELKRKLERLKE 500
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
282-633 |
3.82e-03 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 40.66 E-value: 3.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 282 KRKLKEAEKASSQEVAAPELLYLRKQAQELVDENDGLKMTVHRLNVELSRYQTKF-RHLSKEESLNIEGLPSKGP-IPPW 359
Cdd:PLN02939 39 RRGFSSQQKKKRGKNIAPKQRSSNSKLQSNTDENGQLENTSLRTVMELPQKSTSSdDDHNRASMQRDEAIAAIDNeQQTN 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 360 LLDIKYLSPLLLayEDM--MKEKDELNATLKEEMRMFRM-RVQEVVKENEELHQELNKSSAVTSE--EWRQLQTQAKLVL 434
Cdd:PLN02939 119 SKDGEQLSDFQL--EDLvgMIQNAEKNILLLNQARLQALeDLEKILTEKEALQGKINILEMRLSEtdARIKLAAQEKIHV 196
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 435 EENKLLLEQL--EIQQRKAKDSHQERL--QEVSKLTKQLMLLEAKTHGQEKEL---AENREQLEILRAKCQELK-THSDG 506
Cdd:PLN02939 197 EILEEQLEKLrnELLIRGATEGLCVHSlsKELDVLKEENMLLKDDIQFLKAELievAETEERVFKLEKERSLLDaSLREL 276
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 507 KIAVEVHKSIVNELKSQLQKEEEKERAEMEELMEKLTVlQAQKKSLLLEKN-SLTEQNKALEAELERAqKINRKSQKKIE 585
Cdd:PLN02939 277 ESKFIVAQEDVSKLSPLQYDCWWEKVENLQDLLDRATN-QVEKAALVLDQNqDLRDKVDKLEASLKEA-NVSKFSSYKVE 354
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 50083293 586 VLKKQVEKAMGNEMSAHQYLANLVGLAENITQE-RDSLMCLAKclESEK 633
Cdd:PLN02939 355 LLQQKLKLLEERLQASDHEIHSYIQLYQESIKEfQDTLSKLKE--ESKK 401
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
396-594 |
4.43e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.52 E-value: 4.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 396 MRVQEVVKENEELHQELNKSSAVTSEEWRQLQTQAKLVLEENKLL------LEQLEIQQRKAKDSHQERLQEVSKLTKQL 469
Cdd:COG4717 46 MLLERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYaelqeeLEELEEELEELEAELEELREELEKLEKLL 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 470 MLLEAkthgqEKELAENREQLEILRAKCQELKTHsdgkiaVEVHKSIVNELKSQLQKEEEKERAEMEELMEKLTVLQAQK 549
Cdd:COG4717 126 QLLPL-----YQELEALEAELAELPERLEELEER------LEELRELEEELEELEAELAELQEELEELLEQLSLATEEEL 194
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 50083293 550 KSLLLEKNSLTEQNKALEAELERAQKINRKSQKKIEVLKKQVEKA 594
Cdd:COG4717 195 QDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAA 239
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
238-602 |
4.51e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.52 E-value: 4.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 238 EKFEALKEENMDLNNMNQSLTLELNTMKQAMKELQLKLKGMEKEKRKLKEAEKASSQEV------AAPELLYLRKQAQEL 311
Cdd:COG4717 132 QELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATeeelqdLAEELEELQQRLAEL 211
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 312 VDENDGLKMTVHRLNVELSRYQTKFRHLSKEESLNIEGLPSKgpIPPWLLDIKYLSPLLLAYEDMMKEKDELNATLKEEM 391
Cdd:COG4717 212 EEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLL--IAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALL 289
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 392 RMFRMRVQEVVKENEELHQELNKSSAVTSEEWRQLQTQAKLVLEENKLLLEQLEIQQRKAkdshQERLQEVSKLTKQLML 471
Cdd:COG4717 290 FLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEEL----QELLREAEELEEELQL 365
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 472 LEAKTHGQ----------EKELAENREQLEILRAKCQELKTHSD--GKIAVEVHKSIVNELKSQLQKEEEKERAEMEELM 539
