|
Name |
Accession |
Description |
Interval |
E-value |
| Mcm2 |
COG1241 |
DNA replicative helicase MCM subunit Mcm2, Cdc46/Mcm family [Replication, recombination and ... |
88-837 |
0e+00 |
|
DNA replicative helicase MCM subunit Mcm2, Cdc46/Mcm family [Replication, recombination and repair];
Pssm-ID: 440854 [Multi-domain] Cd Length: 682 Bit Score: 555.57 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 88 DSSPLIEKiqaFEKFFTRHIdlYdKDEI-------ERKGSILVDFKELTEGGevtnliPDIATELRDAPEKTLACMGLAI 160
Cdd:COG1241 1 EESDLVDK---FEEFLRRYK--Y-RDEIlelaqeyPEKRSLVVDYNDLYSFD------PDLADDLLENPDEVLEAAEEAL 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 161 HQVLTKDLErhaaelqaqeglsndgetmVNVPHIHARVYNYEPLTQLKNVRANYYGKYIALRGTVVRVSNIKPLCTKMAF 240
Cdd:COG1241 69 REIDLEPYD-------------------VSLGDAHVRITNLPETVPIRDIRSDHIGKLISVEGIVRKATEVKPKITEAAF 129
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 241 LCAACGEIQSFPLPDGKYSLPTKCPVpvC-RGRSFTALRSSplTVTMDWQSIKIQELMSDdqREAGRIPRTIECELVHDL 319
Cdd:COG1241 130 ECPRCGTETYVPQTGEKLQEPHECPG--CgRQGPFKLLPEK--SEFIDAQKIRIQEPPED--LPGGQQPQSIDVILEDDL 203
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 320 VDSCVPGDTVTITGIVKVsnaEEGSRNKNDKCMFLLYIEANSISNSkgqkTKSSEDgckhgmlMEFSLKDLYAIQEIQAE 399
Cdd:COG1241 204 VGEVRPGDRVTVTGILRI---EQRTSGRGKSTIFDLYLEANSIEVE----EKEFEE-------IEITEEDEEKIKELSKD 269
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 400 ENLFKLIVNSLCPVIFGHELVKAGLALALFGGSQKYADDKNRIpiRGDPHILVVGDPGLGKSQMLQAACNVAPRGVYVCG 479
Cdd:COG1241 270 PDIYEKIIASIAPSIYGYEEIKEAIALQLFGGVPKVLPDGSRI--RGDIHILLVGDPGTAKSQLLRYAARLAPRGVYTSG 347
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 480 nttttsgltvtlsKDSSS--------------GDFALEAGALVLGDQGICGIDEFDKMGNQHQ-ALLEAMEQQSISLAKA 544
Cdd:COG1241 348 -------------KGSTAagltaaavrddfgtGRWTLEAGALVLADGGLACIDELDKMREEDRsALHEAMEQQTISIAKA 414
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 545 GVVCSLPARTSIIAAANPVGGHYNKAKTVSENLKMGSALLSRFDLVFILLDTPNEHHDHLLSEHviairagkqrtissat 624
Cdd:COG1241 415 GIVATLNARCSVLAAANPKYGRFDPYEPIAEQIDLPPTLLSRFDLIFVLRDKPDEERDRELARH---------------- 478
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 625 varmnsqdsntsVLEVVSEKPLSERLKVVPGETIDP-IPHQLLRKYIGYARQYVYPRLSTEAARVLQDFYLELRKQSQRL 703
Cdd:COG1241 479 ------------ILKVHRAGELLEQEIEEETEEVKPeIDPDLLRKYIAYARRNVFPVLTEEAKDLIEDFYVDMRKKGEDE 546
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 704 NSS-PITTRQLESLIRLTEARARLELREEATKEDAEDIVEIMKYSMLGTYSD-EFGNLDFERSQHGSGMSNRSTAKRFIS 781
Cdd:COG1241 547 DSPvPITARQLEALIRLAEASARMRLSDTVTEEDAERAIRLVDSCLKDVGVDpETGKFDIDVIETGTSKSQRDKMKLIKD 626
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*.
gi 19923727 782 ALNNVAERtYNNIFQFHQLRQIAKELNIQVADFENFIGSLNDQGYLLKKGPKVYQL 837
Cdd:COG1241 627 IIKELEEE-SSGGAPIEDVIEEAEEEGIDREKAEELIEKLKRKGEIYEPKPGHYKK 681
|
|
| MCM8 |
cd17759 |
DNA helicase Mcm8; Mcm8 plays an important role homologous recombination repair. It forms a ... |
405-747 |
2.04e-178 |
|
DNA helicase Mcm8; Mcm8 plays an important role homologous recombination repair. It forms a complex with Mcm9 that is required for homologous recombination (HR) repair induced by DNA interstrand crosslinks (ICLs).
Pssm-ID: 350665 [Multi-domain] Cd Length: 289 Bit Score: 514.39 E-value: 2.04e-178
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 405 LIVNSLCPVIFGHELVKAGLALALFGGSQKYADDKNRIPIRGDPHILVVGDPGLGKSQMLQAACNVAPRGVYVCGNTTTT 484
Cdd:cd17759 1 LIVNSLCPAIYGHELVKAGLLLSLFGGKQKYADDKNRIPIRGDPHVLIVGDPGLGKSQMLQAACNIAPRGVYVCGNTTTT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 485 SGLTVTLSKDSSSGDFALEAGALVLGDQGICGIDEFDKMGNQHQALLEAMEQQSISLAKAGVVCSLPARTSIIAAANPVG 564
Cdd:cd17759 81 SGLTVTLTKDGRSGDFALEAGALVLGDQGICGIDEFDKMGSQHQALLEAMEQQSVSLAKAGVVCSLPARTSVIAAANPVG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 565 GHYNKAKTVSENLKMGSALLSRFDLVFILLDTPNEHHDHLLSEHviairagkqrtissatvarmnsqdsntsvlevvsek 644
Cdd:cd17759 161 GHYNKGKTVSENLKMGPALLSRFDLVFILLDTPSEEHDHLLSEH------------------------------------ 204
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 645 plserlkvvpgetidpipHQLLRKYIGYARQYVYPRLSTEAARVLQDFYLELRKQSQRLNSSPITTRQLESLIRLTEARA 724
Cdd:cd17759 205 ------------------HQLLRKYISYARQYVNPVLSKDASEALQEFYLELRKQNQLADSSPITTRQLESLIRLTEARA 266
|
330 340
....*....|....*....|...