Cdd:COG4717 366 EELEQEIAallaeagvedEEELRAALEQAEEYQELKEELEELEEqlEELLGELEELLEALDEEELEEELEELEEELEELE 445
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 50083293 540 EKLTVLQAQKKSLLLEKNSLTEQNKALEAELERAQKINRKSQKKIEVLKKQVEKAMGNEMSAH 602
Cdd:COG4717 446 EELEELREELAELEAELEQLEEDGELAELLQELEELKAELRELAEEWAALKLALELLEEAREE 508
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
233-710 |
4.57e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 40.39 E-value: 4.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 233 TEITREKFEA--LKEENMDLNNMNQSLTLELNTMKQAMKELQLKLKGMEKEKRKLKE-----AEKASSQEVAAPELLYLR 305
Cdd:TIGR04523 145 TEIKKKEKELekLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELllsnlKKKIQKNKSLESQISELK 224
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 306 KQAQELVDENDGLKMTVHRLNVELSRYQTKFRHLSKEESLNIEGLpskgpippwlldikylsplllayEDMMKEKDELNA 385
Cdd:TIGR04523 225 KQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQL-----------------------SEKQKELEQNNK 281
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 386 TLKEEMRMFRMRVQEVVKENEELHQELNKssavtseewrqlqtQAKLVLEENKLLLEQLEIQQRKAKDSHQERLQEVSKL 465
Cdd:TIGR04523 282 KIKELEKQLNQLKSEISDLNNQKEQDWNK--------------ELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQL 347
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 466 TKQLMLLEAKTHGQEKELAENREQLEILR----AKCQELKTHSDGKIAVEVHKSIVNELKSQLQKEEEKERAEMEELMEK 541
Cdd:TIGR04523 348 KKELTNSESENSEKQRELEEKQNEIEKLKkenqSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKE 427
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 542 LTVLQAQKKSLLLEKNSLTEQNKALEAELERAQKINRKSQKKIEVLKKQVEKAMGNEMSAHQYLANLVGLAENITQERDS 621
Cdd:TIGR04523 428 IERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKE 507
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 622 LMCLAKCLESEKDGVLNKVIKSNIRLGKLEEKVKGYKKQAALKLGDISHRLLEQQEDfagktaQYRQEMRHLHQ---VLK 698
Cdd:TIGR04523 508 LEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKENLEKEID------EKNKEIEELKQtqkSLK 581
|
490
....*....|..
gi 50083293 699 DKQEVLDQALQQ 710
Cdd:TIGR04523 582 KKQEEKQELIDQ 593
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
260-583 |
5.24e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 40.51 E-value: 5.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 260 ELNTMKQAMKELQLKLKGMEKEKRKLKEAEKASSQEVA-----APEllylRKQAQELVDENDGLKMTVHRLNVELSRYQT 334
Cdd:PTZ00121 1487 EAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKAdeakkAEE----AKKADEAKKAEEKKKADELKKAEELKKAEE 1562
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 335 KFRHLSKEESLNIEGLPSKGPIPPWLLDIKYLSPLLLAYEDMMKEKDELNATLKEEmrmfRMRVQEVVKEnEELHQELNK 414
Cdd:PTZ00121 1563 KKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEA----KIKAEELKKA-EEEKKKVEQ 1637
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 415 SSAVTSEEWRQLQtQAKLVLEENKLLLEQL----EIQQRKAKDSHQERLQEvskltkqlmllEAKTHGQEKELAENREQL 490
Cdd:PTZ00121 1638 LKKKEAEEKKKAE-ELKKAEEENKIKAAEEakkaEEDKKKAEEAKKAEEDE-----------KKAAEALKKEAEEAKKAE 1705
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 491 EILRAKCQELKTHSDGKIAVEVHKSIVNELKSQLQKEEEKERAEMEELMEKLTVLQAQKKSLLLEKNSLTEQNKALEAEL 570
Cdd:PTZ00121 1706 ELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEEL 1785
|
330
....*....|...