gi 19923727 725 RLELREEATKEDAEDIVEIMKYS 747
Cdd:cd17759 267 RLELREEATKEDAEDVIEIMKES 289
|
|
| MCM |
smart00350 |
minichromosome maintenance proteins; |
207-749 |
7.84e-155 |
|
minichromosome maintenance proteins;
Pssm-ID: 214631 [Multi-domain] Cd Length: 509 Bit Score: 462.50 E-value: 7.84e-155
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 207 LKNVRANYYGKYIALRGTVVRVSNIKPLCTKMAFLCAACGEIQSFPLPDGKYSLPTKCPVPVCRGRSFTALRSSpLTVTM 286
Cdd:smart00350 5 IRELRADHLGKLVRISGIVTRTSGVRPKLKRASFTCEKCGATLGPEIQSGRETEPTVCPPRECQSPTPFSLNHE-RSTFI 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 287 DWQSIKIQElmSDDQREAGRIPRTIECELVHDLVDSCVPGDTVTITGIVKVSNAEEGSRNKNDKCMFLLYIEANSIsnsK 366
Cdd:smart00350 84 DFQKIKLQE--SPEEVPVGQLPRSVDVILDGDLVDKAKPGDRVEVTGIYRNVPYGFKLNTVKGLPVFATYIEANHV---R 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 367 GQKTKSSEDGCkHGMLMEFSLKDLYAIQEIQAEENLFKLIVNSLCPVIFGHELVKAGLALALFGGSQKYADDKNRIpiRG 446
Cdd:smart00350 159 KLDYKRSFEDS-SFSVQSLSDEEEEEIRKLSKDPDIYERLARSLAPSIYGHEDIKKAILLLLFGGVHKNLPDGMKI--RG 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 447 DPHILVVGDPGLGKSQMLQAACNVAPRGVYVCGNTTTTSGLTVTLSKDSSSGDFALEAGALVLGDQGICGIDEFDKMGNQ 526
Cdd:smart00350 236 DINILLCGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRDPETREFTLEAGALVLADNGVCCIDEFDKMDDS 315
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 527 HQ-ALLEAMEQQSISLAKAGVVCSLPARTSIIAAANPVGGHYNKAKTVSENLKMGSALLSRFDLVFILLDTPNEHHDHLL 605
Cdd:smart00350 316 DRtAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDREL 395
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 606 SEHVIAIragkqrtissatvaRMNSQDSNTSVLEVvsekplserlkvvpgetidPIPHQLLRKYIGYARQYVYPRLSTEA 685
Cdd:smart00350 396 AKHVVDL--------------HRYSHPEEDEAFEP-------------------PLSQEKLRKYIAYAREKIKPKLSEEA 442
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 19923727 686 ARVLQDFYLELRK---QSQRLNSSPITTRQLESLIRLTEARARLELREEATKEDAEDIVEIMKYSML 749
Cdd:smart00350 443 ADKLVKAYVDLRKedsQTESRSSIPITVRQLESIIRLSEAHAKMRLSDVVEEADVEEAIRLLRESII 509
|
|
| MCM |
pfam00493 |
MCM P-loop domain; |
389-613 |
2.47e-106 |
|
MCM P-loop domain;
Pssm-ID: 459830 [Multi-domain] Cd Length: 224 Bit Score: 326.02 E-value: 2.47e-106
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 389 DLYAIQEIQAEENLFKLIVNSLCPVIFGHELVKAGLALALFGGSQKYADDKNRIpiRGDPHILVVGDPGLGKSQMLQAAC 468
Cdd:pfam00493 1 DEEEIKELAKRPDIYDKLADSIAPSIYGHEDVKKAILLQLFGGVKKILPDGTRL--RGDINVLLVGDPGTAKSQLLKYVE 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 469 NVAPRGVYVCGNTTTTSGLTVTLSKDSSSGDFALEAGALVLGDQGICGIDEFDKMGNQ-HQALLEAMEQQSISLAKAGVV 547
Cdd:pfam00493 79 KIAPRAVYTSGKGSSAAGLTAAVVRDPVTGEFVLEAGALVLADGGVCCIDEFDKMNDEdRVALHEAMEQQTISIAKAGIV 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 19923727 548 CSLPARTSIIAAANPVGGHYNKAKTVSENLKMGSALLSRFDLVFILLDTPNEHHDHLLSEHVIAIR 613
Cdd:pfam00493 159 ATLNARCSILAAANPIFGRYDPKKSIAENINLPPPLLSRFDLIFVLLDKPDEEKDERLAKHIVDLH 224
|
|
| PTZ00111 |
PTZ00111 |
DNA replication licensing factor MCM4; Provisional |
75-792 |
1.54e-80 |
|
DNA replication licensing factor MCM4; Provisional
Pssm-ID: 173403 [Multi-domain] Cd Length: 915 Bit Score: 278.42 E-value: 1.54e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 75 YKGWKL--YFSEVYSDSSPLIEKIQAFEKFFTrHIDLYDKdeierkgsilVDFKELTEggevtnlipdiatelrdAPEKT 152
Cdd:PTZ00111 122 YYLWKLmnFIKENLRDHSTGYSRILPFEVDLM-HVYSFDK----------VLYKLLVT-----------------FPADC 173
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 153 LACMGLAIHQVLTKDLERHAAELQAQEglsndgetmvNVPHIHARVYNYEPLTQLKNVRANYYGKYIALRGTVVRVSNIK 232
Cdd:PTZ00111 174 IAELDKVLVKLFNELLSKHYSDLSLEN----------NSFFPRARLMNKPVSDCVGNLEPSMADSLVQFSGTVVRQTWIV 243
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 233 PLCTKMAF---------------------------------LCAACGEIQSFPLPDGKYSLPTKCPVPVCRGRSFTALRS 279
Cdd:PTZ00111 244 PEITMACFrcrgqkkiglndyqpctcehyeyviqgevneplLCNECNSKYTFELNHNMCVYSTKKIVKLLQSNSSLNNPD 323
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 280 SP-LTVTMDWQSIKIQELMSDDQreagriprTIECELVHDLVDSCVPGDTVTITGIVKVSNAEEGSRNKNDKCMFLLYIE 358
Cdd:PTZ00111 324 KDgLDNSVDNSGLNGEIYMKDNE--------VINLNLYDDLIDSVKTGDRVTVVGILKVTPIRTSTTRRTLKSLYTYFVN 395
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 359 ANSI----SNSKGQKTKSSEdgcKHGMLMEFSLKDLYAIQEIQAEENLFKLIVNSLCPVIFGHELVKAGLALALFGGSqK 434
Cdd:PTZ00111 396 VIHVkvinSTNANQPEKGLK---YLGNENDFSDLQVYKILELSRNPMIYRILLDSFAPSIKARNNVKIGLLCQLFSGN-K 471
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 435 YADDKNRIP--------IRGDPHILVVGDPGLGKSQMLQAACNVAPRGVYVCGNTTTTSGLTVTLS-KDSSSGDFALEAG 505
Cdd:PTZ00111 472 NSSDFNKSPdacykvdnFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIKfNESDNGRAMIQPG 551
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 506 ALVLGDQGICGIDEFDKMGNQHQALL-EAMEQQSISLAKAGVVCSLPARTSIIAAANPVGGHYNKAKTVSENLKMGSALL 584
Cdd:PTZ00111 552 AVVLANGGVCCIDELDKCHNESRLSLyEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLF 631
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 585 SRFDLVFILLDTPNEHHDHLLSEhVIAiragKQRTISSATVARMNS---QDSNTSVLEvvsekplSERLKvvPGETIDPI 661
Cdd:PTZ00111 632 TRFDLIYLVLDHIDQDTDQLISL-SIA----KDFLLPHMTGSGNDEdtyDRSNTMHVE-------DESLR--SEKDYNKN 697
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 662 PHQLLRKYIGYARQYVYPRLSTEAARVLQDFYLELRK------------------------QSQRLNSSPITTRQLESLI 717
Cdd:PTZ00111 698 DLDMLRMYIKFSKLHCFPKLSDEAKKVITREYVKMRQgnfqtsnldelehaqedddddlyyQSSGTRMIYVSSRMISSII 777
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 19923727 718 RLTEARARLELREEATKEDAEDIVEIMKYSMLGTYSDEF-GNLDFERSQHGSGMSNRSTAKRFISALNNVAERTYN 792
Cdd:PTZ00111 778 RISVSLARMRLSTVVTPADALQAVQIVKSSTFQSLVDPTtGKIDFDQLHQGITTNKMQQLNQMYEQVLSVLTRSSN 853
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| Mcm2 |
COG1241 |
DNA replicative helicase MCM subunit Mcm2, Cdc46/Mcm family [Replication, recombination and ... |
88-837 |
0e+00 |
|
DNA replicative helicase MCM subunit Mcm2, Cdc46/Mcm family [Replication, recombination and repair];
Pssm-ID: 440854 [Multi-domain] Cd Length: 682 Bit Score: 555.57 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 88 DSSPLIEKiqaFEKFFTRHIdlYdKDEI-------ERKGSILVDFKELTEGGevtnliPDIATELRDAPEKTLACMGLAI 160
Cdd:COG1241 1 EESDLVDK---FEEFLRRYK--Y-RDEIlelaqeyPEKRSLVVDYNDLYSFD------PDLADDLLENPDEVLEAAEEAL 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 161 HQVLTKDLErhaaelqaqeglsndgetmVNVPHIHARVYNYEPLTQLKNVRANYYGKYIALRGTVVRVSNIKPLCTKMAF 240
Cdd:COG1241 69 REIDLEPYD-------------------VSLGDAHVRITNLPETVPIRDIRSDHIGKLISVEGIVRKATEVKPKITEAAF 129
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 241 LCAACGEIQSFPLPDGKYSLPTKCPVpvC-RGRSFTALRSSplTVTMDWQSIKIQELMSDdqREAGRIPRTIECELVHDL 319
Cdd:COG1241 130 ECPRCGTETYVPQTGEKLQEPHECPG--CgRQGPFKLLPEK--SEFIDAQKIRIQEPPED--LPGGQQPQSIDVILEDDL 203
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 320 VDSCVPGDTVTITGIVKVsnaEEGSRNKNDKCMFLLYIEANSISNSkgqkTKSSEDgckhgmlMEFSLKDLYAIQEIQAE 399
Cdd:COG1241 204 VGEVRPGDRVTVTGILRI---EQRTSGRGKSTIFDLYLEANSIEVE----EKEFEE-------IEITEEDEEKIKELSKD 269
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 400 ENLFKLIVNSLCPVIFGHELVKAGLALALFGGSQKYADDKNRIpiRGDPHILVVGDPGLGKSQMLQAACNVAPRGVYVCG 479
Cdd:COG1241 270 PDIYEKIIASIAPSIYGYEEIKEAIALQLFGGVPKVLPDGSRI--RGDIHILLVGDPGTAKSQLLRYAARLAPRGVYTSG 347
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 480 nttttsgltvtlsKDSSS--------------GDFALEAGALVLGDQGICGIDEFDKMGNQHQ-ALLEAMEQQSISLAKA 544
Cdd:COG1241 348 -------------KGSTAagltaaavrddfgtGRWTLEAGALVLADGGLACIDELDKMREEDRsALHEAMEQQTISIAKA 414
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 545 GVVCSLPARTSIIAAANPVGGHYNKAKTVSENLKMGSALLSRFDLVFILLDTPNEHHDHLLSEHviairagkqrtissat 624
Cdd:COG1241 415 GIVATLNARCSVLAAANPKYGRFDPYEPIAEQIDLPPTLLSRFDLIFVLRDKPDEERDRELARH---------------- 478
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 625 varmnsqdsntsVLEVVSEKPLSERLKVVPGETIDP-IPHQLLRKYIGYARQYVYPRLSTEAARVLQDFYLELRKQSQRL 703
Cdd:COG1241 479 ------------ILKVHRAGELLEQEIEEETEEVKPeIDPDLLRKYIAYARRNVFPVLTEEAKDLIEDFYVDMRKKGEDE 546
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 704 NSS-PITTRQLESLIRLTEARARLELREEATKEDAEDIVEIMKYSMLGTYSD-EFGNLDFERSQHGSGMSNRSTAKRFIS 781
Cdd:COG1241 547 DSPvPITARQLEALIRLAEASARMRLSDTVTEEDAERAIRLVDSCLKDVGVDpETGKFDIDVIETGTSKSQRDKMKLIKD 626
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*.
gi 19923727 782 ALNNVAERtYNNIFQFHQLRQIAKELNIQVADFENFIGSLNDQGYLLKKGPKVYQL 837
Cdd:COG1241 627 IIKELEEE-SSGGAPIEDVIEEAEEEGIDREKAEELIEKLKRKGEIYEPKPGHYKK 681
|
|
| MCM8 |
cd17759 |
DNA helicase Mcm8; Mcm8 plays an important role homologous recombination repair. It forms a ... |
405-747 |
2.04e-178 |
|
DNA helicase Mcm8; Mcm8 plays an important role homologous recombination repair. It forms a complex with Mcm9 that is required for homologous recombination (HR) repair induced by DNA interstrand crosslinks (ICLs).
Pssm-ID: 350665 [Multi-domain] Cd Length: 289 Bit Score: 514.39 E-value: 2.04e-178
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 405 LIVNSLCPVIFGHELVKAGLALALFGGSQKYADDKNRIPIRGDPHILVVGDPGLGKSQMLQAACNVAPRGVYVCGNTTTT 484
Cdd:cd17759 1 LIVNSLCPAIYGHELVKAGLLLSLFGGKQKYADDKNRIPIRGDPHVLIVGDPGLGKSQMLQAACNIAPRGVYVCGNTTTT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 485 SGLTVTLSKDSSSGDFALEAGALVLGDQGICGIDEFDKMGNQHQALLEAMEQQSISLAKAGVVCSLPARTSIIAAANPVG 564
Cdd:cd17759 81 SGLTVTLTKDGRSGDFALEAGALVLGDQGICGIDEFDKMGSQHQALLEAMEQQSVSLAKAGVVCSLPARTSVIAAANPVG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 565 GHYNKAKTVSENLKMGSALLSRFDLVFILLDTPNEHHDHLLSEHviairagkqrtissatvarmnsqdsntsvlevvsek 644
Cdd:cd17759 161 GHYNKGKTVSENLKMGPALLSRFDLVFILLDTPSEEHDHLLSEH------------------------------------ 204
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 645 plserlkvvpgetidpipHQLLRKYIGYARQYVYPRLSTEAARVLQDFYLELRKQSQRLNSSPITTRQLESLIRLTEARA 724
Cdd:cd17759 205 ------------------HQLLRKYISYARQYVNPVLSKDASEALQEFYLELRKQNQLADSSPITTRQLESLIRLTEARA 266
|
330 340
....*....|....*....|...