gi 50083293 571 ERAQKINRKSQKK 583
Cdd:PTZ00121 1786 DEEDEKRRMEVDK 1798
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
385-512 |
5.26e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 40.23 E-value: 5.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 385 ATLKEEMRMFRMRVQEVVKENEELHQELNkssavtseewRQLQTQAKLvleENKLLLEQLEIQQRKAKDshqerlQEVSK 464
Cdd:COG2433 409 TEEEEEIRRLEEQVERLEAEVEELEAELE----------EKDERIERL---ERELSEARSEERREIRKD------REISR 469
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 50083293 465 LTKQLMLLEakthgqeKELAENREQLEILRAKCQELKT-----HSDGKIAVEV 512
Cdd:COG2433 470 LDREIERLE-------RELEEERERIEELKRKLERLKElwkleHSGELVPVKV 515
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
230-660 |
7.49e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 39.62 E-value: 7.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 230 QRYTEITREKFEaLKEENMDLNNMNQSLTLELNTMKQAMKELQLKLKGMEKEKRKLKEAEKASSQEV--AAPELLYLRKQ 307
Cdd:TIGR04523 211 QKNKSLESQISE-LKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELeqNNKKIKELEKQ 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 308 AQELVDENDGLKM-----TVHRLNVELSRYQTKFRHLSKEESLNIeglpskgpippwlldiKYLSPLLLAYEDMMKEKDE 382
Cdd:TIGR04523 290 LNQLKSEISDLNNqkeqdWNKELKSELKNQEKKLEEIQNQISQNN----------------KIISQLNEQISQLKKELTN 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 383 L---NATLKEEMRMFRMRVQEVVKENEELHQELNKSSAVTSEEWRQLQTQAKLvleeNKLLLEQLEIQQrkakdshqerl 459
Cdd:TIGR04523 354 SeseNSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKL----NQQKDEQIKKLQ----------- 418
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 460 QEVSKLTKQLMLLEAKTHGQEKELAENREQLEILRAKCQELK-THSDGKIAVEVHKSIVNELKS---QLQKEEEKERAEM 535
Cdd:TIGR04523 419 QEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDnTRESLETQLKVLSRSINKIKQnleQKQKELKSKEKEL 498
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 536 EELMEKLTVLQAQKKSLLLEKNSLTEQNKALEAEleRAQKINRKSQKKIEVLKKQVEKAMGN-EMSAHQYLANLVGLAEN 614
Cdd:TIGR04523 499 KKLNEEKKELEEKVKDLTKKISSLKEKIEKLESE--KKEKESKISDLEDELNKDDFELKKENlEKEIDEKNKEIEELKQT 576
|
410 420 430 440
....*....|....*....|....*....|....*....|....*....
gi 50083293 615 IT---QERDSLMCLAKCLESEKDGVLNKVIKSNIRLGKLEEKVKGYKKQ 660
Cdd:TIGR04523 577 QKslkKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKE 625
|
|
| Golgin_A5 |
pfam09787 |
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining ... |
369-574 |
9.50e-03 |
|
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterized: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1.
Pssm-ID: 462900 [Multi-domain] Cd Length: 305 Bit Score: 38.97 E-value: 9.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 369 LLLAYEDMMKEKDELnatlKEEMRMFRMRVQEVVKEneelHQELNKSSAVTSEEWRQLQTQAKlvleenklllEQLEIQQ 448
Cdd:pfam09787 45 LTLELEELRQERDLL----REEIQKLRGQIQQLRTE----LQELEAQQQEEAESSREQLQELE----------EQLATER 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083293 449 RKakdsHQERLQEVSKLTKQLMLLEAKthgQEKELAENREQLEILRAKCQELKTHSDGKiavEVHKSIVNELKSQLQKee 528
Cdd:pfam09787 107 SA----RREAEAELERLQEELRYLEEE---LRRSKATLQSRIKDREAEIEKLRNQLTSK---SQSSSSQSELENRLHQ-- 174
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 50083293 529 ekeraemeeLMEKLTVLQAQKKSLLLEKNSLTEQNKALEAELERAQ 574
Cdd:pfam09787 175 ---------LTETLIQKQTMLEALSTEKNSLVLQLERMEQQIKELQ 211
|
|
|