gi 19923727 725 RLELREEATKEDAEDIVEIMKYS 747
Cdd:cd17759 267 RLELREEATKEDAEDVIEIMKES 289
|
|
| MCM |
smart00350 |
minichromosome maintenance proteins; |
207-749 |
7.84e-155 |
|
minichromosome maintenance proteins;
Pssm-ID: 214631 [Multi-domain] Cd Length: 509 Bit Score: 462.50 E-value: 7.84e-155
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 207 LKNVRANYYGKYIALRGTVVRVSNIKPLCTKMAFLCAACGEIQSFPLPDGKYSLPTKCPVPVCRGRSFTALRSSpLTVTM 286
Cdd:smart00350 5 IRELRADHLGKLVRISGIVTRTSGVRPKLKRASFTCEKCGATLGPEIQSGRETEPTVCPPRECQSPTPFSLNHE-RSTFI 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 287 DWQSIKIQElmSDDQREAGRIPRTIECELVHDLVDSCVPGDTVTITGIVKVSNAEEGSRNKNDKCMFLLYIEANSIsnsK 366
Cdd:smart00350 84 DFQKIKLQE--SPEEVPVGQLPRSVDVILDGDLVDKAKPGDRVEVTGIYRNVPYGFKLNTVKGLPVFATYIEANHV---R 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 367 GQKTKSSEDGCkHGMLMEFSLKDLYAIQEIQAEENLFKLIVNSLCPVIFGHELVKAGLALALFGGSQKYADDKNRIpiRG 446
Cdd:smart00350 159 KLDYKRSFEDS-SFSVQSLSDEEEEEIRKLSKDPDIYERLARSLAPSIYGHEDIKKAILLLLFGGVHKNLPDGMKI--RG 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 447 DPHILVVGDPGLGKSQMLQAACNVAPRGVYVCGNTTTTSGLTVTLSKDSSSGDFALEAGALVLGDQGICGIDEFDKMGNQ 526
Cdd:smart00350 236 DINILLCGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRDPETREFTLEAGALVLADNGVCCIDEFDKMDDS 315
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 527 HQ-ALLEAMEQQSISLAKAGVVCSLPARTSIIAAANPVGGHYNKAKTVSENLKMGSALLSRFDLVFILLDTPNEHHDHLL 605
Cdd:smart00350 316 DRtAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDREL 395
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 606 SEHVIAIragkqrtissatvaRMNSQDSNTSVLEVvsekplserlkvvpgetidPIPHQLLRKYIGYARQYVYPRLSTEA 685
Cdd:smart00350 396 AKHVVDL--------------HRYSHPEEDEAFEP-------------------PLSQEKLRKYIAYAREKIKPKLSEEA 442
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 19923727 686 ARVLQDFYLELRK---QSQRLNSSPITTRQLESLIRLTEARARLELREEATKEDAEDIVEIMKYSML 749
Cdd:smart00350 443 ADKLVKAYVDLRKedsQTESRSSIPITVRQLESIIRLSEAHAKMRLSDVVEEADVEEAIRLLRESII 509
|
|
| MCM |
cd17706 |
MCM helicase family; MCM helicases are a family of helicases that play an important role in ... |
405-747 |
7.83e-145 |
|
MCM helicase family; MCM helicases are a family of helicases that play an important role in replication and homologous recombination repair. The heterohexameric ring-shaped Mcm2-7 complex is part of the replicative helicase that unwinds parental double-stranded DNA at a replication fork to provide single-stranded DNA templates for the replicative polymerases. Mcm8 and Mcm9, form a complex required for homologous recombination (HR) repair induced by DNA interstrand crosslinks (ICLs).
Pssm-ID: 350658 [Multi-domain] Cd Length: 311 Bit Score: 429.46 E-value: 7.83e-145
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 405 LIVNSLCPVIFGHELVKAGLALALFGGSQKYADDknRIPIRGDPHILVVGDPGLGKSQMLQAACNVAPRGVYVCGNTTTT 484
Cdd:cd17706 1 ILADSIAPSIYGHEDVKKAVLLQLFGGVQKILED--GTRIRGDIHILLVGDPGTAKSQILKYVLKIAPRGVYTSGKGSSG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 485 SGLTVTLSKDSSSGDFALEAGALVLGDQGICGIDEFDKMGNQHQ-ALLEAMEQQSISLAKAGVVCSLPARTSIIAAANPV 563
Cdd:cd17706 79 AGLTAAVVRDSETGEWYLEAGALVLADGGVCCIDEFDKMKELDRtALHEAMEQQTISIAKAGIVTTLNARCSILAAANPK 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 564 GGHYNKAKTVSENLKMGSALLSRFDLVFILLDTPNEHHDHLLSEHVIAIRAGKQRTIssatvarmnsqdsntsvlevvse 643
Cdd:cd17706 159 GGRYNPKLSPIENINLPSPLLSRFDLIFVIRDDPDEERDEELAEHIIDLHRGSDPEE----------------------- 215
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 644 kplserlKVVPGETIDPIPHQLLRKYIGYARQyVYPRLSTEAARVLQDFYLELRKQSQRLNSSPITTRQLESLIRLTEAR 723
Cdd:cd17706 216 -------QVKPEEDGIPIDIELLRKYILYARQ-IHPKISEEAREKLVRWYVELRKESERRSTIPITARQLESVIRLAEAH 287
|
330 340
....*....|....*....|....
gi 19923727 724 ARLELREEATKEDAEDIVEIMKYS 747
Cdd:cd17706 288 AKMRLSEVVTEEDVEEAIRLVRHS 311
|
|
| MCM_arch |
cd17761 |
archaeal MCM protein; archaeal MCM proteins form a homohexameric ring homologous to the ... |
405-744 |
3.28e-110 |
|
archaeal MCM protein; archaeal MCM proteins form a homohexameric ring homologous to the eukaryotic Mcm2-7 helicase and also function as the replicative helicase at the replication fork
Pssm-ID: 350667 [Multi-domain] Cd Length: 308 Bit Score: 339.81 E-value: 3.28e-110
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 405 LIVNSLCPVIFGHELVKAGLALALFGGSQKYADDKNRIpiRGDPHILVVGDPGLGKSQMLQAACNVAPRGVYVCGNTTTT 484
Cdd:cd17761 2 KIISSIAPSIYGHEDVKEAIALQLFGGVPKVLPDGTRI--RGDIHILLVGDPGTAKSQLLKYVSKVAPRAVYTTGKGSTA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 485 SGLTVTLSKDSSSGDFALEAGALVLGDQGICGIDEFDKMGNQHQ-ALLEAMEQQSISLAKAGVVCSLPARTSIIAAANPV 563
Cdd:cd17761 80 AGLTAAVVRDEGTGEWYLEAGALVLADKGIAVVDEIDKMRKEDRsALHEAMEQQTISIAKAGIVATLNARAAVLAAANPK 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 564 GGHYNKAKTVSENLKMGSALLSRFDLVFILLDTPNEHHDHLLSEHviairagkqrtissatvarmnsqdsntsVLEVVSE 643
Cdd:cd17761 160 FGRFDSYRPVAEQIDLPPTLLSRFDLIFVLKDTPNEEKDRRLANH----------------------------ILDTHSG 211
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 644 KPLSErlkVVPgeTIDPiphQLLRKYIGYARQYVYPRLSTEAARVLQDFYLELRKQSQRLNSS-PITTRQLESLIRLTEA 722
Cdd:cd17761 212 GEMRE---IKP--EIDP---DLLRKYIAYARKNVRPVLTEEAKQLIKDFYVEMRKSGQETPSPvPITARQLEALVRLSEA 283
|
330 340
....*....|....*....|..
gi 19923727 723 RARLELREEATKEDAEDIVEIM 744
Cdd:cd17761 284 SARMRLSQEVTLEDAERAIRIM 305
|
|
| MCM |
pfam00493 |
MCM P-loop domain; |
389-613 |
2.47e-106 |
|
MCM P-loop domain;
Pssm-ID: 459830 [Multi-domain] Cd Length: 224 Bit Score: 326.02 E-value: 2.47e-106
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 389 DLYAIQEIQAEENLFKLIVNSLCPVIFGHELVKAGLALALFGGSQKYADDKNRIpiRGDPHILVVGDPGLGKSQMLQAAC 468
Cdd:pfam00493 1 DEEEIKELAKRPDIYDKLADSIAPSIYGHEDVKKAILLQLFGGVKKILPDGTRL--RGDINVLLVGDPGTAKSQLLKYVE 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 469 NVAPRGVYVCGNTTTTSGLTVTLSKDSSSGDFALEAGALVLGDQGICGIDEFDKMGNQ-HQALLEAMEQQSISLAKAGVV 547
Cdd:pfam00493 79 KIAPRAVYTSGKGSSAAGLTAAVVRDPVTGEFVLEAGALVLADGGVCCIDEFDKMNDEdRVALHEAMEQQTISIAKAGIV 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 19923727 548 CSLPARTSIIAAANPVGGHYNKAKTVSENLKMGSALLSRFDLVFILLDTPNEHHDHLLSEHVIAIR 613
Cdd:pfam00493 159 ATLNARCSILAAANPIFGRYDPKKSIAENINLPPPLLSRFDLIFVLLDKPDEEKDERLAKHIVDLH 224
|
|
| MCM2 |
cd17753 |
DNA replication licensing factor Mcm2; Mcm2 is a helicase that play an important role in ... |
406-744 |
1.97e-99 |
|
DNA replication licensing factor Mcm2; Mcm2 is a helicase that play an important role in replication. It is part of the heterohexameric ring-shaped Mcm2-7 complex, which is part of the replicative helicase that unwinds parental double-stranded DNA at a replication fork to provide single-stranded DNA templates for the replicative polymerases.
Pssm-ID: 350659 [Multi-domain] Cd Length: 325 Bit Score: 312.07 E-value: 1.97e-99
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 406 IVNSLCPVIFGHELVKAGLALALFGGSQKYADDKNRIpiRGDPHILVVGDPGLGKSQMLQAACNVAPRGVYVCGNTTTTS 485
Cdd:cd17753 2 IINSIAPSIYGHDDIKTAIALALFGGVAKNPGGKHRI--RGDINVLLLGDPGTAKSQFLKYVEKTAHRAVFTTGQGASAV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 486 GLTVTLSKDSSSGDFALEAGALVLGDQGICGIDEFDKMGNQHQ-ALLEAMEQQSISLAKAGVVCSLPARTSIIAAANPVG 564
Cdd:cd17753 80 GLTASVRKDPVTKEWTLEGGALVLADKGVCLIDEFDKMNDQDRtSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPIG 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 565 GHYNKAKTVSENLKMGSALLSRFDLVFILLDTPNEHHDHLLSEHVIairagkqrtisSATVARMNSQDSNTSVLEVVSEK 644
Cdd:cd17753 160 GRYNPTLTFAQNVNLTEPILSRFDILCVVRDTVDPEEDERLAKFVV-----------GSHVRSHPENDEDREGEEEKNQR 228
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 645 PLSERLKVvpgetiDPIPHQLLRKYIGYARQYVYPRLSTEAARVLQDFYLELRKQSQRLNSSPITTRQLESLIRLTEARA 724
Cdd:cd17753 229 QRPKETKV------EPIPQELLRKYIHYAREKVRPKLNQMDMDKVSRVYADLRKESMATGSLPITVRHLESIIRISEAHA 302
|
330 340
....*....|....*....|
gi 19923727 725 RLELREEATKEDAEDIVEIM 744
Cdd:cd17753 303 KMHLREYVSEEDVDMAIRVM 322
|
|
| MCM6 |
cd17757 |
DNA replication licensing factor Mcm6; Mcm6 is a helicase that play an important role in ... |
406-747 |
9.92e-96 |
|
DNA replication licensing factor Mcm6; Mcm6 is a helicase that play an important role in replication. It is part of the heterohexameric ring-shaped Mcm2-7 complex, which is part of the replicative helicase that unwinds parental double-stranded DNA at a replication fork to provide single-stranded DNA templates for the replicative polymerases.
Pssm-ID: 350663 [Multi-domain] Cd Length: 307 Bit Score: 301.59 E-value: 9.92e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 406 IVNSLCPVIFGHELVKAGLALALFGGSQKYADDKnrIPIRGDPHILVVGDPGLGKSQMLQAACNVAPRGVYVCGNTTTTS 485
Cdd:cd17757 2 LVRSIAPSIYGHEEVKKGILLMLLGGVHKITREG--ISLRGDINVCIVGDPSTAKSQFLKYVEEFSPRAVYTSGKASSAA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 486 GLTVTLSKDSSSGDFALEAGALVLGDQGICGIDEFDKMGNQHQ-ALLEAMEQQSISLAKAGVVCSLPARTSIIAAANPVG 564
Cdd:cd17757 80 GLTAAVVRDEETGDFVIEAGALMLADNGICCIDEFDKMDIKDQvAIHEAMEQQTISITKAGIQATLNARTSILAAANPVG 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 565 GHYNKAKTVSENLKMGSALLSRFDLVFILLDTPNEHHDHLLSEHVIAIRAGKQRTISSatvarmnsqdsntsvlevvsek 644
Cdd:cd17757 160 GRYDRSKSLKQNINISAPIMSRFDLFFVLLDECNEVTDYAIASHIVDLHSKREEAIEP---------------------- 217
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 645 plserlkvvpgetidPIPHQLLRKYIGYARQyVYPRLSTEAARVLQDFYLELRKQSQRLNSSP---ITTRQLESLIRLTE 721
Cdd:cd17757 218 ---------------PFTAEQLKRYIAYART-FKPKLTKEAKDELVEQYKELRQDDASGSTRSsyrITVRQLESLIRLSE 281
|
330 340
....*....|....*....|....*.
gi 19923727 722 ARARLELREEATKEDAEDIVEIMKYS 747
Cdd:cd17757 282 AIARLHCSDEVTPEHVEEAARLLKKS 307
|
|
| MCM4 |
cd17755 |
DNA replication licensing factor Mcm4; Mcm4 is a helicase that play an important role in ... |
405-745 |
1.73e-93 |
|
DNA replication licensing factor Mcm4; Mcm4 is a helicase that play an important role in replication. It is part of the heterohexameric ring-shaped Mcm2-7 complex, which is part of the replicative helicase that unwinds parental double-stranded DNA at a replication fork to provide single-stranded DNA templates for the replicative polymerases.
Pssm-ID: 350661 [Multi-domain] Cd Length: 309 Bit Score: 295.88 E-value: 1.73e-93
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 405 LIVNSLCPVIFGHELVKAGLALALFGGSQKyADDKNRIPIRGDPHILVVGDPGLGKSQMLQAACNVAPRGVYVCGNTTTT 484
Cdd:cd17755 1 RLARSIAPSIYELEDVKKGILLQLFGGTRK-DFTKTGGKYRGDINILLCGDPGTSKSQLLQYVHKISPRGVYTSGKGSSA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 485 SGLTVTLSKDSSSGDFALEAGALVLGDQGICGIDEFDKMGNQHQALL-EAMEQQSISLAKAGVVCSLPARTSIIAAANPV 563
Cdd:cd17755 80 VGLTAYVTRDPDTKQLVLESGALVLSDGGICCIDEFDKMSDSTRSVLhEVMEQQTLSIAKAGIITTLNARTSILASANPI 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 564 GGHYNKAKTVSENLKMGSALLSRFDLVFILLDTPNEHHDHLLSEHVIAiragkqrtissatvarMNSQDSNTSVLEvvse 643
Cdd:cd17755 160 GSRYNPKLTVVENIDLPPTLLSRFDLIYLVLDKVDEKYDRRLAKHLVS----------------LYLEDTPEHIQD---- 219
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 644 kplserlkvvpgETIDPiphQLLRKYIGYARQYVYPRLSTEAARVLQDFYLELRK-QSQRLNSSPITTRQLESLIRLTEA 722
Cdd:cd17755 220 ------------EVLDV---EVLTDYISYAREHIHPKLSEEAAQELVQAYVDMRKmGSDARKRITATPRQLESLIRLAEA 284
|
330 340
....*....|....*....|...
gi 19923727 723 RARLELREEATKEDAEDIVEIMK 745
Cdd:cd17755 285 HAKMRLSNVVEAEDVEEAVRLIR 307
|
|
| MCM5 |
cd17756 |
DNA replication licensing factor Mcm5; Mcm5 is a helicase that play an important role in ... |
405-747 |
1.80e-93 |
|
DNA replication licensing factor Mcm5; Mcm5 is a helicase that play an important role in replication. It is part of the heterohexameric ring-shaped Mcm2-7 complex, which is part of the replicative helicase that unwinds parental double-stranded DNA at a replication fork to provide single-stranded DNA templates for the replicative polymerases.
Pssm-ID: 350662 [Multi-domain] Cd Length: 317 Bit Score: 296.22 E-value: 1.80e-93
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 405 LIVNSLCPVIFGHELVKAGLALALFGGSQKYADDKNRIpiRGDPHILVVGDPGLGKSQMLQAACNVAPRGVYVCGNTTTT 484
Cdd:cd17756 1 IISKSIAPSIYGNEDIKKAIACLLFGGSRKRLPDGMRL--RGDINVLLLGDPGTAKSQLLKFVEKVAPIGVYTSGKGSSA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 485 SGLTVTLSKDSSSGDFALEAGALVLGDQGICGIDEFDKMgNQHQ--ALLEAMEQQSISLAKAGVVCSLPARTSIIAAANP 562
Cdd:cd17756 79 AGLTASVMRDPSTREFYLEGGAMVLADGGVVCIDEFDKM-REDDrvAIHEAMEQQTISIAKAGITTTLNSRTSVLAAANP 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 563 VGGHYNKAKTVSENLKMGSALLSRFDLVFILLDTPNEHHDHLLSEHVIAIRAGKQRTISSatvarmnsqdsntsvlevvs 642
Cdd:cd17756 158 VFGRYDDLKTPGDNIDFQTTILSRFDMIFIVKDKHDEERDITIAKHVINIHASARKASQS-------------------- 217
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 643 ekplserlkvvpGETIDPIPHQLLRKYIGYARQYVYPRLSTEAARVLQDFYLELRKQ-------SQRLNSSPITTRQLES 715
Cdd:cd17756 218 ------------QENEGEIPISKLKRYIAYCRAKCAPRLSEEAAEKLSNHYVTIRKDvrqneleSDNRSSIPITVRQLEA 285
|
330 340 350
....*....|....*....|....*....|..
gi 19923727 716 LIRLTEARARLELREEATKEDAEDIVEIMKYS 747
Cdd:cd17756 286 IIRISESLAKMELSPIATEKHVEEAIRLFQVS 317
|
|
| MCM7 |
cd17758 |
DNA replication licensing factor Mcm7; Mcm7 is a helicase that play an important role in ... |
409-747 |
5.50e-86 |
|
DNA replication licensing factor Mcm7; Mcm7 is a helicase that play an important role in replication. It is part of the heterohexameric ring-shaped Mcm2-7 complex, which is part of the replicative helicase that unwinds parental double-stranded DNA at a replication fork to provide single-stranded DNA templates for the replicative polymerases.
Pssm-ID: 350664 [Multi-domain] Cd Length: 306 Bit Score: 275.83 E-value: 5.50e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 409 SLCPVIFGHELVKAGLALALFGGSQKYADDknrIPIRGDPHILVVGDPGLGKSQMLQAACNVAPRGVYVCGNTTTTSGLT 488
Cdd:cd17758 5 SIAPEIYGHEDVKKALLLLLVGGVDKRGDG---MKIRGDINICLMGDPGVAKSQLLKYICRIAPRSVYTTGRGSSGVGLT 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 489 VTLSKDSSSGDFALEAGALVLGDQGICGIDEFDKMGNQHQ-ALLEAMEQQSISLAKAGVVCSLPARTSIIAAANPVGGHY 567
Cdd:cd17758 82 AAVMKDPVTGEMTLEGGALVLADQGICCIDEFDKMDESDRtAIHEVMEQQTISIAKAGITTTLNARTSILAAANPAYGRY 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 568 NKAKTVSENLKMGSALLSRFDLVFILLDTPNEHHDHLLSEHViairagkqrtissaTVARMNSQDsntsvlevvsekpls 647
Cdd:cd17758 162 NPRRSPEQNINLPAALLSRFDLLFLILDKPDRDNDLRLAEHV--------------TYVHQHNKQ--------------- 212
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 648 erlkvvPGETIDPIPHQLLRKYIGYARQYvYPRLSTEAARVLQDFYLELRKQSQRLNSSPITT-RQLESLIRLTEARARL 726
Cdd:cd17758 213 ------PDSDFEPLDPKLLRAYIALAKRK-RPTVPPALADYIVQAYVEMRQEAKRSKDFTFTTpRTLLAILRLSQALARL 285
|
330 340
....*....|....*....|.
gi 19923727 727 ELREEATKEDAEDIVEIMKYS 747
Cdd:cd17758 286 RLSDSVEIDDVEEALRLMEMS 306
|
|
| MCM9 |
cd17760 |
DNA helicase Mcm9; Mcm9 plays an important role homologous recombination repair. It forms a ... |
405-747 |
5.17e-82 |
|
DNA helicase Mcm9; Mcm9 plays an important role homologous recombination repair. It forms a complex with Mcm8 that is required for homologous recombination (HR) repair induced by DNA interstrand crosslinks (ICLs).
Pssm-ID: 350666 [Multi-domain] Cd Length: 299 Bit Score: 265.18 E-value: 5.17e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 405 LIVNSLCPVIFGHELVKAGLALALFGGSQKYADDKNRIpiRGDPHILVVGDPGLGKSQMLQAACNVAPRGVYVCGNTTTT 484
Cdd:cd17760 1 EILASLCPQVFGLYNVKLAVAMVLAGGVQRIDASGTRV--RGESHLLLVGDPGTGKSQFLKYAAKITPRSVLTAGIGSTS 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 485 SGLTVTLSKDssSGDFALEAGALVLGDQGICGIDEFDKMG-NQHQALLEAMEQQSISLAKAGVVCSLPARTSIIAAANPv 563
Cdd:cd17760 79 AGLTVTAVKD--GGEWNLEAGALVLADGGLCCIDEFNSLKeHDRTSIHEAMEQQTISVAKAGLVCKLNTRTTILAATNP- 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 564 GGHYNKAKTVSENLKMGSALLSRFDLVFILLDTPNEHHDHLLSEHVIairagkqrtissatvarmnSQDSNTSVLEVVse 643
Cdd:cd17760 156 KGQYDPNESISVNIALASPLLSRFDLVLVLLDTKNEDWDRIISSFIL-------------------ENKGEPSKSSKL-- 214
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 644 kplserlkvvpgetidpIPHQLLRKYIGYARQyVYPRLSTEAARVLQDFYlELRKQSQRLNSSPITTRQLESLIRLTEAR 723
Cdd:cd17760 215 -----------------WSMEKMRTYFCLIKN-LRPVLSDEANAILLRYY-QLQRQSDCRNAARTTIRMLESLIRLAEAH 275
|
330 340
....*....|....*....|....
gi 19923727 724 ARLELREEATKEDAEDIVEIMKYS 747
Cdd:cd17760 276 ARLMFRETVTEEDAITVVSVMESS 299
|
|
| PTZ00111 |
PTZ00111 |
DNA replication licensing factor MCM4; Provisional |
75-792 |
1.54e-80 |
|
DNA replication licensing factor MCM4; Provisional
Pssm-ID: 173403 [Multi-domain] Cd Length: 915 Bit Score: 278.42 E-value: 1.54e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 75 YKGWKL--YFSEVYSDSSPLIEKIQAFEKFFTrHIDLYDKdeierkgsilVDFKELTEggevtnlipdiatelrdAPEKT 152
Cdd:PTZ00111 122 YYLWKLmnFIKENLRDHSTGYSRILPFEVDLM-HVYSFDK----------VLYKLLVT-----------------FPADC 173
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 153 LACMGLAIHQVLTKDLERHAAELQAQEglsndgetmvNVPHIHARVYNYEPLTQLKNVRANYYGKYIALRGTVVRVSNIK 232
Cdd:PTZ00111 174 IAELDKVLVKLFNELLSKHYSDLSLEN----------NSFFPRARLMNKPVSDCVGNLEPSMADSLVQFSGTVVRQTWIV 243
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 233 PLCTKMAF---------------------------------LCAACGEIQSFPLPDGKYSLPTKCPVPVCRGRSFTALRS 279
Cdd:PTZ00111 244 PEITMACFrcrgqkkiglndyqpctcehyeyviqgevneplLCNECNSKYTFELNHNMCVYSTKKIVKLLQSNSSLNNPD 323
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 280 SP-LTVTMDWQSIKIQELMSDDQreagriprTIECELVHDLVDSCVPGDTVTITGIVKVSNAEEGSRNKNDKCMFLLYIE 358
Cdd:PTZ00111 324 KDgLDNSVDNSGLNGEIYMKDNE--------VINLNLYDDLIDSVKTGDRVTVVGILKVTPIRTSTTRRTLKSLYTYFVN 395
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 359 ANSI----SNSKGQKTKSSEdgcKHGMLMEFSLKDLYAIQEIQAEENLFKLIVNSLCPVIFGHELVKAGLALALFGGSqK 434
Cdd:PTZ00111 396 VIHVkvinSTNANQPEKGLK---YLGNENDFSDLQVYKILELSRNPMIYRILLDSFAPSIKARNNVKIGLLCQLFSGN-K 471
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 435 YADDKNRIP--------IRGDPHILVVGDPGLGKSQMLQAACNVAPRGVYVCGNTTTTSGLTVTLS-KDSSSGDFALEAG 505
Cdd:PTZ00111 472 NSSDFNKSPdacykvdnFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIKfNESDNGRAMIQPG 551
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 506 ALVLGDQGICGIDEFDKMGNQHQALL-EAMEQQSISLAKAGVVCSLPARTSIIAAANPVGGHYNKAKTVSENLKMGSALL 584
Cdd:PTZ00111 552 AVVLANGGVCCIDELDKCHNESRLSLyEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLF 631
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 585 SRFDLVFILLDTPNEHHDHLLSEhVIAiragKQRTISSATVARMNS---QDSNTSVLEvvsekplSERLKvvPGETIDPI 661
Cdd:PTZ00111 632 TRFDLIYLVLDHIDQDTDQLISL-SIA----KDFLLPHMTGSGNDEdtyDRSNTMHVE-------DESLR--SEKDYNKN 697
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 662 PHQLLRKYIGYARQYVYPRLSTEAARVLQDFYLELRK------------------------QSQRLNSSPITTRQLESLI 717
Cdd:PTZ00111 698 DLDMLRMYIKFSKLHCFPKLSDEAKKVITREYVKMRQgnfqtsnldelehaqedddddlyyQSSGTRMIYVSSRMISSII 777
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 19923727 718 RLTEARARLELREEATKEDAEDIVEIMKYSMLGTYSDEF-GNLDFERSQHGSGMSNRSTAKRFISALNNVAERTYN 792
Cdd:PTZ00111 778 RISVSLARMRLSTVVTPADALQAVQIVKSSTFQSLVDPTtGKIDFDQLHQGITTNKMQQLNQMYEQVLSVLTRSSN 853
|
|
| MCM3 |
cd17754 |
DNA replication licensing factor Mcm3; Mcm3 is a helicase that play an important role in ... |
405-747 |
1.42e-76 |
|
DNA replication licensing factor Mcm3; Mcm3 is a helicase that play an important role in replication. It is part of the heterohexameric ring-shaped Mcm2-7 complex, which is part of the replicative helicase that unwinds parental double-stranded DNA at a replication fork to provide single-stranded DNA templates for the replicative polymerases.
Pssm-ID: 350660 [Multi-domain] Cd Length: 299 Bit Score: 250.85 E-value: 1.42e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 405 LIVNSLCPVIFGHELVKAGLALALFGGSQKyaDDKNRIPIRGDPHILVVGDPGLGKSQMLQAACNVAPRGVYVCGNTTTT 484
Cdd:cd17754 1 LLSKSLAPSIYGHEYIKKAILLMLLGGVEK--NLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGSSG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 485 SGLTVTLSKDSSSGDFALEAGALVLGDQGICGIDEFDKMGNQHQ-ALLEAMEQQSISLAKAGVVCSLPARTSIIAAANPV 563
Cdd:cd17754 79 VGLTAAVTTDQETGERRLEAGAMVLADRGVVCIDEFDKMSDIDRvAIHEVMEQQTVTIAKAGIHASLNARCSVLAAANPV 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 564 GGHYNKAKTVSENLKMGSALLSRFDLVFILLDTPNEHHDHLLSEHVIairagkqrtissatvaRMNSQdsntsvlevvse 643
Cdd:cd17754 159 YGRYDVYKTPMENIGLPDSLLSRFDLLFIVLDDIDEERDRSISEHVL----------------RMHRY------------ 210
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 644 kplserlkvvpgetidpipHQLLRKYIGYARQYVYPRLSTEAARVLQDFYLELRKQ----SQRLNSSPITTRQLESLIRL 719
Cdd:cd17754 211 -------------------IKFLRKYIHYAKERIKPKLTQEAAEYIAEEYADLRNDdntkTDKARTSPITARTLETLIRL 271
|
330 340
....*....|....*....|....*...
gi 19923727 720 TEARARLELREEATKEDAEDIVEIMKYS 747
Cdd:cd17754 272 ATAHAKARLSKTVDKVDAEVALNLLRFA 299
|
|
| MCM_lid |
pfam17855 |
MCM AAA-lid domain; This entry represents the AAA-lid domain found in MCM proteins. |
664-748 |
7.22e-33 |
|
MCM AAA-lid domain; This entry represents the AAA-lid domain found in MCM proteins.
Pssm-ID: 465534 [Multi-domain] Cd Length: 86 Bit Score: 121.88 E-value: 7.22e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 664 QLLRKYIGYARQYVYPRLSTEAARVLQDFYLELRKQS-QRLNSSPITTRQLESLIRLTEARARLELREEATKEDAEDIVE 742
Cdd:pfam17855 1 ELLRKYIAYAREKIKPKLSEEAREKLVDAYVELRKEStGSGSSIPITVRQLESLIRLSEAHAKMRLSEIVTEEDVEEAIR 80
|
....*.
gi 19923727 743 IMKYSM 748
Cdd:pfam17855 81 LLKESL 86
|
|
| MCM8_WHD |
cd22247 |
winged-helix domain (WHD) found in minichromosome maintenance 8 (MCM8) and similar proteins; ... |
773-838 |
8.15e-31 |
|
winged-helix domain (WHD) found in minichromosome maintenance 8 (MCM8) and similar proteins; MCM8 is a DNA helicase that is a component of the MCM8-MCM9 complex, which is involved in the repair of double-stranded DNA breaks (DBSs) and DNA interstrand cross-links (ICLs) by homologous recombination (HR). The MCM8-MCM9 complex is also required for DNA resection by the MRE11-RAD50-NBN/NBS1 (MRN) complex by recruiting the MRN complex to the repair site and by promoting its nuclease activity. This model corresponds to the C-terminal winged-helix domain (WHD) of MCM8, which mediates protein-nucleic acid interaction, as well as protein-protein interaction.
Pssm-ID: 439328 [Multi-domain] Cd Length: 66 Bit Score: 115.27 E-value: 8.15e-31
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 19923727 773 RSTAKRFISALNNVAERTYNNIFQFHQLRQIAKELNIQVADFENFIGSLNDQGYLLKKGPKVYQLQ 838
Cdd:cd22247 1 RKQAKRFVSALQREAERKGNNLFTVDELKQIAKELGLQVDDFDDFIESLNNQGYLLKKGPNLYQLQ 66
|
|
| MCM_OB |
pfam17207 |
MCM OB domain; This family contains an OB-fold found within MCM proteins. This domain contains ... |
206-337 |
1.15e-30 |
|
MCM OB domain; This family contains an OB-fold found within MCM proteins. This domain contains an insertion at the zinc binding motif.
Pssm-ID: 465381 [Multi-domain] Cd Length: 126 Bit Score: 116.81 E-value: 1.15e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 206 QLKNVRANYYGKYIALRGTVVRVSNIKPLCTKMAFLCAACGEIQSFplpdgKYSLPTKCPVPVCRGR-SFTALRSspLTV 284
Cdd:pfam17207 1 SIRDLRSEHIGKLVSVSGIVTRTSEVRPKLKKATFTCRKCGHTVGV-----KITEPTKCPNPECGNKdPFKLVHE--KSK 73
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 19923727 285 TMDWQSIKIQElMSDDQReAGRIPRTIECELVHDLVDSCVPGDTVTITGIVKV 337
Cdd:pfam17207 74 FVDFQKIKIQE-SPEEVP-AGELPRSLDVILDDDLVDRVKPGDRVTVTGIYRV 124
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
435-593 |
6.72e-06 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 46.76 E-value: 6.72e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 435 YADDKNRIPIRGDPHILVVGDPGLGKSQMLQA-ACNVAPRGVYVCGNTTTTSGLTVTLSKDSSSGDFALEAGALVLGDQG 513
Cdd:cd00009 7 IEALREALELPPPKNLLLYGPPGTGKTTLARAiANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPG 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 514 ICGIDEFDKMGNQ-HQALLEAMEQQSISLAKagvvcslPARTSIIAAANPvgghynkaktvSENLKMGSALLSRFDLVFI 592
Cdd:cd00009 87 VLFIDEIDSLSRGaQNALLRVLETLNDLRID-------RENVRVIGATNR-----------PLLGDLDRALYDRLDIRIV 148
|
.
gi 19923727 593 L 593
Cdd:cd00009 149 I 149
|
|
| MoxR |
COG0714 |
MoxR-like ATPase [General function prediction only]; MoxR-like ATPase is part of the Pathway ... |
449-760 |
2.34e-05 |
|
MoxR-like ATPase [General function prediction only]; MoxR-like ATPase is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis
Pssm-ID: 440478 [Multi-domain] Cd Length: 292 Bit Score: 47.08 E-value: 2.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 449 HILVVGDPGLGKSQMLQA---ACNVAPR--------------GVYVCgnttttsgltvtlskDSSSGDFALEAGAL---- 507
Cdd:COG0714 33 HLLLEGVPGVGKTTLAKAlarALGLPFIriqftpdllpsdilGTYIY---------------DQQTGEFEFRPGPLfanv 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 508 VLgdqgicgIDEFDKMGNQHQ-ALLEAMEQQSISLakAGVVCSLPARTSIIAAANPVggHYNKAKTVSEnlkmgsALLSR 586
Cdd:COG0714 98 LL-------ADEINRAPPKTQsALLEAMEERQVTI--PGGTYKLPEPFLVIATQNPI--EQEGTYPLPE------AQLDR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 587 FdLVFILLDTPNEhhdhllsEHVIAIRAGKQRTiSSATVARMNSQDSNTSVLEVVSEKPLSERLKvvpgetidpiphqll 666
Cdd:COG0714 161 F-LLKLYIGYPDA-------EEEREILRRHTGR-HLAEVEPVLSPEELLALQELVRQVHVSEAVL--------------- 216
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 667 rkyiGYARQYVYprlsteAARVLQDFylelrkqsqRLNSSPittRQLESLIRLTEARARLELREEATKEDAEDI-VEIMK 745
Cdd:COG0714 217 ----DYIVDLVR------ATREHPDL---------RKGPSP---RASIALLRAARALALLDGRDYVTPDDVKAVaGPVLK 274
|
330
....*....|....*
gi 19923727 746 YSMLGTYSDEFGNLD 760
Cdd:COG0714 275 HRLILSPEADAEGVT 289
|
|
| PRK09862 |
PRK09862 |
ATP-dependent protease; |
503-622 |
7.48e-04 |
|
ATP-dependent protease;
Pssm-ID: 182120 [Multi-domain] Cd Length: 506 Bit Score: 43.04 E-value: 7.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923727 503 EAGALVLGDQGICGIDEFDKMGNQH-QALLEAMEQQSISLAKAGVVCSLPARTSIIAAANPV-GGHY--NKAKTVSENL- 577
Cdd:PRK09862 286 GPGEISLAHNGVLFLDELPEFERRTlDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSpTGHYqgNHNRCTPEQTl 365
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 19923727 578 ----KMGSALLSRFDLVF-ILLDTPNehhdhLLSEHVIAIRAG---KQRTISS 622
Cdd:PRK09862 366 rylnRLSGPFLDRFDLSLeIPLPPPG-----ILSKTVVPGESSatvKQRVMAA 413
|
|
| RadA_SMS_N |
cd01121 |
bacterial RadA DNA repair protein; Sms or bacterial RadA is a DNA repair protein that plays a ... |
450-479 |
1.07e-03 |
|
bacterial RadA DNA repair protein; Sms or bacterial RadA is a DNA repair protein that plays a role in recombination and recombinational repair of DNA damaged by UV radiation, X-rays, and chemical agent and is responsible for the stabilization or processing of branched DNA molecules.
Pssm-ID: 410866 [Multi-domain] Cd Length: 268 Bit Score: 41.75 E-value: 1.07e-03
10 20 30
....*....|....*....|....*....|....
gi 19923727 450 ILVVGDPGLGKSQ-MLQAACNVAPRG---VYVCG 479
Cdd:cd01121 85 VLIGGDPGIGKSTlLLQVAARLAQRGgkvLYVSG 118
|
|
| Sms |
COG1066 |
DNA repair protein RadA/Sms, contains AAA+ ATPase domain [Replication, recombination and ... |
450-479 |
2.87e-03 |
|
DNA repair protein RadA/Sms, contains AAA+ ATPase domain [Replication, recombination and repair];
Pssm-ID: 440685 [Multi-domain] Cd Length: 453 Bit Score: 41.19 E-value: 2.87e-03
10 20 30
....*....|....*....|....*....|....
gi 19923727 450 ILVVGDPGLGKSQ-MLQAACNVAPRG---VYVCG 479
Cdd:COG1066 92 VLIGGEPGIGKSTlLLQVAARLAKKGgkvLYVSG 125
|
|
| |
